RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 HLA-DQA1P01909 254 aa9.17□□□□□ -0.94
CUX1-204ENST00000393824 OPRK1P41145 380 aa9.17□□□□□ -0.94
CUX1-204ENST00000393824 Q6P435 159 aa9.17□□□□□ -0.94
CUX1-204ENST00000393824 ZNF439Q8NDP4 499 aa9.17□□□□□ -0.94
CUX1-204ENST00000393824 MEGF9Q9H1U4 602 aa9.17□□□□□ -0.94
CUX1-204ENST00000393824 PSG1P11464 419 aa9.17□□□□□ -0.94
CUX1-204ENST00000393824 IGLL1P15814 213 aa9.17□□□□□ -0.94
CUX1-204ENST00000393824 G6PCP35575 357 aa9.17□□□□□ -0.94
CUX1-204ENST00000393824 GABRA2P47869 451 aa9.17□□□□□ -0.94
CUX1-204ENST00000393824 FAM27E3Q08E93 113 aa9.17□□□□□ -0.94
CUX1-204ENST00000393824 GABRA6Q16445 453 aa9.17□□□□□ -0.94
CUX1-204ENST00000393824 ZNF497Q6ZNH5 498 aa9.17□□□□□ -0.94
CUX1-204ENST00000393824 SCCPDHQ8NBX0 429 aa9.17□□□□□ -0.94
CUX1-204ENST00000393824 FAM216AQ8WUB2 273 aa9.17□□□□□ -0.94
CUX1-204ENST00000393824 ZDHHC16Q969W1 377 aa9.17□□□□□ -0.94
CUX1-204ENST00000393824 MBNL3Q9NUK0 354 aaKnown RBP9.17□□□□□ -0.94
CUX1-204ENST00000393824 CLEC5AQ9NY25 188 aa9.17□□□□□ -0.94
CUX1-204ENST00000393824 YTHDF2Q9Y5A9 579 aaKnown RBP9.17□□□□□ -0.94
CUX1-204ENST00000393824 LOC102724200A0A096LPH7 203 aaPredicted RBP9.16□□□□□ -0.94
CUX1-204ENST00000393824 C5orf49A4QMS7 147 aa9.16□□□□□ -0.94
CUX1-204ENST00000393824 C22orf46C9J442 243 aa9.16□□□□□ -0.94
CUX1-204ENST00000393824 J3QT63 122 aa9.16□□□□□ -0.94
CUX1-204ENST00000393824 CORTO00230 105 aa9.16□□□□□ -0.94
CUX1-204ENST00000393824 RRHO14718 337 aa9.16□□□□□ -0.94
CUX1-204ENST00000393824 RAMP3O60896 148 aa9.16□□□□□ -0.94
CUX1-204ENST00000393824 AGFG2O95081 481 aa9.16□□□□□ -0.94
CUX1-204ENST00000393824 SRIP30626 198 aa9.16□□□□□ -0.94
CUX1-204ENST00000393824 EDDM3BP56851 147 aa9.16□□□□□ -0.94
CUX1-204ENST00000393824 KIAA1644Q3SXP7 199 aa9.16□□□□□ -0.94
CUX1-204ENST00000393824 Q8IYB0 196 aa9.16□□□□□ -0.94
CUX1-204ENST00000393824 ATOH7Q8N100 152 aa9.16□□□□□ -0.94
CUX1-204ENST00000393824 FAM19A2Q8N3H0 131 aa9.16□□□□□ -0.94
CUX1-204ENST00000393824 CRIM1Q9NZV1 1036 aa9.16□□□□□ -0.94
CUX1-204ENST00000393824 PROCRQ9UNN8 238 aa9.16□□□□□ -0.94
CUX1-204ENST00000393824 ANKHD1Q8IWZ3 2542 aaKnown RBP9.16□□□□□ -0.94
CUX1-204ENST00000393824 CRYBG3Q68DQ2 2970 aa9.16□□□□□ -0.94
CUX1-204ENST00000393824 C15orf62A8K5M9 175 aa9.16□□□□□ -0.94
CUX1-204ENST00000393824 CDIPTO14735 213 aa9.16□□□□□ -0.94
CUX1-204ENST00000393824 TAX1BP3O14907 124 aa9.16□□□□□ -0.94
CUX1-204ENST00000393824 RAB29O14966 203 aa9.16□□□□□ -0.94
CUX1-204ENST00000393824 LINC00869P0C866 280 aa9.16□□□□□ -0.94
CUX1-204ENST00000393824 LCN12Q6JVE5 192 aa9.16□□□□□ -0.94
CUX1-204ENST00000393824 MDP1Q86V88 176 aa9.16□□□□□ -0.94
CUX1-204ENST00000393824 WDR31Q8NA23 367 aa9.16□□□□□ -0.94
CUX1-204ENST00000393824 OR8B3Q8NGG8 313 aa9.16□□□□□ -0.94
CUX1-204ENST00000393824 OR4S2Q8NH73 311 aa9.16□□□□□ -0.94
CUX1-204ENST00000393824 OR8B2Q96RD0 313 aa9.16□□□□□ -0.94
CUX1-204ENST00000393824 OR2D2Q9H210 308 aa9.16□□□□□ -0.94
CUX1-204ENST00000393824 OSTCQ9NRP0 149 aa9.16□□□□□ -0.94
CUX1-204ENST00000393824 LRRK2Q5S007 2527 aa9.15□□□□□ -0.94
CUX1-204ENST00000393824 HRNRQ86YZ3 2850 aaPredicted RBP9.15□□□□□ -0.94
CUX1-204ENST00000393824 CSMD2Q7Z408 3487 aa9.15□□□□□ -0.94
CUX1-204ENST00000393824 J3QR06 171 aa9.15□□□□□ -0.94
CUX1-204ENST00000393824 CLDN14O95500 239 aa9.15□□□□□ -0.94
CUX1-204ENST00000393824 AMY1AP04745 511 aa9.15□□□□□ -0.94
CUX1-204ENST00000393824 AREGP15514 252 aa9.15□□□□□ -0.94
CUX1-204ENST00000393824 CA7P43166 264 aa9.15□□□□□ -0.94
CUX1-204ENST00000393824 RPS16P62249 146 aaKnown RBP9.15□□□□□ -0.94
CUX1-204ENST00000393824 EIF4EBP1Q13541 118 aaPredicted RBP9.15□□□□□ -0.94
CUX1-204ENST00000393824 TCF24Q7RTU0 167 aa9.15□□□□□ -0.94
CUX1-204ENST00000393824 WFDC8Q8IUA0 241 aa9.15□□□□□ -0.94
CUX1-204ENST00000393824 ZNF596Q8TC21 504 aa9.15□□□□□ -0.94
CUX1-204ENST00000393824 POM121L2Q96KW2 1035 aa9.15□□□□□ -0.94
CUX1-204ENST00000393824 PLCE1Q9P212 2302 aa9.15□□□□□ -0.94
CUX1-204ENST00000393824 CCNOP22674 350 aa9.15□□□□□ -0.95
CUX1-204ENST00000393824 RBPJQ06330 500 aa9.15□□□□□ -0.95
CUX1-204ENST00000393824 SCGB2A2Q13296 93 aa9.15□□□□□ -0.95
CUX1-204ENST00000393824 SPATA46Q5T0L3 261 aa9.15□□□□□ -0.95
CUX1-204ENST00000393824 ZNF645Q8N7E2 425 aa9.15□□□□□ -0.95
CUX1-204ENST00000393824 SMPXQ9UHP9 88 aa9.15□□□□□ -0.95
CUX1-204ENST00000393824 TRAPPC2LQ9UL33 140 aa9.15□□□□□ -0.95
CUX1-204ENST00000393824 FAM208BQ5VWN6 2430 aa9.14□□□□□ -0.95
CUX1-204ENST00000393824 TOX4O94842 621 aa9.14□□□□□ -0.95
CUX1-204ENST00000393824 NGFP01138 241 aa9.14□□□□□ -0.95
CUX1-204ENST00000393824 GCHFRP30047 84 aa9.14□□□□□ -0.95
CUX1-204ENST00000393824 ADORA2A-AS1P86434 159 aa9.14□□□□□ -0.95
CUX1-204ENST00000393824 PLP2Q04941 152 aa9.14□□□□□ -0.95
CUX1-204ENST00000393824 CATR1Q13166 79 aa9.14□□□□□ -0.95
CUX1-204ENST00000393824 TREML4Q6UXN2 200 aa9.14□□□□□ -0.95
CUX1-204ENST00000393824 DEFB125Q8N687 156 aa9.14□□□□□ -0.95
CUX1-204ENST00000393824 C18orf32Q8TCD1 76 aa9.14□□□□□ -0.95
CUX1-204ENST00000393824 VKORC1Q9BQB6 163 aa9.14□□□□□ -0.95
CUX1-204ENST00000393824 ICE1Q9Y2F5 2266 aa9.14□□□□□ -0.95
CUX1-204ENST00000393824 CCL21O00585 134 aa9.14□□□□□ -0.95
CUX1-204ENST00000393824 TACC2O95359 2948 aa9.14□□□□□ -0.95
CUX1-204ENST00000393824 NTF3P20783 257 aa9.14□□□□□ -0.95
CUX1-204ENST00000393824 GRNP28799 593 aaKnown RBP9.14□□□□□ -0.95
CUX1-204ENST00000393824 BRWD1-AS2P59051 145 aa9.14□□□□□ -0.95
CUX1-204ENST00000393824 RPL30P62888 115 aaKnown RBP9.14□□□□□ -0.95
CUX1-204ENST00000393824 PDLIM3Q53GG5 364 aaPredicted RBP9.14□□□□□ -0.95
CUX1-204ENST00000393824 EBLN2Q6P2I7 272 aa9.14□□□□□ -0.95
CUX1-204ENST00000393824 OR52L2PQ8NGH6 319 aa9.14□□□□□ -0.95
CUX1-204ENST00000393824 ZNF488Q96MN9 340 aa9.14□□□□□ -0.95
CUX1-204ENST00000393824 KCNIP1Q9NZI2 227 aa9.14□□□□□ -0.95
CUX1-204ENST00000393824 ARL2-SNX15V9GYD0 113 aa9.14□□□□□ -0.95
CUX1-204ENST00000393824 ABCA4P78363 2273 aa9.13□□□□□ -0.95
CUX1-204ENST00000393824 UBR5O95071 2799 aaPredicted RBP9.13□□□□□ -0.95
CUX1-204ENST00000393824 SMIM27A0A1W2PRY6 76 aa9.13□□□□□ -0.95
CUX1-204ENST00000393824 FAM181BA6NEQ2 426 aa9.13□□□□□ -0.95
CUX1-204ENST00000393824 C2orf70A6NJV1 201 aa9.13□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms