RNA–Protein interactions for RNA: ENST00000444458.5

CCDC88A-208, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 4,236 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-208ENST00000444458 OR11G2Q8NGC1 345 aa1.66□□□□□ -2.14
CCDC88A-208ENST00000444458 OR13C4Q8NGS5 318 aa1.66□□□□□ -2.14
CCDC88A-208ENST00000444458 HIST1H2BAQ96A08 127 aa1.66□□□□□ -2.14
CCDC88A-208ENST00000444458 ADAT3Q96EY9 351 aaPredicted RBP1.66□□□□□ -2.14
CCDC88A-208ENST00000444458 C2orf50Q96LR7 162 aa1.66□□□□□ -2.14
CCDC88A-208ENST00000444458 AMMECR1Q9Y4X0 333 aaPredicted RBP1.66□□□□□ -2.14
CCDC88A-208ENST00000444458 COL14A1Q05707 1796 aaKnown RBP1.66□□□□□ -2.14
CCDC88A-208ENST00000444458 TRPM1Q7Z4N2 1603 aa1.66□□□□□ -2.14
CCDC88A-208ENST00000444458 NRXN1Q9ULB1 1477 aa1.66□□□□□ -2.14
CCDC88A-208ENST00000444458 KIDINS220Q9ULH0 1771 aa1.66□□□□□ -2.14
CCDC88A-208ENST00000444458 TRAV4A0A0B4J268 109 aa1.66□□□□□ -2.14
CCDC88A-208ENST00000444458 A8MUN3 132 aa1.66□□□□□ -2.14
CCDC88A-208ENST00000444458 TSPAN19P0C672 248 aa1.66□□□□□ -2.14
CCDC88A-208ENST00000444458 ZNF32P17041 273 aa1.66□□□□□ -2.14
CCDC88A-208ENST00000444458 GPX2P18283 190 aa1.66□□□□□ -2.14
CCDC88A-208ENST00000444458 HIST1H2BOP23527 126 aa1.66□□□□□ -2.14
CCDC88A-208ENST00000444458 BLVRBP30043 206 aaPredicted RBP1.66□□□□□ -2.14
CCDC88A-208ENST00000444458 HIST1H2BBP33778 126 aa1.66□□□□□ -2.14
CCDC88A-208ENST00000444458 OPRM1P35372 400 aa1.66□□□□□ -2.14
CCDC88A-208ENST00000444458 HMGA2P52926 109 aa1.66□□□□□ -2.14
CCDC88A-208ENST00000444458 HIST1H2BDP58876 126 aa1.66□□□□□ -2.14
CCDC88A-208ENST00000444458 DNAJB13P59910 316 aa1.66□□□□□ -2.14
CCDC88A-208ENST00000444458 HIST1H2BCP62807 126 aa1.66□□□□□ -2.14
CCDC88A-208ENST00000444458 BIKQ13323 160 aa1.66□□□□□ -2.14
CCDC88A-208ENST00000444458 ENDOGQ14249 297 aaKnown RBP1.66□□□□□ -2.14
CCDC88A-208ENST00000444458 HIST2H2BEQ16778 126 aa1.66□□□□□ -2.14
CCDC88A-208ENST00000444458 RTL8BQ17RB0 113 aa1.66□□□□□ -2.14
CCDC88A-208ENST00000444458 HIST2H2BFQ5QNW6 126 aaPredicted RBP1.66□□□□□ -2.14
CCDC88A-208ENST00000444458 RPL22L1Q6P5R6 122 aaKnown RBP1.66□□□□□ -2.14
CCDC88A-208ENST00000444458 BPIFA4PQ86YQ2 179 aa1.66□□□□□ -2.14
CCDC88A-208ENST00000444458 EXOC3-AS1Q8N2X6 119 aa1.66□□□□□ -2.14
CCDC88A-208ENST00000444458 ITLN2Q8WWU7 325 aaPredicted RBP1.66□□□□□ -2.14
CCDC88A-208ENST00000444458 HIST1H2BHQ93079 126 aa1.66□□□□□ -2.14
CCDC88A-208ENST00000444458 ARL11Q969Q4 196 aa1.66□□□□□ -2.14
CCDC88A-208ENST00000444458 HIST1H2BNQ99877 126 aa1.66□□□□□ -2.14
CCDC88A-208ENST00000444458 HIST1H2BMQ99879 126 aa1.66□□□□□ -2.14
CCDC88A-208ENST00000444458 RTL8AQ9BWD3 113 aa1.66□□□□□ -2.14
CCDC88A-208ENST00000444458 ZNF471Q9BX82 626 aaPredicted RBP1.66□□□□□ -2.14
CCDC88A-208ENST00000444458 PLA2G12AQ9BZM1 189 aa1.66□□□□□ -2.14
CCDC88A-208ENST00000444458 PLEKHF2Q9H8W4 249 aa1.66□□□□□ -2.14
CCDC88A-208ENST00000444458 ZNRD1Q9P1U0 126 aa1.66□□□□□ -2.14
CCDC88A-208ENST00000444458 FBN3Q75N90 2809 aa1.66□□□□□ -2.14
CCDC88A-208ENST00000444458 DOCK3Q8IZD9 2030 aa1.66□□□□□ -2.14
CCDC88A-208ENST00000444458 OVOS2A0A0G2JMS6 1433 aa1.66□□□□□ -2.14
CCDC88A-208ENST00000444458 SPATA31E1Q6ZUB1 1445 aa1.66□□□□□ -2.14
CCDC88A-208ENST00000444458 NSD3Q9BZ95 1437 aa1.66□□□□□ -2.14
CCDC88A-208ENST00000444458 TRAV5A0A0B4J249 113 aa1.66□□□□□ -2.14
CCDC88A-208ENST00000444458 IGKV1-6A0A0C4DH72 117 aa1.66□□□□□ -2.14
CCDC88A-208ENST00000444458 A0A1B0GX51 115 aa1.66□□□□□ -2.14
CCDC88A-208ENST00000444458 IGLL5B9A064 214 aa1.66□□□□□ -2.14
CCDC88A-208ENST00000444458 BPY2O14599 106 aa1.66□□□□□ -2.14
CCDC88A-208ENST00000444458 DPM2O94777 84 aa1.66□□□□□ -2.14
CCDC88A-208ENST00000444458 LINC00869P0C866 280 aa1.66□□□□□ -2.14
CCDC88A-208ENST00000444458 POLR2HP52434 150 aaKnown RBP1.66□□□□□ -2.14
CCDC88A-208ENST00000444458 TAS2R30P59541 319 aa1.66□□□□□ -2.14
CCDC88A-208ENST00000444458 RRAS2P62070 204 aaPredicted RBP1.66□□□□□ -2.14
CCDC88A-208ENST00000444458 HIST1H1AQ02539 215 aaPredicted RBP1.66□□□□□ -2.14
CCDC88A-208ENST00000444458 RNASE13Q5GAN3 156 aaKnown RBP1.66□□□□□ -2.14
CCDC88A-208ENST00000444458 SSX8Q7RTT4 187 aa1.66□□□□□ -2.14
CCDC88A-208ENST00000444458 TRAPPC6BQ86SZ2 158 aa1.66□□□□□ -2.14
CCDC88A-208ENST00000444458 WDR86Q86TI4 376 aa1.66□□□□□ -2.14
CCDC88A-208ENST00000444458 TYMSOSQ8TAI1 123 aa1.66□□□□□ -2.14
CCDC88A-208ENST00000444458 NRTNQ99748 197 aa1.66□□□□□ -2.14
CCDC88A-208ENST00000444458 NDFIP1Q9BT67 221 aa1.66□□□□□ -2.14
CCDC88A-208ENST00000444458 TCEAL2Q9H3H9 227 aaPredicted RBP1.66□□□□□ -2.14
CCDC88A-208ENST00000444458 RTL9Q8NET4 1388 aa1.66□□□□□ -2.14
CCDC88A-208ENST00000444458 ROBO3Q96MS0 1386 aa1.66□□□□□ -2.14
CCDC88A-208ENST00000444458 TRPM2O94759 1503 aa1.66□□□□□ -2.14
CCDC88A-208ENST00000444458 IBTKQ9P2D0 1353 aaPredicted RBP1.65□□□□□ -2.14
CCDC88A-208ENST00000444458 C9JAW5 83 aa1.65□□□□□ -2.14
CCDC88A-208ENST00000444458 TMX2-CTNND1H3BSU7 103 aa1.65□□□□□ -2.14
CCDC88A-208ENST00000444458 PLA2G10O15496 165 aa1.65□□□□□ -2.14
CCDC88A-208ENST00000444458 BCL2L11O43521 198 aa1.65□□□□□ -2.14
CCDC88A-208ENST00000444458 PAEPP09466 180 aa1.65□□□□□ -2.14
CCDC88A-208ENST00000444458 P0C879 139 aa1.65□□□□□ -2.14
CCDC88A-208ENST00000444458 CFC1P0CG37 223 aa1.65□□□□□ -2.14
CCDC88A-208ENST00000444458 FABP2P12104 132 aa1.65□□□□□ -2.14
CCDC88A-208ENST00000444458 TGFBR1P36897 503 aa1.65□□□□□ -2.14
CCDC88A-208ENST00000444458 NANOS3P60323 173 aaKnown RBP1.65□□□□□ -2.14
CCDC88A-208ENST00000444458 AADACL3Q5VUY0 350 aa1.65□□□□□ -2.14
CCDC88A-208ENST00000444458 MORN3Q6PF18 240 aaPredicted RBP1.65□□□□□ -2.14
CCDC88A-208ENST00000444458 HRCT1Q6UXD1 115 aa1.65□□□□□ -2.14
CCDC88A-208ENST00000444458 ZNF695Q8IW36 515 aa1.65□□□□□ -2.14
CCDC88A-208ENST00000444458 SGMS2Q8NHU3 365 aa1.65□□□□□ -2.14
CCDC88A-208ENST00000444458 MAL2Q969L2 176 aa1.65□□□□□ -2.14
CCDC88A-208ENST00000444458 FAM104AQ969W3 186 aa1.65□□□□□ -2.14
CCDC88A-208ENST00000444458 PLA2G2FQ9BZM2 168 aa1.65□□□□□ -2.14
CCDC88A-208ENST00000444458 NKX6-2Q9C056 277 aaPredicted RBP1.65□□□□□ -2.14
CCDC88A-208ENST00000444458 PDFQ9HBH1 243 aa1.65□□□□□ -2.14
CCDC88A-208ENST00000444458 NAT8Q9UHE5 227 aa1.65□□□□□ -2.14
CCDC88A-208ENST00000444458 TBX21Q9UL17 535 aa1.65□□□□□ -2.14
CCDC88A-208ENST00000444458 HIGD1AQ9Y241 93 aa1.65□□□□□ -2.14
CCDC88A-208ENST00000444458 MED31Q9Y3C7 131 aa1.65□□□□□ -2.14
CCDC88A-208ENST00000444458 PHLDA3Q9Y5J5 127 aa1.65□□□□□ -2.14
CCDC88A-208ENST00000444458 TMEM14AQ9Y6G1 99 aa1.65□□□□□ -2.14
CCDC88A-208ENST00000444458 TRPM3Q9HCF6 1732 aaPredicted RBP1.65□□□□□ -2.14
CCDC88A-208ENST00000444458 SCN10AQ9Y5Y9 1956 aa1.65□□□□□ -2.14
CCDC88A-208ENST00000444458 KIF1AQ12756 1690 aa1.65□□□□□ -2.15
CCDC88A-208ENST00000444458 SCN2AQ99250 2005 aa1.65□□□□□ -2.15
CCDC88A-208ENST00000444458 LINC01565O15544 149 aa1.65□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 101.8 ms