RNA–Protein interactions for RNA: ENST00000413601.3

LIMS4-201, Transcript of LIM zinc finger domain containing 4, humanhuman

TSL 1 (best) BASIC

Gene LIMS4, Length 1,215 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS4-201ENST00000413601 ZNF436Q9C0F3 470 aaPredicted RBP11.19□□□□□ -0.62
LIMS4-201ENST00000413601 TECRQ9NZ01 308 aaKnown RBP11.19□□□□□ -0.62
LIMS4-201ENST00000413601 PRR13Q9NZ81 148 aa11.19□□□□□ -0.62
LIMS4-201ENST00000413601 MT-CO2P00403 227 aa11.18□□□□□ -0.62
LIMS4-201ENST00000413601 ADMP35318 185 aa11.18□□□□□ -0.62
LIMS4-201ENST00000413601 FAUP35544 74 aaKnown RBP11.18□□□□□ -0.62
LIMS4-201ENST00000413601 SNCAP37840 140 aa11.18□□□□□ -0.62
LIMS4-201ENST00000413601 AP3S2P59780 193 aa11.18□□□□□ -0.62
LIMS4-201ENST00000413601 GUCA2BQ16661 112 aa11.18□□□□□ -0.62
LIMS4-201ENST00000413601 SPANXN2Q5MJ10 180 aa11.18□□□□□ -0.62
LIMS4-201ENST00000413601 SPSB3Q6PJ21 355 aa11.18□□□□□ -0.62
LIMS4-201ENST00000413601 FAM219AQ8IW50 185 aa11.18□□□□□ -0.62
LIMS4-201ENST00000413601 ATP6V0BQ99437 205 aa11.18□□□□□ -0.62
LIMS4-201ENST00000413601 PALMDQ9NP74 551 aa11.18□□□□□ -0.62
LIMS4-201ENST00000413601 CTNNBIP1Q9NSA3 81 aaPredicted RBP11.18□□□□□ -0.62
LIMS4-201ENST00000413601 MLXQ9UH92 298 aa11.18□□□□□ -0.62
LIMS4-201ENST00000413601 KCNIP3Q9Y2W7 256 aa11.18□□□□□ -0.62
LIMS4-201ENST00000413601 TMEM56-RWDD3S4R434 201 aa11.18□□□□□ -0.62
LIMS4-201ENST00000413601 U3KQK5 164 aa11.18□□□□□ -0.62
LIMS4-201ENST00000413601 DNAH9Q9NYC9 4486 aa11.17□□□□□ -0.62
LIMS4-201ENST00000413601 IGHV3OR16-8A0A075B7F1 116 aa11.17□□□□□ -0.62
LIMS4-201ENST00000413601 INS-IGF2F8WCM5 200 aa11.17□□□□□ -0.62
LIMS4-201ENST00000413601 CTSGP08311 255 aa11.17□□□□□ -0.62
LIMS4-201ENST00000413601 HOXA1P49639 335 aaPredicted RBP11.17□□□□□ -0.62
LIMS4-201ENST00000413601 MFAP4P55083 255 aa11.17□□□□□ -0.62
LIMS4-201ENST00000413601 SUPT4H1P63272 117 aaKnown RBP11.17□□□□□ -0.62
LIMS4-201ENST00000413601 TMEM187Q14656 261 aa11.17□□□□□ -0.62
LIMS4-201ENST00000413601 GPR146Q96CH1 333 aa11.17□□□□□ -0.62
LIMS4-201ENST00000413601 WDR89Q96FK6 387 aaPredicted RBP11.17□□□□□ -0.62
LIMS4-201ENST00000413601 GALNT14Q96FL9 552 aa11.17□□□□□ -0.62
LIMS4-201ENST00000413601 ENY2Q9NPA8 101 aa11.17□□□□□ -0.62
LIMS4-201ENST00000413601 C19orf73Q9NVV2 129 aa11.17□□□□□ -0.62
LIMS4-201ENST00000413601 CACNG5Q9UF02 275 aa11.17□□□□□ -0.62
LIMS4-201ENST00000413601 UFC1Q9Y3C8 167 aa11.17□□□□□ -0.62
LIMS4-201ENST00000413601 A8MZ25 164 aa11.16□□□□□ -0.62
LIMS4-201ENST00000413601 C8orf88P0DMB2 117 aa11.16□□□□□ -0.62
LIMS4-201ENST00000413601 ELLP55199 621 aaPredicted RBP11.16□□□□□ -0.62
LIMS4-201ENST00000413601 CD81P60033 236 aa11.16□□□□□ -0.62
LIMS4-201ENST00000413601 SPCS3P61009 180 aa11.16□□□□□ -0.62
LIMS4-201ENST00000413601 ZNF57Q68EA5 555 aaPredicted RBP11.16□□□□□ -0.62
LIMS4-201ENST00000413601 BTNL8Q6UX41 500 aa11.16□□□□□ -0.62
LIMS4-201ENST00000413601 TMEM61Q8N0U2 210 aa11.16□□□□□ -0.62
LIMS4-201ENST00000413601 TMEM190Q8WZ59 177 aa11.16□□□□□ -0.62
LIMS4-201ENST00000413601 C20orf24Q9BUV8 137 aa11.16□□□□□ -0.62
LIMS4-201ENST00000413601 SRRQ9GZT4 340 aa11.16□□□□□ -0.62
LIMS4-201ENST00000413601 PLA2G2EQ9NZK7 142 aa11.16□□□□□ -0.62
LIMS4-201ENST00000413601 MRPL27Q9P0M9 148 aaKnown RBP11.16□□□□□ -0.62
LIMS4-201ENST00000413601 NDUFA4O00483 81 aa11.15□□□□□ -0.62
LIMS4-201ENST00000413601 NUPL2O15504 423 aaKnown RBP11.15□□□□□ -0.62
LIMS4-201ENST00000413601 CD7P09564 240 aa11.15□□□□□ -0.62
LIMS4-201ENST00000413601 RNASE2P10153 161 aaKnown RBP11.15□□□□□ -0.62
LIMS4-201ENST00000413601 SUB1P53999 127 aaKnown RBP eCLIP11.15□□□□□ -0.62
LIMS4-201ENST00000413601 AARDQ4LEZ3 155 aa11.15□□□□□ -0.62
LIMS4-201ENST00000413601 TMED4Q7Z7H5 227 aa11.15□□□□□ -0.62
LIMS4-201ENST00000413601 MARC2Q969Z3 335 aa11.15□□□□□ -0.62
LIMS4-201ENST00000413601 ZNF414Q96IQ9 312 aa11.15□□□□□ -0.62
LIMS4-201ENST00000413601 TXN2Q99757 166 aa11.15□□□□□ -0.62
LIMS4-201ENST00000413601 NEURL2Q9BR09 285 aa11.15□□□□□ -0.62
LIMS4-201ENST00000413601 TUBA4BQ9H853 241 aa11.15□□□□□ -0.62
LIMS4-201ENST00000413601 GAR1Q9NY12 217 aaKnown RBP11.15□□□□□ -0.62
LIMS4-201ENST00000413601 ZNF207O43670 478 aaKnown RBP11.14□□□□□ -0.63
LIMS4-201ENST00000413601 GNG7O60262 68 aa11.14□□□□□ -0.63
LIMS4-201ENST00000413601 SCAF4O95104 1147 aaKnown RBP11.14□□□□□ -0.63
LIMS4-201ENST00000413601 NXPH3O95157 252 aa11.14□□□□□ -0.63
LIMS4-201ENST00000413601 FCGR2BP31994 310 aaPredicted RBP11.14□□□□□ -0.63
LIMS4-201ENST00000413601 PVRIGQ6DKI7 326 aa11.14□□□□□ -0.63
LIMS4-201ENST00000413601 LYZL2Q7Z4W2 148 aa11.14□□□□□ -0.63
LIMS4-201ENST00000413601 OR52E5Q8NH55 327 aa11.14□□□□□ -0.63
LIMS4-201ENST00000413601 DEDD2Q8WXF8 326 aa11.14□□□□□ -0.63
LIMS4-201ENST00000413601 IL22RA2Q969J5 263 aa11.14□□□□□ -0.63
LIMS4-201ENST00000413601 WWC2-AS2Q96NR7 200 aa11.14□□□□□ -0.63
LIMS4-201ENST00000413601 DAZ1Q9NQZ3 744 aaKnown RBP11.14□□□□□ -0.63
LIMS4-201ENST00000413601 SULT1A3P0DMM9 295 aa11.13□□□□□ -0.63
LIMS4-201ENST00000413601 SULT1A4P0DMN0 295 aa11.13□□□□□ -0.63
LIMS4-201ENST00000413601 ANXA3P12429 323 aa11.13□□□□□ -0.63
LIMS4-201ENST00000413601 RELQ04864 619 aaPredicted RBP11.13□□□□□ -0.63
LIMS4-201ENST00000413601 BAK1Q16611 211 aa11.13□□□□□ -0.63
LIMS4-201ENST00000413601 BSXQ3C1V8 233 aa11.13□□□□□ -0.63
LIMS4-201ENST00000413601 LGI3Q8N145 548 aa11.13□□□□□ -0.63
LIMS4-201ENST00000413601 DUSP18Q8NEJ0 188 aa11.13□□□□□ -0.63
LIMS4-201ENST00000413601 SLC25A21Q9BQT8 299 aaPredicted RBP11.13□□□□□ -0.63
LIMS4-201ENST00000413601 WFDC10AQ9H1F0 79 aa11.13□□□□□ -0.63
LIMS4-201ENST00000413601 HEYLQ9NQ87 328 aaPredicted RBP11.13□□□□□ -0.63
LIMS4-201ENST00000413601 NDUFA13Q9P0J0 144 aa11.13□□□□□ -0.63
LIMS4-201ENST00000413601 A0A0B4J2A0 478 aa11.12□□□□□ -0.63
LIMS4-201ENST00000413601 CEBPZOSA8MTT3 80 aa11.12□□□□□ -0.63
LIMS4-201ENST00000413601 K7EMT4 169 aa11.12□□□□□ -0.63
LIMS4-201ENST00000413601 CORTO00230 105 aa11.12□□□□□ -0.63
LIMS4-201ENST00000413601 YIF1AO95070 293 aa11.12□□□□□ -0.63
LIMS4-201ENST00000413601 INPP1P49441 399 aa11.12□□□□□ -0.63
LIMS4-201ENST00000413601 MLANAQ16655 118 aa11.12□□□□□ -0.63
LIMS4-201ENST00000413601 TMEM128Q5BJH2 165 aa11.12□□□□□ -0.63
LIMS4-201ENST00000413601 RBPMS2Q6ZRY4 209 aaKnown RBP11.12□□□□□ -0.63
LIMS4-201ENST00000413601 DEFB125Q8N687 156 aa11.12□□□□□ -0.63
LIMS4-201ENST00000413601 RCHY1Q96PM5 261 aa11.12□□□□□ -0.63
LIMS4-201ENST00000413601 SDHCQ99643 169 aaPredicted RBP11.12□□□□□ -0.63
LIMS4-201ENST00000413601 FNDC4Q9H6D8 234 aaPredicted RBP11.12□□□□□ -0.63
LIMS4-201ENST00000413601 ZMAT4Q9H898 229 aa11.12□□□□□ -0.63
LIMS4-201ENST00000413601 SHPKQ9UHJ6 478 aa11.12□□□□□ -0.63
LIMS4-201ENST00000413601 TRAV25A0A0B4J276 109 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms