RNA–Protein interactions for RNA: ENST00000357857.14

CLN3-204, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,720 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-204ENST00000357857 CYSRT1A8MQ03 144 aa14.76□□□□□ -0.05
CLN3-204ENST00000357857 ZNF705EA8MWA4 302 aaPredicted RBP14.76□□□□□ -0.05
CLN3-204ENST00000357857 OPRK1P41145 380 aa14.76□□□□□ -0.05
CLN3-204ENST00000357857 AKR1C1Q04828 323 aa14.76□□□□□ -0.05
CLN3-204ENST00000357857 ASPHD1Q5U4P2 390 aa14.76□□□□□ -0.05
CLN3-204ENST00000357857 SLC16A13Q7RTY0 426 aa14.76□□□□□ -0.05
CLN3-204ENST00000357857 MISP3Q96FF7 219 aa14.76□□□□□ -0.05
CLN3-204ENST00000357857 NPCDR1Q9BY65 106 aa14.76□□□□□ -0.05
CLN3-204ENST00000357857 WNT10AQ9GZT5 417 aa14.76□□□□□ -0.05
CLN3-204ENST00000357857 PARP11Q9NR21 331 aa14.76□□□□□ -0.05
CLN3-204ENST00000357857 SH2D7A6NKC9 451 aaPredicted RBP14.75□□□□□ -0.05
CLN3-204ENST00000357857 NPIPB5A8MRT5 1133 aa14.75□□□□□ -0.05
CLN3-204ENST00000357857 M0QZK8 103 aa14.75□□□□□ -0.05
CLN3-204ENST00000357857 CORTO00230 105 aa14.75□□□□□ -0.05
CLN3-204ENST00000357857 MPDU1O75352 247 aa14.75□□□□□ -0.05
CLN3-204ENST00000357857 IGHV4-59P01825 116 aa14.75□□□□□ -0.05
CLN3-204ENST00000357857 AMY1AP04745 511 aa14.75□□□□□ -0.05
CLN3-204ENST00000357857 EGR2P11161 476 aaPredicted RBP14.75□□□□□ -0.05
CLN3-204ENST00000357857 IER3P46695 156 aa14.75□□□□□ -0.05
CLN3-204ENST00000357857 RAB5CP51148 216 aa14.75□□□□□ -0.05
CLN3-204ENST00000357857 MLANAQ16655 118 aa14.75□□□□□ -0.05
CLN3-204ENST00000357857 SPNS3Q6ZMD2 512 aa14.75□□□□□ -0.05
CLN3-204ENST00000357857 CENPVQ7Z7K6 275 aaPredicted RBP14.75□□□□□ -0.05
CLN3-204ENST00000357857 SLC7A5P1Q8MH63 180 aa14.75□□□□□ -0.05
CLN3-204ENST00000357857 ZNF709Q8N972 641 aa14.75□□□□□ -0.05
CLN3-204ENST00000357857 SLC35E1Q96K37 410 aa14.75□□□□□ -0.05
CLN3-204ENST00000357857 ZNF469Q96JG9 3925 aaPredicted RBP14.75□□□□□ -0.05
CLN3-204ENST00000357857 UMAD1C9J7I0 102 aa14.75□□□□□ -0.05
CLN3-204ENST00000357857 CRYGCP07315 174 aa14.75□□□□□ -0.05
CLN3-204ENST00000357857 DEFA4P12838 97 aa14.75□□□□□ -0.05
CLN3-204ENST00000357857 GAMTQ14353 236 aa14.75□□□□□ -0.05
CLN3-204ENST00000357857 LFNGQ8NES3 379 aa14.75□□□□□ -0.05
CLN3-204ENST00000357857 OR1L6Q8NGR2 347 aa14.75□□□□□ -0.05
CLN3-204ENST00000357857 OR5R1Q8NH85 324 aa14.75□□□□□ -0.05
CLN3-204ENST00000357857 SGMS2Q8NHU3 365 aa14.75□□□□□ -0.05
CLN3-204ENST00000357857 SAT2Q96F10 170 aaPredicted RBP14.75□□□□□ -0.05
CLN3-204ENST00000357857 CXorf58Q96LI9 332 aa14.75□□□□□ -0.05
CLN3-204ENST00000357857 ZNF48Q96MX3 618 aaPredicted RBP14.75□□□□□ -0.05
CLN3-204ENST00000357857 FNDC4Q9H6D8 234 aaPredicted RBP14.75□□□□□ -0.05
CLN3-204ENST00000357857 AKAP9Q99996 3911 aa14.74□□□□□ -0.05
CLN3-204ENST00000357857 LINC00862A6NCI5 91 aa14.74□□□□□ -0.05
CLN3-204ENST00000357857 C17orf112F2Z3M2 114 aa14.74□□□□□ -0.05
CLN3-204ENST00000357857 ATP6V0E1O15342 81 aa14.74□□□□□ -0.05
CLN3-204ENST00000357857 PRH1P02810 166 aa14.74□□□□□ -0.05
CLN3-204ENST00000357857 SERF2P84101 59 aa14.74□□□□□ -0.05
CLN3-204ENST00000357857 AKR1C8PQ5T2L2 129 aa14.74□□□□□ -0.05
CLN3-204ENST00000357857 ETFRF1Q6IPR1 90 aa14.74□□□□□ -0.05
CLN3-204ENST00000357857 TEPPQ6URK8 271 aa14.74□□□□□ -0.05
CLN3-204ENST00000357857 Q6YL49 198 aa14.74□□□□□ -0.05
CLN3-204ENST00000357857 IL17RELQ6ZVW7 336 aa14.74□□□□□ -0.05
CLN3-204ENST00000357857 TMEM144Q7Z5S9 345 aa14.74□□□□□ -0.05
CLN3-204ENST00000357857 TTC9CQ8N5M4 171 aa14.74□□□□□ -0.05
CLN3-204ENST00000357857 YAE1D1Q9NRH1 226 aa14.74□□□□□ -0.05
CLN3-204ENST00000357857 LSM4Q9Y4Z0 139 aaKnown RBP14.74□□□□□ -0.05
CLN3-204ENST00000357857 DMRT1Q9Y5R6 373 aa14.74□□□□□ -0.05
CLN3-204ENST00000357857 MYO9AB2RTY4 2548 aa14.73□□□□□ -0.05
CLN3-204ENST00000357857 BTBD17A6NE02 478 aa14.73□□□□□ -0.05
CLN3-204ENST00000357857 TRIM77I1YAP6 450 aa14.73□□□□□ -0.05
CLN3-204ENST00000357857 MGST2Q99735 147 aa14.73□□□□□ -0.05
CLN3-204ENST00000357857 CAMLGP49069 296 aa14.72□□□□□ -0.05
CLN3-204ENST00000357857 BLOC1S1P78537 153 aa14.72□□□□□ -0.05
CLN3-204ENST00000357857 OR2T6Q8NHC8 308 aa14.72□□□□□ -0.05
CLN3-204ENST00000357857 PRDM13Q9H4Q3 707 aa14.72□□□□□ -0.05
CLN3-204ENST00000357857 TSPAN9O75954 239 aa14.72□□□□□ -0.05
CLN3-204ENST00000357857 SRP14P37108 136 aaKnown RBP14.72□□□□□ -0.05
CLN3-204ENST00000357857 RAB31Q13636 194 aa14.72□□□□□ -0.05
CLN3-204ENST00000357857 ECSCRQ19T08 205 aa14.72□□□□□ -0.05
CLN3-204ENST00000357857 C9orf152Q5JTZ5 239 aa14.72□□□□□ -0.05
CLN3-204ENST00000357857 UNQ5815/PRO19632Q6UWF5 114 aa14.72□□□□□ -0.05
CLN3-204ENST00000357857 Q6ZRG5 221 aa14.72□□□□□ -0.05
CLN3-204ENST00000357857 ACY3Q96HD9 319 aa14.72□□□□□ -0.05
CLN3-204ENST00000357857 NOTCH2Q04721 2471 aa14.71□□□□□ -0.05
CLN3-204ENST00000357857 LINC01548A6NM66 108 aa14.71□□□□□ -0.05
CLN3-204ENST00000357857 CYB5BO43169 146 aa14.71□□□□□ -0.05
CLN3-204ENST00000357857 MT-CO2P00403 227 aa14.71□□□□□ -0.05
CLN3-204ENST00000357857 FHITP49789 147 aa14.71□□□□□ -0.05
CLN3-204ENST00000357857 ELLP55199 621 aaPredicted RBP14.71□□□□□ -0.05
CLN3-204ENST00000357857 OR5T1Q8NG75 326 aa14.71□□□□□ -0.05
CLN3-204ENST00000357857 FAM213BQ8TBF2 198 aa14.71□□□□□ -0.05
CLN3-204ENST00000357857 TMEM68Q96MH6 324 aa14.71□□□□□ -0.05
CLN3-204ENST00000357857 TMUB1Q9BVT8 246 aa14.71□□□□□ -0.05
CLN3-204ENST00000357857 GGTLC1Q9BX51 225 aa14.71□□□□□ -0.05
CLN3-204ENST00000357857 TLN2Q9Y4G6 2542 aa14.71□□□□□ -0.06
CLN3-204ENST00000357857 AGPAT2O15120 278 aa14.7□□□□□ -0.06
CLN3-204ENST00000357857 IGHV3-48P01763 117 aa14.7□□□□□ -0.06
CLN3-204ENST00000357857 FFAR4Q5NUL3 377 aa14.7□□□□□ -0.06
CLN3-204ENST00000357857 PXDC1Q5TGL8 231 aa14.7□□□□□ -0.06
CLN3-204ENST00000357857 ACSM6Q6P461 480 aa14.7□□□□□ -0.06
CLN3-204ENST00000357857 DPPA3Q6W0C5 159 aa14.7□□□□□ -0.06
CLN3-204ENST00000357857 FAM110DQ8TAY7 271 aaPredicted RBP14.7□□□□□ -0.06
CLN3-204ENST00000357857 KCNIP2Q9NS61 270 aa14.7□□□□□ -0.06
CLN3-204ENST00000357857 PFDN2Q9UHV9 154 aa14.7□□□□□ -0.06
CLN3-204ENST00000357857 VPREB3Q9UKI3 123 aa14.7□□□□□ -0.06
CLN3-204ENST00000357857 I3L2K1 104 aa14.69□□□□□ -0.06
CLN3-204ENST00000357857 AKIRIN2Q53H80 203 aa14.69□□□□□ -0.06
CLN3-204ENST00000357857 TMEM41BQ5BJD5 291 aa14.69□□□□□ -0.06
CLN3-204ENST00000357857 NPIPB3Q92617 1050 aa14.69□□□□□ -0.06
CLN3-204ENST00000357857 VSIRQ9H7M9 311 aa14.69□□□□□ -0.06
CLN3-204ENST00000357857 TNFRSF19Q9NS68 423 aa14.69□□□□□ -0.06
CLN3-204ENST00000357857 MED9Q9NWA0 146 aa14.69□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms