RNA–Protein interactions for RNA: ENST00000431357.1

USP4-205, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 2,141 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-205ENST00000431357 OSR1Q8TAX0 266 aaPredicted RBP9.23□□□□□ -0.93
USP4-205ENST00000431357 CACNG8Q8WXS5 425 aa9.23□□□□□ -0.93
USP4-205ENST00000431357 TMEM106BQ9NUM4 274 aa9.23□□□□□ -0.93
USP4-205ENST00000431357 FRYLO94915 3013 aa9.23□□□□□ -0.93
USP4-205ENST00000431357 INS-IGF2F8WCM5 200 aa9.22□□□□□ -0.93
USP4-205ENST00000431357 FCN1O00602 326 aa9.22□□□□□ -0.93
USP4-205ENST00000431357 NUPR1O60356 82 aa9.22□□□□□ -0.93
USP4-205ENST00000431357 PTTG1IPP53801 180 aa9.22□□□□□ -0.93
USP4-205ENST00000431357 CENPWQ5EE01 88 aa9.22□□□□□ -0.93
USP4-205ENST00000431357 IGFL3Q6UXB1 125 aa9.22□□□□□ -0.93
USP4-205ENST00000431357 CCL13Q99616 98 aa9.22□□□□□ -0.93
USP4-205ENST00000431357 MIEN1Q9BRT3 115 aa9.22□□□□□ -0.93
USP4-205ENST00000431357 POLR3KQ9Y2Y1 108 aaPredicted RBP9.22□□□□□ -0.93
USP4-205ENST00000431357 LINC00312Q9Y6C7 94 aa9.22□□□□□ -0.93
USP4-205ENST00000431357 PCNX2A6NKB5 2137 aa9.22□□□□□ -0.93
USP4-205ENST00000431357 ZNF705FA8MVS1 300 aaPredicted RBP9.22□□□□□ -0.93
USP4-205ENST00000431357 APOA2P02652 100 aa9.22□□□□□ -0.93
USP4-205ENST00000431357 ZNF705DP0CH99 300 aaPredicted RBP9.22□□□□□ -0.93
USP4-205ENST00000431357 ZNF705BP0CI00 300 aaPredicted RBP9.22□□□□□ -0.93
USP4-205ENST00000431357 C8orf88P0DMB2 117 aa9.22□□□□□ -0.93
USP4-205ENST00000431357 RNASE2P10153 161 aaKnown RBP9.22□□□□□ -0.93
USP4-205ENST00000431357 MYOD1P15172 320 aa9.22□□□□□ -0.93
USP4-205ENST00000431357 CRYBB3P26998 211 aa9.22□□□□□ -0.93
USP4-205ENST00000431357 MEF2CQ06413 473 aaPredicted RBP9.22□□□□□ -0.93
USP4-205ENST00000431357 CD69Q07108 199 aa9.22□□□□□ -0.93
USP4-205ENST00000431357 ZNF833PQ6ZTB9 187 aa9.22□□□□□ -0.93
USP4-205ENST00000431357 C11orf42Q8N5U0 333 aa9.22□□□□□ -0.93
USP4-205ENST00000431357 DEFB124Q8NES8 71 aa9.22□□□□□ -0.93
USP4-205ENST00000431357 DEFB108BQ8NET1 73 aa9.22□□□□□ -0.93
USP4-205ENST00000431357 SMIM12Q96EX1 92 aa9.22□□□□□ -0.93
USP4-205ENST00000431357 HEATR1Q9H583 2144 aaKnown RBP9.22□□□□□ -0.93
USP4-205ENST00000431357 TP53TG3Q9ULZ0 132 aa9.22□□□□□ -0.93
USP4-205ENST00000431357 FAM215AQ9Y5M1 114 aa9.22□□□□□ -0.93
USP4-205ENST00000431357 A0A1B0GUS0 222 aa9.21□□□□□ -0.94
USP4-205ENST00000431357 GRIFINA4D1Z8 144 aa9.21□□□□□ -0.94
USP4-205ENST00000431357 A6NNC1 897 aa9.21□□□□□ -0.94
USP4-205ENST00000431357 SNURFLB1AK76 121 aa9.21□□□□□ -0.94
USP4-205ENST00000431357 ISLRO14498 428 aa9.21□□□□□ -0.94
USP4-205ENST00000431357 OR7C2O60412 319 aa9.21□□□□□ -0.94
USP4-205ENST00000431357 IER3P46695 156 aa9.21□□□□□ -0.94
USP4-205ENST00000431357 CX3CL1P78423 397 aa9.21□□□□□ -0.94
USP4-205ENST00000431357 ERHP84090 104 aaKnown RBP9.21□□□□□ -0.94
USP4-205ENST00000431357 KRTCAP3Q53RY4 240 aa9.21□□□□□ -0.94
USP4-205ENST00000431357 DUX4L9Q6RFH8 374 aaPredicted RBP9.21□□□□□ -0.94
USP4-205ENST00000431357 BAGE3Q86Y29 109 aa9.21□□□□□ -0.94
USP4-205ENST00000431357 BAGE2Q86Y30 109 aa9.21□□□□□ -0.94
USP4-205ENST00000431357 ZNF503Q96F45 646 aa9.21□□□□□ -0.94
USP4-205ENST00000431357 TBX15Q96SF7 602 aa9.21□□□□□ -0.94
USP4-205ENST00000431357 SRRM4A7MD48 611 aaKnown RBP9.2□□□□□ -0.94
