RNA–Protein interactions for RNA: ENST00000430086.1

CCDC88A-206, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-206ENST00000430086 RPL18Q07020 188 aaKnown RBP3.06□□□□□ -1.92
CCDC88A-206ENST00000430086 OR8B8Q15620 311 aa3.06□□□□□ -1.92
CCDC88A-206ENST00000430086 RRN3P1Q2M238 152 aa3.06□□□□□ -1.92
CCDC88A-206ENST00000430086 LDLRAD2Q5SZI1 272 aa3.06□□□□□ -1.92
CCDC88A-206ENST00000430086 ANKRD12Q6UB98 2062 aa3.06□□□□□ -1.92
CCDC88A-206ENST00000430086 SDIM1Q6ZPB5 146 aa3.06□□□□□ -1.92
CCDC88A-206ENST00000430086 CNEP1R1Q8N9A8 125 aa3.06□□□□□ -1.92
CCDC88A-206ENST00000430086 KLF14Q8TD94 323 aaPredicted RBP3.06□□□□□ -1.92
CCDC88A-206ENST00000430086 SEC22CQ9BRL7 303 aa3.06□□□□□ -1.92
CCDC88A-206ENST00000430086 UPK3BQ9BT76 320 aa3.06□□□□□ -1.92
CCDC88A-206ENST00000430086 SMDT1Q9H4I9 107 aa3.06□□□□□ -1.92
CCDC88A-206ENST00000430086 TPT1P8Q9HAU6 139 aa3.06□□□□□ -1.92
CCDC88A-206ENST00000430086 DOCK3Q8IZD9 2030 aa3.05□□□□□ -1.92
CCDC88A-206ENST00000430086 CHD5Q8TDI0 1954 aa3.05□□□□□ -1.92
CCDC88A-206ENST00000430086 KIF1BO60333 1816 aa3.05□□□□□ -1.92
CCDC88A-206ENST00000430086 ARAP1Q96P48 1450 aa3.05□□□□□ -1.92
CCDC88A-206ENST00000430086 CRB1P82279 1406 aa3.05□□□□□ -1.92
CCDC88A-206ENST00000430086 TRAV36DV7A0A075B6V5 113 aa3.05□□□□□ -1.92
CCDC88A-206ENST00000430086 IGKV1OR2-108A0A075B7D4 117 aa3.05□□□□□ -1.92
CCDC88A-206ENST00000430086 IGHV3-73A0A0B4J1V6 119 aa3.05□□□□□ -1.92
CCDC88A-206ENST00000430086 ZNF98A6NK75 572 aa3.05□□□□□ -1.92
CCDC88A-206ENST00000430086 TRAPPC2LH3BP13 241 aa3.05□□□□□ -1.92
CCDC88A-206ENST00000430086 LEPROTO15243 131 aa3.05□□□□□ -1.92
CCDC88A-206ENST00000430086 GGCTO75223 188 aaKnown RBP3.05□□□□□ -1.92
CCDC88A-206ENST00000430086 SULT1C4O75897 302 aa3.05□□□□□ -1.92
CCDC88A-206ENST00000430086 LY6HO94772 140 aa3.05□□□□□ -1.92
CCDC88A-206ENST00000430086 CCL3P10147 92 aa3.05□□□□□ -1.92
CCDC88A-206ENST00000430086 BCL2P10415 239 aa3.05□□□□□ -1.92
CCDC88A-206ENST00000430086 SRP14P37108 136 aaKnown RBP3.05□□□□□ -1.92
CCDC88A-206ENST00000430086 CCR2P41597 374 aa3.05□□□□□ -1.92
CCDC88A-206ENST00000430086 POLR2HP52434 150 aaKnown RBP3.05□□□□□ -1.92
CCDC88A-206ENST00000430086 RTL8BQ17RB0 113 aa3.05□□□□□ -1.92
CCDC88A-206ENST00000430086 ZNF767PQ75MW2 155 aa3.05□□□□□ -1.92
CCDC88A-206ENST00000430086 ADM2Q7Z4H4 148 aa3.05□□□□□ -1.92
CCDC88A-206ENST00000430086 OR8J3Q8NGG0 315 aa3.05□□□□□ -1.92
CCDC88A-206ENST00000430086 TM2D3Q9BRN9 247 aa3.05□□□□□ -1.92
CCDC88A-206ENST00000430086 MIEN1Q9BRT3 115 aa3.05□□□□□ -1.92
CCDC88A-206ENST00000430086 SOGA1O94964 1423 aa3.04□□□□□ -1.92
CCDC88A-206ENST00000430086 COLCA2A8K830 154 aa3.04□□□□□ -1.92
CCDC88A-206ENST00000430086 A8MUU9 505 aa3.04□□□□□ -1.92
CCDC88A-206ENST00000430086 C1orf196B1AJZ1 125 aa3.04□□□□□ -1.92
CCDC88A-206ENST00000430086 NDUFA2O43678 99 aa3.04□□□□□ -1.92
CCDC88A-206ENST00000430086 ZNF73O43830 326 aaPredicted RBP3.04□□□□□ -1.92
CCDC88A-206ENST00000430086 S100A1P23297 94 aa3.04□□□□□ -1.92
CCDC88A-206ENST00000430086 NFYBP25208 207 aa3.04□□□□□ -1.92
CCDC88A-206ENST00000430086 EIF5AP63241 154 aaKnown RBP3.04□□□□□ -1.92
CCDC88A-206ENST00000430086 PLCXD2Q0VAA5 305 aa3.04□□□□□ -1.92
CCDC88A-206ENST00000430086 TMEM69Q5SWH9 247 aa3.04□□□□□ -1.92
CCDC88A-206ENST00000430086 FKBP1CQ5VVH2 108 aa3.04□□□□□ -1.92
CCDC88A-206ENST00000430086 ZNF705AQ6ZN79 300 aaPredicted RBP3.04□□□□□ -1.92
CCDC88A-206ENST00000430086 OR51T1Q8NGJ9 327 aa3.04□□□□□ -1.92
CCDC88A-206ENST00000430086 PPTC7Q8NI37 304 aa3.04□□□□□ -1.92
CCDC88A-206ENST00000430086 YPEL2Q96QA6 119 aa3.04□□□□□ -1.92
CCDC88A-206ENST00000430086 KIAA1671Q9BY89 1806 aa3.04□□□□□ -1.92
CCDC88A-206ENST00000430086 DOCK8Q8NF50 2099 aa3.04□□□□□ -1.92
CCDC88A-206ENST00000430086 WDR7Q9Y4E6 1490 aa3.03□□□□□ -1.92
CCDC88A-206ENST00000430086 TICRRQ7Z2Z1 1910 aa3.03□□□□□ -1.92
CCDC88A-206ENST00000430086 IGLV2-18A0A075B6J9 118 aa3.03□□□□□ -1.92
CCDC88A-206ENST00000430086 A0A087WX48 190 aa3.03□□□□□ -1.92
CCDC88A-206ENST00000430086 IGKV1D-43A0A0B4J1Z2 117 aa3.03□□□□□ -1.92
CCDC88A-206ENST00000430086 TLCD2A6NGC4 264 aa3.03□□□□□ -1.92
CCDC88A-206ENST00000430086 RFPL4AA6NLU0 287 aa3.03□□□□□ -1.92
CCDC88A-206ENST00000430086 RFPL4AL1F8VTS6 287 aa3.03□□□□□ -1.92
CCDC88A-206ENST00000430086 C19orf84I3L1E1 186 aa3.03□□□□□ -1.92
CCDC88A-206ENST00000430086 TAX1BP3O14907 124 aa3.03□□□□□ -1.92
CCDC88A-206ENST00000430086 RPL7P18124 248 aaKnown RBP3.03□□□□□ -1.92
CCDC88A-206ENST00000430086 CMPK1P30085 196 aa3.03□□□□□ -1.92
CCDC88A-206ENST00000430086 CA5AP35218 305 aa3.03□□□□□ -1.92
CCDC88A-206ENST00000430086 ZNF80P51504 273 aaPredicted RBP3.03□□□□□ -1.92
CCDC88A-206ENST00000430086 MIAQ16674 131 aa3.03□□□□□ -1.92
CCDC88A-206ENST00000430086 RPL13AP3Q6NVV1 102 aa3.03□□□□□ -1.92
CCDC88A-206ENST00000430086 ZNF880Q6PDB4 577 aa3.03□□□□□ -1.92
CCDC88A-206ENST00000430086 HMGN2P46Q86SG4 172 aa3.03□□□□□ -1.92
CCDC88A-206ENST00000430086 OR8I2Q8N0Y5 310 aa3.03□□□□□ -1.92
CCDC88A-206ENST00000430086 TMEM229BQ8NBD8 167 aa3.03□□□□□ -1.92
CCDC88A-206ENST00000430086 OR5C1Q8NGR4 320 aa3.03□□□□□ -1.92
CCDC88A-206ENST00000430086 CANT1Q8WVQ1 401 aa3.03□□□□□ -1.92
CCDC88A-206ENST00000430086 VPS25Q9BRG1 176 aa3.03□□□□□ -1.92
CCDC88A-206ENST00000430086 AICDAQ9GZX7 198 aa3.03□□□□□ -1.92
CCDC88A-206ENST00000430086 ASF1BQ9NVP2 202 aa3.03□□□□□ -1.92
CCDC88A-206ENST00000430086 TP73-AS1Q9UF72 201 aa3.03□□□□□ -1.92
CCDC88A-206ENST00000430086 HSPB8Q9UJY1 196 aa3.03□□□□□ -1.92
CCDC88A-206ENST00000430086 MED31Q9Y3C7 131 aa3.03□□□□□ -1.92
CCDC88A-206ENST00000430086 S4R3C0 116 aa3.03□□□□□ -1.92
CCDC88A-206ENST00000430086 DSCAML1Q8TD84 2053 aa3.03□□□□□ -1.92
CCDC88A-206ENST00000430086 OTOFQ9HC10 1997 aa3.03□□□□□ -1.92
CCDC88A-206ENST00000430086 PLA2R1Q13018 1463 aa3.03□□□□□ -1.93
CCDC88A-206ENST00000430086 NUP214P35658 2090 aaPredicted RBP3.02□□□□□ -1.93
CCDC88A-206ENST00000430086 DOCK9Q9BZ29 2069 aa3.02□□□□□ -1.93
CCDC88A-206ENST00000430086 SCN10AQ9Y5Y9 1956 aa3.02□□□□□ -1.93
CCDC88A-206ENST00000430086 MYH3P11055 1940 aa3.02□□□□□ -1.93
CCDC88A-206ENST00000430086 IGLV3-12A0A075B6K2 115 aa3.02□□□□□ -1.93
CCDC88A-206ENST00000430086 A0A087X0T9 212 aa3.02□□□□□ -1.93
CCDC88A-206ENST00000430086 TRDV1A0A1B0GX56 115 aa3.02□□□□□ -1.93
CCDC88A-206ENST00000430086 CREBL2O60519 120 aaPredicted RBP3.02□□□□□ -1.93
CCDC88A-206ENST00000430086 IGHV3-7P01780 117 aa3.02□□□□□ -1.93
CCDC88A-206ENST00000430086 TRGC2P03986 189 aa3.02□□□□□ -1.93
CCDC88A-206ENST00000430086 HLA-DMBP28068 263 aa3.02□□□□□ -1.93
CCDC88A-206ENST00000430086 SRIP30626 198 aa3.02□□□□□ -1.93
CCDC88A-206ENST00000430086 S100A11P31949 105 aa3.02□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms