RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 GAGE2DQ9UEU5 116 aa5.1□□□□□ -1.59
SCN1A-203ENST00000409050 MYH14Q7Z406 1995 aaKnown RBP5.1□□□□□ -1.59
SCN1A-203ENST00000409050 NTN1O95631 604 aa5.1□□□□□ -1.59
SCN1A-203ENST00000409050 PLAUP00749 431 aa5.1□□□□□ -1.59
SCN1A-203ENST00000409050 TMEM42Q69YG0 159 aa5.1□□□□□ -1.59
SCN1A-203ENST00000409050 CCL19Q99731 98 aa5.1□□□□□ -1.59
SCN1A-203ENST00000409050 PGPEP1Q9NXJ5 209 aa5.1□□□□□ -1.59
SCN1A-203ENST00000409050 MSGN1A6NI15 193 aa5.1□□□□□ -1.59
SCN1A-203ENST00000409050 CSRP1P21291 193 aaKnown RBP5.1□□□□□ -1.59
SCN1A-203ENST00000409050 MORN2Q502X0 79 aa5.1□□□□□ -1.59
SCN1A-203ENST00000409050 HAPLN4Q86UW8 402 aa5.1□□□□□ -1.59
SCN1A-203ENST00000409050 COQ2Q96H96 371 aa5.1□□□□□ -1.59
SCN1A-203ENST00000409050 CITED1Q99966 193 aa5.1□□□□□ -1.59
SCN1A-203ENST00000409050 THSD7AQ9UPZ6 1657 aa5.1□□□□□ -1.59
SCN1A-203ENST00000409050 IGHV3-21A0A0B4J1V1 117 aa5.1□□□□□ -1.59
SCN1A-203ENST00000409050 HIST1H2BKO60814 126 aa5.1□□□□□ -1.59
SCN1A-203ENST00000409050 APOMO95445 188 aa5.1□□□□□ -1.59
SCN1A-203ENST00000409050 HIST1H2BJP06899 126 aa5.1□□□□□ -1.59
SCN1A-203ENST00000409050 RNF224P0DH78 156 aa5.1□□□□□ -1.59
SCN1A-203ENST00000409050 HIST1H2BOP23527 126 aa5.1□□□□□ -1.59
SCN1A-203ENST00000409050 HIST1H2BBP33778 126 aa5.1□□□□□ -1.59
SCN1A-203ENST00000409050 BTCP35070 178 aa5.1□□□□□ -1.59
SCN1A-203ENST00000409050 TIMP3P35625 211 aa5.1□□□□□ -1.59
SCN1A-203ENST00000409050 HIST1H2BDP58876 126 aa5.1□□□□□ -1.59
SCN1A-203ENST00000409050 HIST1H2BCP62807 126 aa5.1□□□□□ -1.59
SCN1A-203ENST00000409050 HIST2H2BEQ16778 126 aa5.1□□□□□ -1.59
SCN1A-203ENST00000409050 HIST2H2BFQ5QNW6 126 aaPredicted RBP5.1□□□□□ -1.59
SCN1A-203ENST00000409050 LY6G6FQ5SQ64 297 aa5.1□□□□□ -1.59
SCN1A-203ENST00000409050 HIST3H2BBQ8N257 126 aa5.1□□□□□ -1.59
SCN1A-203ENST00000409050 HIST1H2BHQ93079 126 aa5.1□□□□□ -1.59
SCN1A-203ENST00000409050 HIST1H2BNQ99877 126 aa5.1□□□□□ -1.59
SCN1A-203ENST00000409050 HIST1H2BMQ99879 126 aa5.1□□□□□ -1.59
SCN1A-203ENST00000409050 LOC102724200A0A096LPH7 203 aaPredicted RBP5.09□□□□□ -1.59
SCN1A-203ENST00000409050 CD5LO43866 347 aa5.09□□□□□ -1.59
SCN1A-203ENST00000409050 INAFM2P0DMQ5 153 aa5.09□□□□□ -1.59
SCN1A-203ENST00000409050 TFF3Q07654 80 aa5.09□□□□□ -1.59
SCN1A-203ENST00000409050 C3orf36Q3SXR2 165 aa5.09□□□□□ -1.59
SCN1A-203ENST00000409050 MIR17HGQ75NE6 70 aa5.09□□□□□ -1.59
SCN1A-203ENST00000409050 USMG5Q96IX5 58 aa5.09□□□□□ -1.59
SCN1A-203ENST00000409050 C1QTNF4Q9BXJ3 329 aa5.09□□□□□ -1.59
SCN1A-203ENST00000409050 WNT10AQ9GZT5 417 aa5.09□□□□□ -1.59
SCN1A-203ENST00000409050 ZNF492Q9P255 531 aa5.09□□□□□ -1.59
SCN1A-203ENST00000409050 RFNGQ9Y644 331 aa5.09□□□□□ -1.59
SCN1A-203ENST00000409050 SCN1AP35498 2009 aa5.09□□□□□ -1.59
SCN1A-203ENST00000409050 SCN9AQ15858 1988 aa5.09□□□□□ -1.59
SCN1A-203ENST00000409050 IGKV3-7A0A075B6H7 116 aa5.09□□□□□ -1.59
SCN1A-203ENST00000409050 TRBV20-1A0A075B6N2 111 aa5.09□□□□□ -1.59
SCN1A-203ENST00000409050 H3BUT2 72 aa5.09□□□□□ -1.59
SCN1A-203ENST00000409050 M0R1W7 72 aa5.09□□□□□ -1.59
SCN1A-203ENST00000409050 M0R2P5 195 aa5.09□□□□□ -1.59
SCN1A-203ENST00000409050 VCYO14598 125 aa5.09□□□□□ -1.59
SCN1A-203ENST00000409050 SAA1P0DJI8 122 aaPredicted RBP5.09□□□□□ -1.59
SCN1A-203ENST00000409050 ATP5G3P48201 142 aa5.09□□□□□ -1.59
SCN1A-203ENST00000409050 FAM74A4Q5TZK3 123 aa5.09□□□□□ -1.59
SCN1A-203ENST00000409050 SPRED2Q7Z698 418 aa5.09□□□□□ -1.59
SCN1A-203ENST00000409050 OR13A1Q8NGR1 328 aa5.09□□□□□ -1.59
SCN1A-203ENST00000409050 WBP1Q96G27 269 aa5.09□□□□□ -1.59
SCN1A-203ENST00000409050 RGPD3A6NKT7 1758 aaPredicted RBP5.09□□□□□ -1.59
SCN1A-203ENST00000409050 IGHV3-72A0A0B4J1Y9 119 aa5.09□□□□□ -1.59
SCN1A-203ENST00000409050 ZIC3O60481 467 aa5.09□□□□□ -1.59
SCN1A-203ENST00000409050 DUTP33316 252 aaKnown RBP5.09□□□□□ -1.59
SCN1A-203ENST00000409050 ADMP35318 185 aa5.09□□□□□ -1.59
SCN1A-203ENST00000409050 KLF17Q5JT82 389 aaPredicted RBP5.09□□□□□ -1.59
SCN1A-203ENST00000409050 SAMD5Q5TGI4 173 aa5.09□□□□□ -1.59
SCN1A-203ENST00000409050 TMEM14EPQ6UXP3 125 aa5.09□□□□□ -1.59
SCN1A-203ENST00000409050 DLX4Q92988 240 aaPredicted RBP5.09□□□□□ -1.59
SCN1A-203ENST00000409050 PRADC1Q9BSG0 188 aa5.09□□□□□ -1.59
SCN1A-203ENST00000409050 TRBV7-1A0A0A6YYK4 115 aa5.09□□□□□ -1.6
SCN1A-203ENST00000409050 ZNF815PA8K554 130 aa5.09□□□□□ -1.6
SCN1A-203ENST00000409050 M0R381 172 aa5.09□□□□□ -1.6
SCN1A-203ENST00000409050 SP9P0CG40 484 aa5.09□□□□□ -1.6
SCN1A-203ENST00000409050 TDGF1P13385 188 aa5.09□□□□□ -1.6
SCN1A-203ENST00000409050 EFNB3Q15768 340 aa5.09□□□□□ -1.6
SCN1A-203ENST00000409050 IL17RELQ6ZVW7 336 aa5.09□□□□□ -1.6
SCN1A-203ENST00000409050 LDLRAD4O15165 306 aa5.08□□□□□ -1.6
SCN1A-203ENST00000409050 CRYGSP22914 178 aa5.08□□□□□ -1.6
SCN1A-203ENST00000409050 Q0VG73 95 aa5.08□□□□□ -1.6
SCN1A-203ENST00000409050 ACTL10Q5JWF8 245 aa5.08□□□□□ -1.6
SCN1A-203ENST00000409050 HIST1H2BLQ99880 126 aa5.08□□□□□ -1.6
SCN1A-203ENST00000409050 MRPL20Q9BYC9 149 aaKnown RBP5.08□□□□□ -1.6
SCN1A-203ENST00000409050 TNKS1BP1Q9C0C2 1729 aaKnown RBP5.08□□□□□ -1.6
SCN1A-203ENST00000409050 RPUSD1Q9UJJ7 312 aaKnown RBP5.08□□□□□ -1.6
SCN1A-203ENST00000409050 RAMP1O60894 148 aa5.08□□□□□ -1.6
SCN1A-203ENST00000409050 TFPI2P48307 235 aa5.08□□□□□ -1.6
SCN1A-203ENST00000409050 FOXA3P55318 350 aaPredicted RBP5.08□□□□□ -1.6
SCN1A-203ENST00000409050 RPL39P5Q59GN2 51 aa5.08□□□□□ -1.6
SCN1A-203ENST00000409050 PKIGQ9Y2B9 76 aa5.08□□□□□ -1.6
SCN1A-203ENST00000409050 RBBP6Q7Z6E9 1792 aaKnown RBP5.08□□□□□ -1.6
SCN1A-203ENST00000409050 FAM223BA6NKX1 122 aa5.08□□□□□ -1.6
SCN1A-203ENST00000409050 IGKV1D-33P01593 117 aa5.08□□□□□ -1.6
SCN1A-203ENST00000409050 IGKV1-33P01594 117 aa5.08□□□□□ -1.6
SCN1A-203ENST00000409050 PRSS12P56730 875 aa5.08□□□□□ -1.6
SCN1A-203ENST00000409050 Q5BKY6 102 aa5.08□□□□□ -1.6
SCN1A-203ENST00000409050 FAM223AQ8IWN6 122 aa5.08□□□□□ -1.6
SCN1A-203ENST00000409050 FBXL15Q9H469 300 aa5.08□□□□□ -1.6
SCN1A-203ENST00000409050 DPH3P1Q9H4G8 78 aa5.08□□□□□ -1.6
SCN1A-203ENST00000409050 MYMXA0A1B0GTQ4 84 aa5.08□□□□□ -1.6
SCN1A-203ENST00000409050 A0A1B0GWJ7 208 aa5.08□□□□□ -1.6
SCN1A-203ENST00000409050 LYPD3O95274 346 aa5.08□□□□□ -1.6
SCN1A-203ENST00000409050 MALP21145 153 aa5.08□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 59.6 ms