USP4-205ENST00000431357 DLL1O00548 723 aa9.2□□□□□ -0.94
USP4-205ENST00000431357 SAA1P0DJI8 122 aaPredicted RBP9.2□□□□□ -0.94
USP4-205ENST00000431357 UBE2V1Q13404 147 aa9.2□□□□□ -0.94
USP4-205ENST00000431357 OR8I2Q8N0Y5 310 aa9.2□□□□□ -0.94
USP4-205ENST00000431357 FAM216BQ8N7L0 139 aa9.2□□□□□ -0.94
USP4-205ENST00000431357 NUP37Q8NFH4 326 aa9.2□□□□□ -0.94
USP4-205ENST00000431357 OR4A5Q8NH83 315 aa9.2□□□□□ -0.94
USP4-205ENST00000431357 SLC25A33Q9BSK2 321 aa9.2□□□□□ -0.94
USP4-205ENST00000431357 ALKBH7Q9BT30 221 aaPredicted RBP9.2□□□□□ -0.94
USP4-205ENST00000431357 INTS1Q8N201 2190 aaKnown RBP9.2□□□□□ -0.94
USP4-205ENST00000431357 IGKV1OR2-108A0A075B7D4 117 aa9.2□□□□□ -0.94
USP4-205ENST00000431357 SPAARA0A1B0GVQ0 90 aa9.2□□□□□ -0.94
USP4-205ENST00000431357 MMP23AO75900 390 aa9.2□□□□□ -0.94
USP4-205ENST00000431357 SERF1AO75920 110 aa9.2□□□□□ -0.94
USP4-205ENST00000431357 TOMM40O96008 361 aa9.2□□□□□ -0.94
USP4-205ENST00000431357 IGKV1-16P04430 117 aa9.2□□□□□ -0.94
USP4-205ENST00000431357 TNFRSF1AP19438 455 aa9.2□□□□□ -0.94
USP4-205ENST00000431357 CEACAM8P31997 349 aaPredicted RBP9.2□□□□□ -0.94
USP4-205ENST00000431357 PPOXP50336 477 aa9.2□□□□□ -0.94
USP4-205ENST00000431357 TMEM177Q53S58 311 aa9.2□□□□□ -0.94
USP4-205ENST00000431357 ZNF705AQ6ZN79 300 aaPredicted RBP9.2□□□□□ -0.94
USP4-205ENST00000431357 OR5AU1Q8NGC0 362 aa9.2□□□□□ -0.94
USP4-205ENST00000431357 ZNF714Q96N38 554 aa9.2□□□□□ -0.94
USP4-205ENST00000431357 COMMD5Q9GZQ3 224 aa9.2□□□□□ -0.94
USP4-205ENST00000431357 NDUFA4L2Q9NRX3 87 aa9.2□□□□□ -0.94
USP4-205ENST00000431357 NBEAP1P0C6P0 100 aa9.19□□□□□ -0.94
USP4-205ENST00000431357 USF1P22415 310 aaPredicted RBP9.19□□□□□ -0.94
USP4-205ENST00000431357 CD40P25942 277 aa9.19□□□□□ -0.94
USP4-205ENST00000431357 OR10J3Q5JRS4 329 aa9.19□□□□□ -0.94
USP4-205ENST00000431357 FAM71F2Q6NXP2 309 aa9.19□□□□□ -0.94
USP4-205ENST00000431357 TEX43Q6ZNM6 134 aa9.19□□□□□ -0.94
USP4-205ENST00000431357 Q6ZWC4 215 aa9.19□□□□□ -0.94
USP4-205ENST00000431357 VSTM2AQ8TAG5 236 aa9.19□□□□□ -0.94
USP4-205ENST00000431357 VPS25Q9BRG1 176 aa9.19□□□□□ -0.94
USP4-205ENST00000431357 PRR14LQ5THK1 2151 aa9.19□□□□□ -0.94
USP4-205ENST00000431357 GGTLC3B5MD39 225 aa9.19□□□□□ -0.94
USP4-205ENST00000431357 CHRNB4P30926 498 aa9.19□□□□□ -0.94
USP4-205ENST00000431357 LINC00310P59036 64 aa9.19□□□□□ -0.94
USP4-205ENST00000431357 RPL8P62917 257 aaKnown RBP9.19□□□□□ -0.94
USP4-205ENST00000431357 SUMO1P63165 101 aaKnown RBP9.19□□□□□ -0.94
USP4-205ENST00000431357 Q6ZS92 163 aa9.19□□□□□ -0.94
USP4-205ENST00000431357 LHFPL4Q7Z7J7 247 aa9.19□□□□□ -0.94
USP4-205ENST00000431357 OR5AN1Q8NGI8 311 aa9.19□□□□□ -0.94
USP4-205ENST00000431357 OR1L4Q8NGR5 311 aa9.19□□□□□ -0.94
USP4-205ENST00000431357 HARBI1Q96MB7 349 aa9.19□□□□□ -0.94
USP4-205ENST00000431357 SAMD10Q9BYL1 202 aa9.19□□□□□ -0.94
USP4-205ENST00000431357 TANC2Q9HCD6 1990 aa9.18□□□□□ -0.94
USP4-205ENST00000431357 DSCAML1Q8TD84 2053 aa9.18□□□□□ -0.94
USP4-205ENST00000431357 CBY3A6NI87 242 aa9.18□□□□□ -0.94
USP4-205ENST00000431357 URB1O60287 2271 aaKnown RBP9.18□□□□□ -0.94
USP4-205ENST00000431357 AMY1AP04745 511 aa9.18□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms