RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 CKS2P33552 79 aa12.32□□□□□ -0.44
COL17A1-201ENST00000353479 MIR17HGQ75NE6 70 aa12.32□□□□□ -0.44
COL17A1-201ENST00000353479 TMEM219Q86XT9 240 aa12.32□□□□□ -0.44
COL17A1-201ENST00000353479 WNT2P09544 360 aa12.32□□□□□ -0.44
COL17A1-201ENST00000353479 CD99P14209 185 aa12.32□□□□□ -0.44
COL17A1-201ENST00000353479 MPZP25189 248 aa12.32□□□□□ -0.44
COL17A1-201ENST00000353479 CCKARP32238 428 aa12.32□□□□□ -0.44
COL17A1-201ENST00000353479 RHOGP84095 191 aa12.32□□□□□ -0.44
COL17A1-201ENST00000353479 CENPWQ5EE01 88 aa12.32□□□□□ -0.44
COL17A1-201ENST00000353479 Q6P435 159 aa12.32□□□□□ -0.44
COL17A1-201ENST00000353479 BRD3OSQ6XYD6 125 aa12.32□□□□□ -0.44
COL17A1-201ENST00000353479 NAPSAO96009 420 aa12.31□□□□□ -0.44
COL17A1-201ENST00000353479 FAM166AQ6J272 317 aa12.31□□□□□ -0.44
COL17A1-201ENST00000353479 C11orf44Q8N8P7 122 aa12.31□□□□□ -0.44
COL17A1-201ENST00000353479 HLA-DRB1P01911 266 aa12.31□□□□□ -0.44
COL17A1-201ENST00000353479 RPS20P60866 119 aaKnown RBP12.31□□□□□ -0.44
COL17A1-201ENST00000353479 JMJD8Q96S16 334 aa12.31□□□□□ -0.44
COL17A1-201ENST00000353479 RNF126Q9BV68 326 aa12.31□□□□□ -0.44
COL17A1-201ENST00000353479 BPESC1Q9GZL8 116 aa12.31□□□□□ -0.44
COL17A1-201ENST00000353479 TDGF1P13385 188 aa12.31□□□□□ -0.44
COL17A1-201ENST00000353479 GPX4P36969 197 aaPredicted RBP12.31□□□□□ -0.44
COL17A1-201ENST00000353479 PACRGQ96M98 296 aaPredicted RBP12.31□□□□□ -0.44
COL17A1-201ENST00000353479 WT1P19544 449 aaPredicted RBP12.31□□□□□ -0.44
COL17A1-201ENST00000353479 PRCDQ00LT1 54 aa12.31□□□□□ -0.44
COL17A1-201ENST00000353479 LY6G6FQ5SQ64 297 aa12.31□□□□□ -0.44
COL17A1-201ENST00000353479 TMEM144Q7Z5S9 345 aa12.31□□□□□ -0.44
COL17A1-201ENST00000353479 ITLN2Q8WWU7 325 aaPredicted RBP12.31□□□□□ -0.44
COL17A1-201ENST00000353479 MUC6Q6W4X9 2439 aa12.31□□□□□ -0.44
COL17A1-201ENST00000353479 OR10W1Q8NGF6 305 aa12.3□□□□□ -0.44
COL17A1-201ENST00000353479 PRO1933Q9H354 126 aa12.3□□□□□ -0.44
COL17A1-201ENST00000353479 COQ2Q96H96 371 aa12.3□□□□□ -0.44
COL17A1-201ENST00000353479 GSX1Q9H4S2 264 aaPredicted RBP12.3□□□□□ -0.44
COL17A1-201ENST00000353479 SMUG1Q53HV7 270 aa12.3□□□□□ -0.44
COL17A1-201ENST00000353479 FAM159AQ6UWV7 190 aa12.3□□□□□ -0.44
COL17A1-201ENST00000353479 AGAP20933 346 aa12.3□□□□□ -0.44
COL17A1-201ENST00000353479 C10orf55Q5SWW7 151 aa12.3□□□□□ -0.44
COL17A1-201ENST00000353479 HSPB8Q9UJY1 196 aa12.3□□□□□ -0.44
COL17A1-201ENST00000353479 IGHV1-3A0A0C4DH29 117 aa12.3□□□□□ -0.44
COL17A1-201ENST00000353479 CEACAM8P31997 349 aaPredicted RBP12.3□□□□□ -0.44
COL17A1-201ENST00000353479 TPTE2P1Q5T6R2 138 aa12.3□□□□□ -0.44
COL17A1-201ENST00000353479 HIST1H2BAQ96A08 127 aa12.29□□□□□ -0.44
COL17A1-201ENST00000353479 NEU1Q99519 415 aa12.29□□□□□ -0.44
COL17A1-201ENST00000353479 SAPCD1Q5SSQ6 148 aa12.29□□□□□ -0.44
COL17A1-201ENST00000353479 FAM74A4Q5TZK3 123 aa12.29□□□□□ -0.44
COL17A1-201ENST00000353479 FAM53AQ6NSI3 398 aaPredicted RBP12.29□□□□□ -0.44
COL17A1-201ENST00000353479 TUBA4BQ9H853 241 aa12.29□□□□□ -0.44
COL17A1-201ENST00000353479 PCNX2A6NKB5 2137 aa12.29□□□□□ -0.44
COL17A1-201ENST00000353479 GCGP01275 180 aa12.29□□□□□ -0.44
COL17A1-201ENST00000353479 QRFPP83859 136 aa12.29□□□□□ -0.44
COL17A1-201ENST00000353479 MT-ND6P03923 174 aa12.29□□□□□ -0.44
COL17A1-201ENST00000353479 BTF3P20290 206 aaKnown RBP12.29□□□□□ -0.44
COL17A1-201ENST00000353479 HERVK_113P61574 105 aa12.29□□□□□ -0.44
COL17A1-201ENST00000353479 LHFPL1Q86WI0 220 aa12.29□□□□□ -0.44
COL17A1-201ENST00000353479 BET1LQ9NYM9 111 aa12.29□□□□□ -0.44
COL17A1-201ENST00000353479 SNCGO76070 127 aa12.28□□□□□ -0.44
COL17A1-201ENST00000353479 ZNF506Q5JVG8 444 aa12.28□□□□□ -0.44
COL17A1-201ENST00000353479 TGIF2-C20orf24A0A0A6YYL0 155 aa12.28□□□□□ -0.44
COL17A1-201ENST00000353479 ID3Q02535 119 aa12.28□□□□□ -0.44
COL17A1-201ENST00000353479 TRGC2P03986 189 aa12.28□□□□□ -0.44
COL17A1-201ENST00000353479 VAMP3Q15836 100 aa12.28□□□□□ -0.44
COL17A1-201ENST00000353479 MOB4Q9Y3A3 225 aa12.28□□□□□ -0.44
COL17A1-201ENST00000353479 FAM181BA6NEQ2 426 aa12.28□□□□□ -0.44
COL17A1-201ENST00000353479 SFRP2Q96HF1 295 aa12.28□□□□□ -0.44
COL17A1-201ENST00000353479 PEMTQ9UBM1 199 aa12.28□□□□□ -0.44
COL17A1-201ENST00000353479 FAM215AQ9Y5M1 114 aa12.28□□□□□ -0.44
COL17A1-201ENST00000353479 C2orf16Q68DN1 1984 aa12.28□□□□□ -0.44
COL17A1-201ENST00000353479 LEMD1Q68G75 181 aa12.28□□□□□ -0.44
COL17A1-201ENST00000353479 H0YIZ8 118 aa12.27□□□□□ -0.44
COL17A1-201ENST00000353479 NUTF2P61970 127 aaKnown RBP12.27□□□□□ -0.44
COL17A1-201ENST00000353479 SCGB1C2P0DMR2 95 aa12.27□□□□□ -0.45
COL17A1-201ENST00000353479 CYB5R2Q6BCY4 276 aa12.27□□□□□ -0.45
COL17A1-201ENST00000353479 HEATR5AQ86XA9 2040 aa12.27□□□□□ -0.45
COL17A1-201ENST00000353479 HLA-DQA1P01909 254 aa12.27□□□□□ -0.45
COL17A1-201ENST00000353479 ATP5G3P48201 142 aa12.27□□□□□ -0.45
COL17A1-201ENST00000353479 RELBQ01201 579 aa12.27□□□□□ -0.45
COL17A1-201ENST00000353479 SCGB1D4Q6XE38 83 aa12.27□□□□□ -0.45
COL17A1-201ENST00000353479 SLC25A48Q6ZT89 311 aaKnown RBP12.27□□□□□ -0.45
COL17A1-201ENST00000353479 OR4D5Q8NGN0 318 aa12.27□□□□□ -0.45
COL17A1-201ENST00000353479 LTBP2Q14767 1821 aa12.27□□□□□ -0.45
COL17A1-201ENST00000353479 SCO2A0A1W2PP80 73 aa12.27□□□□□ -0.45
COL17A1-201ENST00000353479 ZNF503-AS2A6NEH8 195 aa12.27□□□□□ -0.45
COL17A1-201ENST00000353479 TMEM250H0YL14 139 aa12.27□□□□□ -0.45
COL17A1-201ENST00000353479 C2orf83Q53S99 150 aa12.27□□□□□ -0.45
COL17A1-201ENST00000353479 HS3ST6Q96QI5 342 aa12.27□□□□□ -0.45
COL17A1-201ENST00000353479 USF3Q68DE3 2245 aa12.27□□□□□ -0.45
COL17A1-201ENST00000353479 FAM90A9PA6NNJ1 464 aa12.26□□□□□ -0.45
COL17A1-201ENST00000353479 H3BUX3 64 aa12.26□□□□□ -0.45
COL17A1-201ENST00000353479 K7EM74 188 aa12.26□□□□□ -0.45
COL17A1-201ENST00000353479 M0R1W7 72 aa12.26□□□□□ -0.45
COL17A1-201ENST00000353479 PEX7O00628 323 aa12.26□□□□□ -0.45
COL17A1-201ENST00000353479 RNF125Q96EQ8 232 aa12.26□□□□□ -0.45
COL17A1-201ENST00000353479 MRPL18Q9H0U6 180 aaKnown RBP12.26□□□□□ -0.45
COL17A1-201ENST00000353479 TRAV41A0A0B4J266 112 aa12.26□□□□□ -0.45
COL17A1-201ENST00000353479 NTF4P34130 210 aa12.26□□□□□ -0.45
COL17A1-201ENST00000353479 MINOS1Q5TGZ0 78 aa12.26□□□□□ -0.45
COL17A1-201ENST00000353479 MINOS1-NBL1R4GNA1 71 aa12.26□□□□□ -0.45
COL17A1-201ENST00000353479 C9JCJ5 164 aa12.26□□□□□ -0.45
COL17A1-201ENST00000353479 UBE2L6O14933 153 aa12.26□□□□□ -0.45
COL17A1-201ENST00000353479 TCRBV4S1A1TA0A5B7 111 aa12.26□□□□□ -0.45
COL17A1-201ENST00000353479 NPFFO15130 113 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms