RNA–Protein interactions for RNA: ENST00000296581.10

LSM6-201, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM6, Length 2,259 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-201ENST00000296581 TEX45Q8NA69 505 aa12.5□□□□□ -0.41
LSM6-201ENST00000296581 RNASEH2CQ8TDP1 164 aaKnown RBP12.5□□□□□ -0.41
LSM6-201ENST00000296581 RNF5Q99942 180 aa12.5□□□□□ -0.41
LSM6-201ENST00000296581 ENY2Q9NPA8 101 aa12.5□□□□□ -0.41
LSM6-201ENST00000296581 CHD6Q8TD26 2715 aa12.5□□□□□ -0.41
LSM6-201ENST00000296581 MED13LQ71F56 2210 aa12.5□□□□□ -0.41
LSM6-201ENST00000296581 TOX4O94842 621 aa12.5□□□□□ -0.41
LSM6-201ENST00000296581 TSPAN15O95858 294 aa12.5□□□□□ -0.41
LSM6-201ENST00000296581 TRGC2P03986 189 aa12.5□□□□□ -0.41
LSM6-201ENST00000296581 CRYGBP07316 175 aa12.5□□□□□ -0.41
LSM6-201ENST00000296581 RUNX1Q01196 453 aa12.5□□□□□ -0.41
LSM6-201ENST00000296581 ELOBQ15370 118 aa12.5□□□□□ -0.41
LSM6-201ENST00000296581 MRGPRG-AS1Q2M3A8 158 aa12.5□□□□□ -0.41
LSM6-201ENST00000296581 VWC2Q2TAL6 325 aa12.5□□□□□ -0.41
LSM6-201ENST00000296581 MINOS1Q5TGZ0 78 aa12.5□□□□□ -0.41
LSM6-201ENST00000296581 LHFPL4Q7Z7J7 247 aa12.5□□□□□ -0.41
LSM6-201ENST00000296581 OR2G3Q8NGZ4 309 aa12.5□□□□□ -0.41
LSM6-201ENST00000296581 TMEM170AQ8WVE7 144 aa12.5□□□□□ -0.41
LSM6-201ENST00000296581 CFHR4Q92496 578 aa12.5□□□□□ -0.41
LSM6-201ENST00000296581 TMEM147Q9BVK8 224 aa12.5□□□□□ -0.41
LSM6-201ENST00000296581 PLEKHA3Q9HB20 300 aa12.5□□□□□ -0.41
LSM6-201ENST00000296581 MINOS1-NBL1R4GNA1 71 aa12.5□□□□□ -0.41
LSM6-201ENST00000296581 SPG11Q96JI7 2443 aa12.5□□□□□ -0.41
LSM6-201ENST00000296581 UTP20O75691 2785 aaKnown RBP12.5□□□□□ -0.41
LSM6-201ENST00000296581 OOSP1A8MZH6 123 aa12.49□□□□□ -0.41
LSM6-201ENST00000296581 SLC25A17O43808 307 aa12.49□□□□□ -0.41
LSM6-201ENST00000296581 TRGC1P0CF51 173 aa12.49□□□□□ -0.41
LSM6-201ENST00000296581 CD1BP29016 333 aa12.49□□□□□ -0.41
LSM6-201ENST00000296581 ARSJQ5FYB0 599 aaPredicted RBP12.49□□□□□ -0.41
LSM6-201ENST00000296581 ZNF787Q6DD87 383 aa12.49□□□□□ -0.41
LSM6-201ENST00000296581 COMMD1Q8N668 190 aa12.49□□□□□ -0.41
LSM6-201ENST00000296581 WDR61Q9GZS3 305 aaKnown RBP12.49□□□□□ -0.41
LSM6-201ENST00000296581 ZNF430Q9H8G1 570 aaPredicted RBP12.49□□□□□ -0.41
LSM6-201ENST00000296581 NDUFA4L2Q9NRX3 87 aa12.49□□□□□ -0.41
LSM6-201ENST00000296581 RFNGQ9Y644 331 aa12.49□□□□□ -0.41
LSM6-201ENST00000296581 WNK2Q9Y3S1 2297 aa12.49□□□□□ -0.41
LSM6-201ENST00000296581 ABCA2Q9BZC7 2435 aa12.49□□□□□ -0.41
LSM6-201ENST00000296581 PRSS46E5RG02 174 aa12.49□□□□□ -0.41
LSM6-201ENST00000296581 INS-IGF2F8WCM5 200 aa12.49□□□□□ -0.41
LSM6-201ENST00000296581 RRHO14718 337 aa12.49□□□□□ -0.41
LSM6-201ENST00000296581 TIMM23O14925 209 aa12.49□□□□□ -0.41
LSM6-201ENST00000296581 COL8A1P27658 744 aa12.49□□□□□ -0.41
LSM6-201ENST00000296581 SLC25A24Q6NUK1 477 aa12.49□□□□□ -0.41
LSM6-201ENST00000296581 ZNF343Q6P1L6 599 aa12.49□□□□□ -0.41
LSM6-201ENST00000296581 TMEM182Q6ZP80 229 aaPredicted RBP12.49□□□□□ -0.41
LSM6-201ENST00000296581 SLC24A4Q8NFF2 622 aa12.49□□□□□ -0.41
LSM6-201ENST00000296581 OR1L8Q8NGR8 309 aa12.49□□□□□ -0.41
LSM6-201ENST00000296581 SCGB1C1Q8TD33 95 aa12.49□□□□□ -0.41
LSM6-201ENST00000296581 C22orf15Q8WYQ4 148 aa12.49□□□□□ -0.41
LSM6-201ENST00000296581 COMMD5Q9GZQ3 224 aa12.49□□□□□ -0.41
LSM6-201ENST00000296581 EIF5A2Q9GZV4 153 aaKnown RBP12.49□□□□□ -0.41
LSM6-201ENST00000296581 VENTXO95231 258 aa12.48□□□□□ -0.41
LSM6-201ENST00000296581 PSG5Q15238 335 aa12.48□□□□□ -0.41
LSM6-201ENST00000296581 MAJINQ3KP22 176 aa12.48□□□□□ -0.41
LSM6-201ENST00000296581 ABHD5Q8WTS1 349 aa12.48□□□□□ -0.41
LSM6-201ENST00000296581 PSMG3Q9BT73 122 aaPredicted RBP12.48□□□□□ -0.41
LSM6-201ENST00000296581 HINT2Q9BX68 163 aa12.48□□□□□ -0.41
LSM6-201ENST00000296581 HILPDAQ9Y5L2 63 aa12.48□□□□□ -0.41
LSM6-201ENST00000296581 TMEM238LA0A1B0GVL6 79 aa12.48□□□□□ -0.41
LSM6-201ENST00000296581 ZNF727A8MUV8 499 aa12.48□□□□□ -0.41
LSM6-201ENST00000296581 J3QKU1 62 aa12.48□□□□□ -0.41
LSM6-201ENST00000296581 OPN1MWP04001 364 aa12.48□□□□□ -0.41
LSM6-201ENST00000296581 OPN1MW2P0DN77 364 aa12.48□□□□□ -0.41
LSM6-201ENST00000296581 OPN1MW3P0DN78 364 aa12.48□□□□□ -0.41
LSM6-201ENST00000296581 NPY1RP25929 384 aa12.48□□□□□ -0.41
LSM6-201ENST00000296581 UBE2E1P51965 193 aa12.48□□□□□ -0.41
LSM6-201ENST00000296581 RAB11AP62491 216 aa12.48□□□□□ -0.41
LSM6-201ENST00000296581 PAX8Q06710 450 aa12.48□□□□□ -0.41
LSM6-201ENST00000296581 FRZBQ92765 325 aa12.48□□□□□ -0.41
LSM6-201ENST00000296581 SLC35B3Q9H1N7 401 aa12.48□□□□□ -0.41
LSM6-201ENST00000296581 TPSG1Q9NRR2 321 aa12.48□□□□□ -0.41
LSM6-201ENST00000296581 TBL2Q9Y4P3 447 aaKnown RBP12.48□□□□□ -0.41
LSM6-201ENST00000296581 TGIF2-C20orf24A0A0A6YYL0 155 aa12.47□□□□□ -0.41
LSM6-201ENST00000296581 UBE2L5PA0A1B0GUS4 154 aa12.47□□□□□ -0.41
LSM6-201ENST00000296581 A0A1W2PRD5 423 aa12.47□□□□□ -0.41
LSM6-201ENST00000296581 A0A1W2PRF3 423 aa12.47□□□□□ -0.41
LSM6-201ENST00000296581 A0A1W2PRM7 423 aa12.47□□□□□ -0.41
LSM6-201ENST00000296581 ZNF705GA8MUZ8 300 aaPredicted RBP12.47□□□□□ -0.41
LSM6-201ENST00000296581 MDKP21741 143 aaPredicted RBP12.47□□□□□ -0.41
LSM6-201ENST00000296581 CNTFRP26992 372 aa12.47□□□□□ -0.41
LSM6-201ENST00000296581 ATP5IP56385 69 aaPredicted RBP12.47□□□□□ -0.41
LSM6-201ENST00000296581 BSXQ3C1V8 233 aa12.47□□□□□ -0.41
LSM6-201ENST00000296581 ETFRF1Q6IPR1 90 aa12.47□□□□□ -0.41
LSM6-201ENST00000296581 TAF15Q92804 592 aaKnown RBP eCLIP12.47□□□□□ -0.41
LSM6-201ENST00000296581 PUS1Q9Y606 427 aaKnown RBP eCLIP12.47□□□□□ -0.41
LSM6-201ENST00000296581 CGB1A6NKQ9 187 aa12.46□□□□□ -0.41
LSM6-201ENST00000296581 M0QZK8 103 aa12.46□□□□□ -0.41
LSM6-201ENST00000296581 CYB5BO43169 146 aa12.46□□□□□ -0.41
LSM6-201ENST00000296581 GGCTO75223 188 aaKnown RBP12.46□□□□□ -0.41
LSM6-201ENST00000296581 CA2P00918 260 aa12.46□□□□□ -0.41
LSM6-201ENST00000296581 PRSS8Q16651 343 aa12.46□□□□□ -0.41
LSM6-201ENST00000296581 CCDC144NLQ6NUI1 221 aa12.46□□□□□ -0.41
LSM6-201ENST00000296581 MMD2Q8IY49 270 aa12.46□□□□□ -0.41
LSM6-201ENST00000296581 RSG1Q9BU20 258 aa12.46□□□□□ -0.41
LSM6-201ENST00000296581 LPAR2Q9HBW0 351 aa12.46□□□□□ -0.41
LSM6-201ENST00000296581 SIGLEC9Q9Y336 463 aa12.46□□□□□ -0.41
LSM6-201ENST00000296581 FBXO7Q9Y3I1 522 aa12.46□□□□□ -0.41
LSM6-201ENST00000296581 TIMM9Q9Y5J7 89 aa12.46□□□□□ -0.41
LSM6-201ENST00000296581 LGALS4P56470 323 aa12.46□□□□□ -0.42
LSM6-201ENST00000296581 CENPVQ7Z7K6 275 aaPredicted RBP12.46□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms