RNA–Protein interactions for RNA: ENST00000377861.4

PCDH9-201, Transcript of protocadherin 9, humanhuman

TSL 1 (best) BASIC

Gene PCDH9, Length 28,227 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9-201ENST00000377861 IGLC2P0DOY2 106 aa4.09□□□□□ -1.76
PCDH9-201ENST00000377861 IGLC3P0DOY3 106 aa4.09□□□□□ -1.76
PCDH9-201ENST00000377861 CDKN1BP46527 198 aa4.09□□□□□ -1.76
PCDH9-201ENST00000377861 RFESDQ8TAC1 157 aa4.09□□□□□ -1.76
PCDH9-201ENST00000377861 NDUFA4L2Q9NRX3 87 aa4.09□□□□□ -1.76
PCDH9-201ENST00000377861 IGLV3-9A0A075B6K5 115 aa4.09□□□□□ -1.76
PCDH9-201ENST00000377861 SH2D7A6NKC9 451 aaPredicted RBP4.09□□□□□ -1.76
PCDH9-201ENST00000377861 MISP3Q96FF7 219 aa4.09□□□□□ -1.76
PCDH9-201ENST00000377861 TRAV21A0A0B4J279 112 aa4.08□□□□□ -1.76
PCDH9-201ENST00000377861 CEACAM4O75871 244 aa4.08□□□□□ -1.76
PCDH9-201ENST00000377861 UFC1Q9Y3C8 167 aa4.08□□□□□ -1.76
PCDH9-201ENST00000377861 PDE6GP18545 87 aa4.08□□□□□ -1.76
PCDH9-201ENST00000377861 LYZL4Q96KX0 146 aa4.08□□□□□ -1.76
PCDH9-201ENST00000377861 HDHD3Q9BSH5 251 aaPredicted RBP4.08□□□□□ -1.76
PCDH9-201ENST00000377861 SIGLEC8Q9NYZ4 499 aa4.08□□□□□ -1.76
PCDH9-201ENST00000377861 BRI3O95415 125 aa4.08□□□□□ -1.76
PCDH9-201ENST00000377861 SLAQ13239 276 aa4.08□□□□□ -1.76
PCDH9-201ENST00000377861 PPIAL4GP0DN37 164 aa4.08□□□□□ -1.76
PCDH9-201ENST00000377861 TMEM208Q9BTX3 173 aa4.08□□□□□ -1.76
PCDH9-201ENST00000377861 Q56UQ5 140 aa4.08□□□□□ -1.76
PCDH9-201ENST00000377861 ZNF493Q6ZR52 646 aa4.08□□□□□ -1.76
PCDH9-201ENST00000377861 TMEM171Q8WVE6 324 aa4.08□□□□□ -1.76
PCDH9-201ENST00000377861 CTSBP07858 339 aa4.08□□□□□ -1.76
PCDH9-201ENST00000377861 MNX1P50219 401 aaPredicted RBP4.08□□□□□ -1.76
PCDH9-201ENST00000377861 DEFB125Q8N687 156 aa4.08□□□□□ -1.76
PCDH9-201ENST00000377861 TMEM75Q8N9X5 138 aa4.08□□□□□ -1.76
PCDH9-201ENST00000377861 PLEKHB2Q96CS7 222 aa4.08□□□□□ -1.76
PCDH9-201ENST00000377861 TMUB1Q9BVT8 246 aa4.08□□□□□ -1.76
PCDH9-201ENST00000377861 CCL3L1P16619 93 aa4.08□□□□□ -1.76
PCDH9-201ENST00000377861 NUDT10Q8NFP7 164 aa4.08□□□□□ -1.76
PCDH9-201ENST00000377861 EEF1AKMT3Q96AZ1 226 aa4.08□□□□□ -1.76
PCDH9-201ENST00000377861 IMUPQ9GZP8 106 aa4.08□□□□□ -1.76
PCDH9-201ENST00000377861 SLC25A22Q9H936 323 aa4.08□□□□□ -1.76
PCDH9-201ENST00000377861 ZNF256Q9Y2P7 627 aaPredicted RBP4.08□□□□□ -1.76
PCDH9-201ENST00000377861 NUDT11Q96G61 164 aa4.08□□□□□ -1.76
PCDH9-201ENST00000377861 CHAC1Q9BUX1 264 aa4.08□□□□□ -1.76
PCDH9-201ENST00000377861 A0A0G2JMM0 328 aa4.08□□□□□ -1.76
PCDH9-201ENST00000377861 A0A1W2PPB8 328 aa4.08□□□□□ -1.76
PCDH9-201ENST00000377861 KIR3DP1A8MWS1 328 aa4.08□□□□□ -1.76
PCDH9-201ENST00000377861 MRPL23Q16540 153 aaKnown RBP4.08□□□□□ -1.76
PCDH9-201ENST00000377861 KLF17Q5JT82 389 aaPredicted RBP4.08□□□□□ -1.76
PCDH9-201ENST00000377861 C21orf62Q9NYP8 219 aa4.08□□□□□ -1.76
PCDH9-201ENST00000377861 DTX2Q86UW9 622 aa4.08□□□□□ -1.76
PCDH9-201ENST00000377861 THAP8Q8NA92 274 aa4.08□□□□□ -1.76
PCDH9-201ENST00000377861 ZNF355PQ9NSJ1 428 aa4.08□□□□□ -1.76
PCDH9-201ENST00000377861 A0A1W2PP11 408 aa4.08□□□□□ -1.76
PCDH9-201ENST00000377861 LHBP01229 141 aa4.08□□□□□ -1.76
PCDH9-201ENST00000377861 NMUP48645 174 aa4.08□□□□□ -1.76
PCDH9-201ENST00000377861 PAX9P55771 341 aa4.08□□□□□ -1.76
PCDH9-201ENST00000377861 UBTD1Q9HAC8 227 aa4.08□□□□□ -1.76
PCDH9-201ENST00000377861 CACNA1CQ13936 2221 aa4.08□□□□□ -1.76
PCDH9-201ENST00000377861 LOC105371242A0A075B767 164 aa4.08□□□□□ -1.76
PCDH9-201ENST00000377861 GAGE13Q4V321 117 aa4.08□□□□□ -1.76
PCDH9-201ENST00000377861 COX11Q9Y6N1 276 aa4.08□□□□□ -1.76
PCDH9-201ENST00000377861 IGHV1-69DA0A0B4J2H0 117 aa4.08□□□□□ -1.76
PCDH9-201ENST00000377861 H1FXQ92522 213 aaKnown RBP4.08□□□□□ -1.76
PCDH9-201ENST00000377861 ALKBH7Q9BT30 221 aaPredicted RBP4.08□□□□□ -1.76
PCDH9-201ENST00000377861 CAMPP49913 170 aa4.07□□□□□ -1.76
PCDH9-201ENST00000377861 RNASEKQ6P5S7 137 aaKnown RBP4.07□□□□□ -1.76
PCDH9-201ENST00000377861 CYSLTR1Q9Y271 337 aa4.07□□□□□ -1.76
PCDH9-201ENST00000377861 C9orf172C9J069 976 aa4.07□□□□□ -1.76
PCDH9-201ENST00000377861 NPIPB5A8MRT5 1133 aa4.07□□□□□ -1.76
PCDH9-201ENST00000377861 PTGER1P34995 402 aa4.07□□□□□ -1.76
PCDH9-201ENST00000377861 MDS2Q8NDY4 140 aa4.07□□□□□ -1.76
PCDH9-201ENST00000377861 TMEM133Q9H2Q1 129 aa4.07□□□□□ -1.76
PCDH9-201ENST00000377861 FCER1GP30273 86 aa4.07□□□□□ -1.76
PCDH9-201ENST00000377861 MOB3BQ86TA1 216 aa4.07□□□□□ -1.76
PCDH9-201ENST00000377861 NEU1Q99519 415 aa4.07□□□□□ -1.76
PCDH9-201ENST00000377861 CROCCQ5TZA2 2017 aa4.07□□□□□ -1.76
PCDH9-201ENST00000377861 FAM181BA6NEQ2 426 aa4.07□□□□□ -1.76
PCDH9-201ENST00000377861 RNASE6Q93091 150 aaKnown RBP4.07□□□□□ -1.76
PCDH9-201ENST00000377861 SERF1AO75920 110 aa4.07□□□□□ -1.76
PCDH9-201ENST00000377861 IFITM1P13164 125 aa4.07□□□□□ -1.76
PCDH9-201ENST00000377861 ZNF664Q8N3J9 261 aa4.07□□□□□ -1.76
PCDH9-201ENST00000377861 NPIPB3Q92617 1050 aa4.07□□□□□ -1.76
PCDH9-201ENST00000377861 IFI27L1Q96BM0 104 aa4.07□□□□□ -1.76
PCDH9-201ENST00000377861 RPP25Q9BUL9 199 aaKnown RBP4.07□□□□□ -1.76
PCDH9-201ENST00000377861 PHLDA3Q9Y5J5 127 aa4.07□□□□□ -1.76
PCDH9-201ENST00000377861 LMX1BO60663 402 aa4.07□□□□□ -1.76
PCDH9-201ENST00000377861 TCRAP04437 139 aa4.07□□□□□ -1.76
PCDH9-201ENST00000377861 ATOH7Q8N100 152 aa4.07□□□□□ -1.76
PCDH9-201ENST00000377861 MUC7Q8TAX7 377 aa4.07□□□□□ -1.76
PCDH9-201ENST00000377861 COL4A6Q14031 1691 aa4.07□□□□□ -1.76
PCDH9-201ENST00000377861 CITO14578 2027 aa4.07□□□□□ -1.76
PCDH9-201ENST00000377861 ST6GALNAC3Q8NDV1 305 aa4.07□□□□□ -1.76
PCDH9-201ENST00000377861 CD300EQ496F6 205 aaPredicted RBP4.07□□□□□ -1.76
PCDH9-201ENST00000377861 ATRAIDQ6UW56 229 aa4.07□□□□□ -1.76
PCDH9-201ENST00000377861 FER1L6-AS1Q8NA97 138 aa4.07□□□□□ -1.76
PCDH9-201ENST00000377861 C12orf49Q9H741 205 aa4.07□□□□□ -1.76
PCDH9-201ENST00000377861 LOC102724200A0A096LPH7 203 aaPredicted RBP4.07□□□□□ -1.76
PCDH9-201ENST00000377861 F11RQ9Y624 299 aaKnown RBP4.07□□□□□ -1.76
PCDH9-201ENST00000377861 H3BP45 60 aa4.07□□□□□ -1.76
PCDH9-201ENST00000377861 HOXA3O43365 443 aaPredicted RBP4.07□□□□□ -1.76
PCDH9-201ENST00000377861 SRIP30626 198 aa4.07□□□□□ -1.76
PCDH9-201ENST00000377861 FBXL15Q9H469 300 aa4.07□□□□□ -1.76
PCDH9-201ENST00000377861 VDAC2P45880 294 aaPredicted RBP4.07□□□□□ -1.76
PCDH9-201ENST00000377861 ZNF788Q6ZQV5 615 aa4.07□□□□□ -1.76
PCDH9-201ENST00000377861 MOGAT3Q86VF5 341 aa4.07□□□□□ -1.76
PCDH9-201ENST00000377861 SHISA8B8ZZ34 492 aa4.07□□□□□ -1.76
PCDH9-201ENST00000377861 MOB4Q9Y3A3 225 aa4.07□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms