RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 CHRDL1Q9BU40 450 aa6.76□□□□□ -1.33
USP54-203ENST00000418501 GGTLC1Q9BX51 225 aa6.76□□□□□ -1.33
USP54-203ENST00000418501 CTDSP1Q9GZU7 261 aa6.76□□□□□ -1.33
USP54-203ENST00000418501 CHD3Q12873 2000 aaKnown RBP6.76□□□□□ -1.33
USP54-203ENST00000418501 TPRP12270 2363 aaKnown RBP6.76□□□□□ -1.33
USP54-203ENST00000418501 NCOR2Q9Y618 2525 aa6.76□□□□□ -1.33
USP54-203ENST00000418501 A1L4Q6 167 aa6.76□□□□□ -1.33
USP54-203ENST00000418501 SRRM4A7MD48 611 aaKnown RBP6.76□□□□□ -1.33
USP54-203ENST00000418501 PMS2P5A8MQ11 134 aa6.76□□□□□ -1.33
USP54-203ENST00000418501 NUPL2O15504 423 aaKnown RBP6.76□□□□□ -1.33
USP54-203ENST00000418501 LINC00869P0C866 280 aa6.76□□□□□ -1.33
USP54-203ENST00000418501 KCNIP4Q6PIL6 250 aa6.76□□□□□ -1.33
USP54-203ENST00000418501 Q8N7P7 452 aa6.76□□□□□ -1.33
USP54-203ENST00000418501 OR5R1Q8NH85 324 aa6.76□□□□□ -1.33
USP54-203ENST00000418501 SMIM7Q9BQ49 75 aa6.76□□□□□ -1.33
USP54-203ENST00000418501 COL6A6A6NMZ7 2263 aa6.75□□□□□ -1.33
USP54-203ENST00000418501 NPIPB5A8MRT5 1133 aa6.75□□□□□ -1.33
USP54-203ENST00000418501 NDUFA3O95167 84 aa6.75□□□□□ -1.33
USP54-203ENST00000418501 IGLV2-23P01705 113 aa6.75□□□□□ -1.33
USP54-203ENST00000418501 PAX2Q02962 417 aa6.75□□□□□ -1.33
USP54-203ENST00000418501 TMEM241Q24JQ0 296 aa6.75□□□□□ -1.33
USP54-203ENST00000418501 HAPLN4Q86UW8 402 aa6.75□□□□□ -1.33
USP54-203ENST00000418501 HIGD1AQ9Y241 93 aa6.75□□□□□ -1.33
USP54-203ENST00000418501 ICE1Q9Y2F5 2266 aa6.75□□□□□ -1.33
USP54-203ENST00000418501 FAM74A7A6NL05 159 aa6.75□□□□□ -1.33
USP54-203ENST00000418501 PAX8Q06710 450 aa6.75□□□□□ -1.33
USP54-203ENST00000418501 C11orf42Q8N5U0 333 aa6.75□□□□□ -1.33
USP54-203ENST00000418501 OR4F17Q8NGA8 305 aa6.75□□□□□ -1.33
USP54-203ENST00000418501 ANKRD11Q6UB99 2663 aaPredicted RBP6.75□□□□□ -1.33
USP54-203ENST00000418501 C11orf94C9JXX5 98 aa6.75□□□□□ -1.33
USP54-203ENST00000418501 SAA4P35542 130 aa6.75□□□□□ -1.33
USP54-203ENST00000418501 KLRD1Q13241 179 aa6.75□□□□□ -1.33
USP54-203ENST00000418501 HABP2Q14520 560 aaPredicted RBP6.75□□□□□ -1.33
USP54-203ENST00000418501 PRSS57Q6UWY2 283 aa6.75□□□□□ -1.33
USP54-203ENST00000418501 NPIPB3Q92617 1050 aa6.75□□□□□ -1.33
USP54-203ENST00000418501 RBM14Q96PK6 669 aaKnown RBP6.75□□□□□ -1.33
USP54-203ENST00000418501 TMUB1Q9BVT8 246 aa6.75□□□□□ -1.33
USP54-203ENST00000418501 HLA-DRB1P01911 266 aa6.74□□□□□ -1.33
USP54-203ENST00000418501 EBI3Q14213 229 aa6.74□□□□□ -1.33
USP54-203ENST00000418501 HCP5Q6MZN7 132 aa6.74□□□□□ -1.33
USP54-203ENST00000418501 UNQ5815/PRO19632Q6UWF5 114 aa6.74□□□□□ -1.33
USP54-203ENST00000418501 WNT10AQ9GZT5 417 aa6.74□□□□□ -1.33
USP54-203ENST00000418501 MLXQ9UH92 298 aa6.74□□□□□ -1.33
USP54-203ENST00000418501 GAMTQ14353 236 aa6.74□□□□□ -1.33
USP54-203ENST00000418501 ZNF674Q2M3X9 581 aa6.74□□□□□ -1.33
USP54-203ENST00000418501 C9orf152Q5JTZ5 239 aa6.74□□□□□ -1.33
USP54-203ENST00000418501 MGST2Q99735 147 aa6.74□□□□□ -1.33
USP54-203ENST00000418501 MDFIC2A0A1B0GVS7 189 aa6.74□□□□□ -1.33
USP54-203ENST00000418501 NDUFS7O75251 213 aa6.74□□□□□ -1.33
USP54-203ENST00000418501 PRB1P04280 392 aa6.74□□□□□ -1.33
USP54-203ENST00000418501 RAB5BP61020 215 aa6.74□□□□□ -1.33
USP54-203ENST00000418501 DEFB113Q30KQ7 82 aa6.74□□□□□ -1.33
USP54-203ENST00000418501 CYB5R2Q6BCY4 276 aa6.74□□□□□ -1.33
USP54-203ENST00000418501 C15orf54Q8N8G6 183 aa6.74□□□□□ -1.33
USP54-203ENST00000418501 THAP8Q8NA92 274 aa6.74□□□□□ -1.33
USP54-203ENST00000418501 OR51G1Q8NGK1 321 aa6.74□□□□□ -1.33
USP54-203ENST00000418501 CMTM2Q8TAZ6 248 aa6.74□□□□□ -1.33
USP54-203ENST00000418501 EEF1AKMT3Q96AZ1 226 aa6.74□□□□□ -1.33
USP54-203ENST00000418501 ANAPC16Q96DE5 110 aa6.74□□□□□ -1.33
USP54-203ENST00000418501 SLC25A33Q9BSK2 321 aa6.74□□□□□ -1.33
USP54-203ENST00000418501 ZNRD1Q9P1U0 126 aa6.74□□□□□ -1.33
USP54-203ENST00000418501 STAG3L2P0CL84 134 aa6.73□□□□□ -1.33
USP54-203ENST00000418501 STAG3L3P0CL85 134 aa6.73□□□□□ -1.33
USP54-203ENST00000418501 RD3LP0DJH9 198 aa6.73□□□□□ -1.33
USP54-203ENST00000418501 FHITP49789 147 aa6.73□□□□□ -1.33
USP54-203ENST00000418501 CNN1P51911 297 aaKnown RBP6.73□□□□□ -1.33
USP54-203ENST00000418501 FGF8P55075 233 aaPredicted RBP6.73□□□□□ -1.33
USP54-203ENST00000418501 UBE2L3P68036 154 aaKnown RBP6.73□□□□□ -1.33
USP54-203ENST00000418501 BSXQ3C1V8 233 aa6.73□□□□□ -1.33
USP54-203ENST00000418501 HIF1ANQ9NWT6 349 aa6.73□□□□□ -1.33
USP54-203ENST00000418501 CXorf65A6NEN9 183 aa6.73□□□□□ -1.33
USP54-203ENST00000418501 FAM157AC9JC47 383 aa6.73□□□□□ -1.33
USP54-203ENST00000418501 SRP19P09132 144 aaKnown RBP6.73□□□□□ -1.33
USP54-203ENST00000418501 GCHFRP30047 84 aa6.73□□□□□ -1.33
USP54-203ENST00000418501 CSN1S1P47710 185 aa6.73□□□□□ -1.33
USP54-203ENST00000418501 LOXL1Q08397 574 aaPredicted RBP6.73□□□□□ -1.33
USP54-203ENST00000418501 TBX15Q96SF7 602 aa6.73□□□□□ -1.33
USP54-203ENST00000418501 ATP6V0BQ99437 205 aa6.73□□□□□ -1.33
USP54-203ENST00000418501 LSM4Q9Y4Z0 139 aaKnown RBP6.73□□□□□ -1.33
USP54-203ENST00000418501 CRYGBP07316 175 aa6.73□□□□□ -1.33
USP54-203ENST00000418501 ZFP36P26651 326 aaKnown RBP6.73□□□□□ -1.33
USP54-203ENST00000418501 RPL35P42766 123 aaKnown RBP6.73□□□□□ -1.33
USP54-203ENST00000418501 RELQ04864 619 aaPredicted RBP6.73□□□□□ -1.33
USP54-203ENST00000418501 OR10W1Q8NGF6 305 aa6.73□□□□□ -1.33
USP54-203ENST00000418501 OR1B1Q8NGR6 318 aa6.73□□□□□ -1.33
USP54-203ENST00000418501 VN1R17PQ8TDU5 208 aa6.73□□□□□ -1.33
USP54-203ENST00000418501 PAXXQ9BUH6 204 aa6.73□□□□□ -1.33
USP54-203ENST00000418501 TRAV40A0A0B4J280 105 aa6.73□□□□□ -1.33
USP54-203ENST00000418501 PAGE4O60829 102 aa6.73□□□□□ -1.33
USP54-203ENST00000418501 AKR1C3P42330 323 aa6.73□□□□□ -1.33
USP54-203ENST00000418501 SPNS3Q6ZMD2 512 aa6.73□□□□□ -1.33
USP54-203ENST00000418501 ZNF295-AS1Q8N0V1 137 aa6.73□□□□□ -1.33
USP54-203ENST00000418501 GRAMD2BQ96HH9 432 aa6.73□□□□□ -1.33
USP54-203ENST00000418501 GSN-AS1Q9NRJ2 163 aa6.73□□□□□ -1.33
USP54-203ENST00000418501 C21orf62Q9NYP8 219 aa6.73□□□□□ -1.33
USP54-203ENST00000418501 TANC2Q9HCD6 1990 aa6.73□□□□□ -1.33
USP54-203ENST00000418501 CACNA1BQ00975 2339 aa6.73□□□□□ -1.33
USP54-203ENST00000418501 PRR14LQ5THK1 2151 aa6.72□□□□□ -1.33
USP54-203ENST00000418501 IGHV4-61A0A0C4DH41 118 aa6.72□□□□□ -1.33
USP54-203ENST00000418501 C1orf196B1AJZ1 125 aa6.72□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 82.4 ms