RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 IFI27L2Q9H2X8 130 aa9.78□□□□□ -0.84
MSH6-204ENST00000445503 HINT1P49773 126 aaPredicted RBP9.77□□□□□ -0.85
MSH6-204ENST00000445503 TDRG1Q3Y452 100 aa9.77□□□□□ -0.85
MSH6-204ENST00000445503 SAP30LQ9HAJ7 183 aa9.77□□□□□ -0.85
MSH6-204ENST00000445503 SLC25A10Q9UBX3 287 aaPredicted RBP9.77□□□□□ -0.85
MSH6-204ENST00000445503 CHEK1O14757 476 aa9.77□□□□□ -0.85
MSH6-204ENST00000445503 IGKV1-16P04430 117 aa9.77□□□□□ -0.85
MSH6-204ENST00000445503 SPRNQ5BIV9 151 aa9.77□□□□□ -0.85
MSH6-204ENST00000445503 C11orf42Q8N5U0 333 aa9.77□□□□□ -0.85
MSH6-204ENST00000445503 DNAJC4Q9NNZ3 241 aa9.77□□□□□ -0.85
MSH6-204ENST00000445503 NRN1Q9NPD7 142 aa9.77□□□□□ -0.85
MSH6-204ENST00000445503 ZFHX2Q9C0A1 2572 aaPredicted RBP9.77□□□□□ -0.85
MSH6-204ENST00000445503 HSBP1L1C9JCN9 74 aa9.77□□□□□ -0.85
MSH6-204ENST00000445503 C15orf65H3BRN8 121 aa9.77□□□□□ -0.85
MSH6-204ENST00000445503 SLC25A17O43808 307 aa9.77□□□□□ -0.85
MSH6-204ENST00000445503 MOSP00540 346 aa9.77□□□□□ -0.85
MSH6-204ENST00000445503 VDAC2P45880 294 aaPredicted RBP9.77□□□□□ -0.85
MSH6-204ENST00000445503 FOXA3P55318 350 aaPredicted RBP9.77□□□□□ -0.85
MSH6-204ENST00000445503 RPL8P62917 257 aaKnown RBP9.77□□□□□ -0.85
MSH6-204ENST00000445503 PDPNQ86YL7 162 aa9.77□□□□□ -0.85
MSH6-204ENST00000445503 SSBP4Q9BWG4 385 aaPredicted RBP9.77□□□□□ -0.85
MSH6-204ENST00000445503 M0QZK8 103 aa9.76□□□□□ -0.85
MSH6-204ENST00000445503 NDUFB3O43676 98 aa9.76□□□□□ -0.85
MSH6-204ENST00000445503 CNIH1O95406 144 aa9.76□□□□□ -0.85
MSH6-204ENST00000445503 TYMSP04818 313 aa9.76□□□□□ -0.85
MSH6-204ENST00000445503 TNXAQ16473 311 aa9.76□□□□□ -0.85
MSH6-204ENST00000445503 KLHDC1Q8N7A1 406 aa9.76□□□□□ -0.85
MSH6-204ENST00000445503 BEND2Q8NDZ0 799 aa9.76□□□□□ -0.85
MSH6-204ENST00000445503 PIEZO2Q9H5I5 2752 aa9.76□□□□□ -0.85
MSH6-204ENST00000445503 IGKV3-15P01624 115 aa9.76□□□□□ -0.85
MSH6-204ENST00000445503 SAA1P0DJI8 122 aaPredicted RBP9.76□□□□□ -0.85
MSH6-204ENST00000445503 UTF1Q5T230 341 aa9.76□□□□□ -0.85
MSH6-204ENST00000445503 Q6ZWC4 215 aa9.76□□□□□ -0.85
MSH6-204ENST00000445503 RAB1CQ92928 201 aa9.76□□□□□ -0.85
MSH6-204ENST00000445503 MRPL20Q9BYC9 149 aaKnown RBP9.76□□□□□ -0.85
MSH6-204ENST00000445503 GAL3ST2Q9H3Q3 398 aa9.76□□□□□ -0.85
MSH6-204ENST00000445503 PGPA6NDG6 321 aa9.76□□□□□ -0.85
MSH6-204ENST00000445503 TNFRSF1AP19438 455 aa9.76□□□□□ -0.85
MSH6-204ENST00000445503 GNG5P63218 68 aa9.76□□□□□ -0.85
MSH6-204ENST00000445503 PPIAL4AQ9Y536 164 aa9.76□□□□□ -0.85
MSH6-204ENST00000445503 PLXNB1O43157 2135 aa9.76□□□□□ -0.85
MSH6-204ENST00000445503 AHRRA9YTQ3 701 aa9.75□□□□□ -0.85
MSH6-204ENST00000445503 RPL15P61313 204 aaKnown RBP9.75□□□□□ -0.85
MSH6-204ENST00000445503 DNLZQ5SXM8 178 aa9.75□□□□□ -0.85
MSH6-204ENST00000445503 TMEM144Q7Z5S9 345 aa9.75□□□□□ -0.85
MSH6-204ENST00000445503 AP1S3Q96PC3 154 aa9.75□□□□□ -0.85
MSH6-204ENST00000445503 MIEN1Q9BRT3 115 aa9.75□□□□□ -0.85
MSH6-204ENST00000445503 PROP1O75360 226 aa9.75□□□□□ -0.85
MSH6-204ENST00000445503 RBP4P02753 201 aa9.75□□□□□ -0.85
MSH6-204ENST00000445503 MT-ND6P03923 174 aa9.75□□□□□ -0.85
MSH6-204ENST00000445503 ZNF883P0CG24 379 aa9.75□□□□□ -0.85
MSH6-204ENST00000445503 COX7A1P24310 79 aa9.75□□□□□ -0.85
MSH6-204ENST00000445503 FAM90A1Q86YD7 464 aa9.75□□□□□ -0.85
MSH6-204ENST00000445503 BDP1A6H8Y1 2624 aa9.75□□□□□ -0.85
MSH6-204ENST00000445503 A0A1W2PRD5 423 aa9.75□□□□□ -0.85
MSH6-204ENST00000445503 A0A1W2PRF3 423 aa9.75□□□□□ -0.85
MSH6-204ENST00000445503 A0A1W2PRM7 423 aa9.75□□□□□ -0.85
MSH6-204ENST00000445503 K7EN84 100 aa9.75□□□□□ -0.85
MSH6-204ENST00000445503 AMY1AP04745 511 aa9.75□□□□□ -0.85
MSH6-204ENST00000445503 VMA21Q3ZAQ7 101 aa9.75□□□□□ -0.85
MSH6-204ENST00000445503 COA6Q5JTJ3 125 aaKnown RBP9.75□□□□□ -0.85
MSH6-204ENST00000445503 Q8TCH9 128 aa9.75□□□□□ -0.85
MSH6-204ENST00000445503 FRYQ5TBA9 3013 aa9.75□□□□□ -0.85
MSH6-204ENST00000445503 HLA-DQA1P01909 254 aa9.74□□□□□ -0.85
MSH6-204ENST00000445503 GLRXP35754 106 aa9.74□□□□□ -0.85
MSH6-204ENST00000445503 LYZP61626 148 aa9.74□□□□□ -0.85
MSH6-204ENST00000445503 COL5A1-AS1Q5SY13 56 aa9.74□□□□□ -0.85
MSH6-204ENST00000445503 LCN12Q6JVE5 192 aa9.74□□□□□ -0.85
MSH6-204ENST00000445503 DPRXA6NFQ7 191 aa9.74□□□□□ -0.85
MSH6-204ENST00000445503 ZNF891A8MT65 544 aaPredicted RBP9.74□□□□□ -0.85
MSH6-204ENST00000445503 UPK2O00526 184 aa9.74□□□□□ -0.85
MSH6-204ENST00000445503 CDX4O14627 284 aaPredicted RBP9.74□□□□□ -0.85
MSH6-204ENST00000445503 SIAH2O43255 324 aa9.74□□□□□ -0.85
MSH6-204ENST00000445503 MMP23AO75900 390 aa9.74□□□□□ -0.85
MSH6-204ENST00000445503 MMDQ15546 238 aa9.74□□□□□ -0.85
MSH6-204ENST00000445503 VAMP3Q15836 100 aa9.74□□□□□ -0.85
MSH6-204ENST00000445503 LRRC10Q5BKY1 277 aa9.74□□□□□ -0.85
MSH6-204ENST00000445503 OR1L4Q8NGR5 311 aa9.74□□□□□ -0.85
MSH6-204ENST00000445503 OR52E5Q8NH55 327 aa9.74□□□□□ -0.85
MSH6-204ENST00000445503 ZNF71Q9NQZ8 489 aaPredicted RBP9.74□□□□□ -0.85
MSH6-204ENST00000445503 TEX50A0A1B0GTY4 177 aa9.74□□□□□ -0.85
MSH6-204ENST00000445503 CT45A6P0DMU7 189 aa9.74□□□□□ -0.85
MSH6-204ENST00000445503 CT45A5P0DMU8 189 aa9.74□□□□□ -0.85
MSH6-204ENST00000445503 CT45A7P0DMV0 189 aa9.74□□□□□ -0.85
MSH6-204ENST00000445503 PTTG1IPP53801 180 aa9.74□□□□□ -0.85
MSH6-204ENST00000445503 DMRTA1Q5VZB9 504 aa9.74□□□□□ -0.85
MSH6-204ENST00000445503 RPRMLQ8N4K4 120 aa9.74□□□□□ -0.85
MSH6-204ENST00000445503 OR4B1Q8NGF8 309 aa9.74□□□□□ -0.85
MSH6-204ENST00000445503 ST6GALNAC6Q969X2 333 aa9.74□□□□□ -0.85
MSH6-204ENST00000445503 KLK10O43240 276 aa9.74□□□□□ -0.85
MSH6-204ENST00000445503 TMEM108Q6UXF1 575 aa9.74□□□□□ -0.85
MSH6-204ENST00000445503 ZGRF1Q86YA3 2104 aa9.74□□□□□ -0.85
MSH6-204ENST00000445503 DLL1O00548 723 aa9.73□□□□□ -0.85
MSH6-204ENST00000445503 LGALS4P56470 323 aa9.73□□□□□ -0.85
MSH6-204ENST00000445503 LEMD1Q68G75 181 aa9.73□□□□□ -0.85
MSH6-204ENST00000445503 PGLYRP4Q96LB8 373 aa9.73□□□□□ -0.85
MSH6-204ENST00000445503 GUCD1Q96NT3 240 aa9.73□□□□□ -0.85
MSH6-204ENST00000445503 FTH1P19P0C7X4 201 aa9.73□□□□□ -0.85
MSH6-204ENST00000445503 SFTPCP11686 197 aa9.73□□□□□ -0.85
MSH6-204ENST00000445503 C1orf162Q8NEQ5 155 aaPredicted RBP9.73□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms