RNA–Protein interactions for RNA: ENST00000384344.1

RNU6-39P-201, Transcript of RNA, U6 small nuclear 39, pseudogene, humanhuman

BASIC

Gene RNU6-39P, Length 107 nt, Biotype snRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-39P-201ENST00000384344 IFITM2Q01629 132 aa0.66□□□□□ -2.3
RNU6-39P-201ENST00000384344 GRK1Q15835 563 aa0.66□□□□□ -2.3
RNU6-39P-201ENST00000384344 CLVS2Q5SYC1 327 aa0.66□□□□□ -2.3
RNU6-39P-201ENST00000384344 LRRN1Q6UXK5 716 aa0.66□□□□□ -2.3
RNU6-39P-201ENST00000384344 C10orf67Q8IYJ2 551 aa0.66□□□□□ -2.3
RNU6-39P-201ENST00000384344 ZNF439Q8NDP4 499 aa0.66□□□□□ -2.3
RNU6-39P-201ENST00000384344 CNBD2Q96M20 576 aa0.66□□□□□ -2.3
RNU6-39P-201ENST00000384344 UPF3BQ9BZI7 483 aaKnown RBP0.66□□□□□ -2.3
RNU6-39P-201ENST00000384344 EFCAB1Q9HAE3 211 aa0.66□□□□□ -2.3
RNU6-39P-201ENST00000384344 LRP5O75197 1615 aa0.66□□□□□ -2.3
RNU6-39P-201ENST00000384344 KIF24Q5T7B8 1368 aa0.66□□□□□ -2.3
RNU6-39P-201ENST00000384344 ARFGEF3Q5TH69 2177 aa0.66□□□□□ -2.3
RNU6-39P-201ENST00000384344 MGAM2Q2M2H8 2515 aa0.66□□□□□ -2.3
RNU6-39P-201ENST00000384344 BICRAQ9NZM4 1560 aa0.66□□□□□ -2.3
RNU6-39P-201ENST00000384344 TTC21AQ8NDW8 1320 aa0.65□□□□□ -2.3
RNU6-39P-201ENST00000384344 TENM3Q9P273 2699 aa0.65□□□□□ -2.3
RNU6-39P-201ENST00000384344 SPEGQ15772 3267 aa0.65□□□□□ -2.31
RNU6-39P-201ENST00000384344 COCHO43405 550 aa0.65□□□□□ -2.31
RNU6-39P-201ENST00000384344 CASQ1P31415 396 aa0.65□□□□□ -2.31
RNU6-39P-201ENST00000384344 MAP2K4P45985 399 aa0.65□□□□□ -2.31
RNU6-39P-201ENST00000384344 MARCKSL1P49006 195 aa0.65□□□□□ -2.31
RNU6-39P-201ENST00000384344 ZNF80P51504 273 aaPredicted RBP0.65□□□□□ -2.31
RNU6-39P-201ENST00000384344 SUPT4H1P63272 117 aaKnown RBP0.65□□□□□ -2.31
RNU6-39P-201ENST00000384344 UBE2IP63279 158 aaKnown RBP0.65□□□□□ -2.31
RNU6-39P-201ENST00000384344 COQ5Q5HYK3 327 aa0.65□□□□□ -2.31
RNU6-39P-201ENST00000384344 C1orf195Q5TG92 126 aa0.65□□□□□ -2.31
RNU6-39P-201ENST00000384344 ZNF550Q7Z398 422 aa0.65□□□□□ -2.31
RNU6-39P-201ENST00000384344 USE1Q9NZ43 259 aa0.65□□□□□ -2.31
RNU6-39P-201ENST00000384344 CKLFQ9UBR5 152 aa0.65□□□□□ -2.31
RNU6-39P-201ENST00000384344 TPRP12270 2363 aaKnown RBP0.65□□□□□ -2.31
RNU6-39P-201ENST00000384344 MICAL3Q7RTP6 2002 aa0.65□□□□□ -2.31
RNU6-39P-201ENST00000384344 MTORP42345 2549 aa0.65□□□□□ -2.31
RNU6-39P-201ENST00000384344 TECTAO75443 2155 aa0.64□□□□□ -2.31
RNU6-39P-201ENST00000384344 CSMD1Q96PZ7 3565 aa0.64□□□□□ -2.31
RNU6-39P-201ENST00000384344 CEP250Q9BV73 2442 aa0.64□□□□□ -2.31
RNU6-39P-201ENST00000384344 TRBV20OR9-2A0A075B6H5 130 aa0.64□□□□□ -2.31
RNU6-39P-201ENST00000384344 TRBV6-7A0A0A0MS04 114 aa0.64□□□□□ -2.31
RNU6-39P-201ENST00000384344 M0QZ92 97 aa0.64□□□□□ -2.31
RNU6-39P-201ENST00000384344 BRS3P32247 399 aa0.64□□□□□ -2.31
RNU6-39P-201ENST00000384344 MLLT11Q13015 90 aaPredicted RBP0.64□□□□□ -2.31
RNU6-39P-201ENST00000384344 ZNF846Q147U1 533 aa0.64□□□□□ -2.31
RNU6-39P-201ENST00000384344 SYPL2Q5VXT5 272 aa0.64□□□□□ -2.31
RNU6-39P-201ENST00000384344 PDPK2PQ6A1A2 396 aa0.64□□□□□ -2.31
RNU6-39P-201ENST00000384344 LCN15Q6UWW0 184 aa0.64□□□□□ -2.31
RNU6-39P-201ENST00000384344 FAM151BQ6UXP7 276 aa0.64□□□□□ -2.31
RNU6-39P-201ENST00000384344 DEFB125Q8N687 156 aa0.64□□□□□ -2.31
RNU6-39P-201ENST00000384344 OR4D11Q8NGI4 311 aa0.64□□□□□ -2.31
RNU6-39P-201ENST00000384344 RASSF5Q8WWW0 418 aa0.64□□□□□ -2.31
RNU6-39P-201ENST00000384344 LINC00526Q96FQ7 95 aa0.64□□□□□ -2.31
RNU6-39P-201ENST00000384344 GINS4Q9BRT9 223 aa0.64□□□□□ -2.31
RNU6-39P-201ENST00000384344 CEP164Q9UPV0 1460 aa0.64□□□□□ -2.31
RNU6-39P-201ENST00000384344 GLI3P10071 1580 aa0.64□□□□□ -2.31
RNU6-39P-201ENST00000384344 RIF1Q5UIP0 2472 aaKnown RBP0.64□□□□□ -2.31
RNU6-39P-201ENST00000384344 DCCP43146 1447 aa0.64□□□□□ -2.31
RNU6-39P-201ENST00000384344 MUC16Q8WXI7 14507 aa0.63□□□□□ -2.31
RNU6-39P-201ENST00000384344 POLEQ07864 2286 aa0.63□□□□□ -2.31
RNU6-39P-201ENST00000384344 CELSR2Q9HCU4 2923 aa0.63□□□□□ -2.31
RNU6-39P-201ENST00000384344 ITPR2Q14571 2701 aa0.63□□□□□ -2.31
RNU6-39P-201ENST00000384344 ROS1P08922 2347 aa0.63□□□□□ -2.31
RNU6-39P-201ENST00000384344 LRRN3E7EW58 273 aa0.63□□□□□ -2.31
RNU6-39P-201ENST00000384344 CXCR6O00574 342 aa0.63□□□□□ -2.31
RNU6-39P-201ENST00000384344 KRT7P08729 469 aa0.63□□□□□ -2.31
RNU6-39P-201ENST00000384344 HTR1AP08908 422 aa0.63□□□□□ -2.31
RNU6-39P-201ENST00000384344 RNASE3P12724 160 aaKnown RBP0.63□□□□□ -2.31
RNU6-39P-201ENST00000384344 CCL20P78556 96 aa0.63□□□□□ -2.31
RNU6-39P-201ENST00000384344 DPPA3Q6W0C5 159 aa0.63□□□□□ -2.31
RNU6-39P-201ENST00000384344 DEFB128Q7Z7B8 93 aa0.63□□□□□ -2.31
RNU6-39P-201ENST00000384344 PHF13Q86YI8 300 aaPredicted RBP0.63□□□□□ -2.31
RNU6-39P-201ENST00000384344 GID4Q8IVV7 300 aa0.63□□□□□ -2.31
RNU6-39P-201ENST00000384344 IQCF2Q8IXL9 164 aa0.63□□□□□ -2.31
RNU6-39P-201ENST00000384344 RAB8BQ92930 207 aa0.63□□□□□ -2.31
RNU6-39P-201ENST00000384344 SCGB3A1Q96QR1 104 aa0.63□□□□□ -2.31
RNU6-39P-201ENST00000384344 NF1P21359 2839 aa0.63□□□□□ -2.31
RNU6-39P-201ENST00000384344 IGF2RP11717 2491 aa0.62□□□□□ -2.31
RNU6-39P-201ENST00000384344 MKI67P46013 3256 aaKnown RBP0.62□□□□□ -2.31
RNU6-39P-201ENST00000384344 GREB1Q4ZG55 1949 aa0.62□□□□□ -2.31
RNU6-39P-201ENST00000384344 TGP01266 2768 aa0.62□□□□□ -2.31
RNU6-39P-201ENST00000384344 H0Y980 276 aa0.62□□□□□ -2.31
RNU6-39P-201ENST00000384344 GOLGA6L19H0YKK7 550 aa0.62□□□□□ -2.31
RNU6-39P-201ENST00000384344 DEXIO95424 95 aa0.62□□□□□ -2.31
RNU6-39P-201ENST00000384344 COX5BP10606 129 aa0.62□□□□□ -2.31
RNU6-39P-201ENST00000384344 MAGEA2P43356 314 aa0.62□□□□□ -2.31
RNU6-39P-201ENST00000384344 MAP3K7CLP57077 242 aa0.62□□□□□ -2.31
RNU6-39P-201ENST00000384344 NAA20P61599 178 aa0.62□□□□□ -2.31
RNU6-39P-201ENST00000384344 SPANXN5Q5MJ07 72 aa0.62□□□□□ -2.31
RNU6-39P-201ENST00000384344 SPANXN3Q5MJ09 141 aa0.62□□□□□ -2.31
RNU6-39P-201ENST00000384344 AADACL3Q5VUY0 350 aa0.62□□□□□ -2.31
RNU6-39P-201ENST00000384344 RPL22L1Q6P5R6 122 aaKnown RBP0.62□□□□□ -2.31
RNU6-39P-201ENST00000384344 KLK9Q9UKQ9 250 aa0.62□□□□□ -2.31
RNU6-39P-201ENST00000384344 LSM5Q9Y4Y9 91 aaKnown RBP0.62□□□□□ -2.31
RNU6-39P-201ENST00000384344 RIMBP3CA6NJZ7 1639 aa0.62□□□□□ -2.31
RNU6-39P-201ENST00000384344 RIMBP3BA6NNM3 1639 aa0.62□□□□□ -2.31
RNU6-39P-201ENST00000384344 RIMBP3Q9UFD9 1639 aa0.62□□□□□ -2.31
RNU6-39P-201ENST00000384344 HEATR5BQ9P2D3 2071 aa0.61□□□□□ -2.31
RNU6-39P-201ENST00000384344 LRBAP50851 2863 aa0.61□□□□□ -2.31
RNU6-39P-201ENST00000384344 A0A0D9SG52 128 aa0.61□□□□□ -2.31
RNU6-39P-201ENST00000384344 A0A0J9YY10 115 aa0.61□□□□□ -2.31
RNU6-39P-201ENST00000384344 LINC00854A0A1B0GVQ3 168 aa0.61□□□□□ -2.31
RNU6-39P-201ENST00000384344 A0A1B0GX78 115 aa0.61□□□□□ -2.31
RNU6-39P-201ENST00000384344 CLDN25C9JDP6 229 aa0.61□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms