RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 MYO7AQ13402 2215 aa3.94□□□□□ -1.78
SCN1A-220ENST00000641603 KIAA1217Q5T5P2 1943 aa3.94□□□□□ -1.78
SCN1A-220ENST00000641603 TMEM256Q8N2U0 113 aa3.94□□□□□ -1.78
SCN1A-220ENST00000641603 SMIM20Q8N5G0 67 aa3.94□□□□□ -1.78
SCN1A-220ENST00000641603 OCC1Q8TAD7 63 aa3.94□□□□□ -1.78
SCN1A-220ENST00000641603 VOPP1Q96AW1 172 aa3.94□□□□□ -1.78
SCN1A-220ENST00000641603 ZNF831Q5JPB2 1677 aa3.94□□□□□ -1.78
SCN1A-220ENST00000641603 M0R2P5 195 aa3.94□□□□□ -1.78
SCN1A-220ENST00000641603 WNT9BO14905 357 aa3.94□□□□□ -1.78
SCN1A-220ENST00000641603 SPINT1O43278 529 aa3.94□□□□□ -1.78
SCN1A-220ENST00000641603 MPV17P39210 176 aa3.94□□□□□ -1.78
SCN1A-220ENST00000641603 DUSP2Q05923 314 aa3.94□□□□□ -1.78
SCN1A-220ENST00000641603 PCSK4Q6UW60 755 aa3.94□□□□□ -1.78
SCN1A-220ENST00000641603 Q6ZWC4 215 aa3.94□□□□□ -1.78
SCN1A-220ENST00000641603 GFI1Q99684 422 aa3.94□□□□□ -1.78
SCN1A-220ENST00000641603 HCFC2Q9Y5Z7 792 aa3.94□□□□□ -1.78
SCN1A-220ENST00000641603 J3KRW8 73 aa3.94□□□□□ -1.78
SCN1A-220ENST00000641603 LIFP15018 202 aa3.94□□□□□ -1.78
SCN1A-220ENST00000641603 SRD5A1P18405 259 aa3.94□□□□□ -1.78
SCN1A-220ENST00000641603 DLX6P56179 175 aa3.94□□□□□ -1.78
SCN1A-220ENST00000641603 STPG4Q8N801 248 aa3.94□□□□□ -1.78
SCN1A-220ENST00000641603 CLEC7AQ9BXN2 247 aa3.94□□□□□ -1.78
SCN1A-220ENST00000641603 TRPM6Q9BX84 2022 aa3.94□□□□□ -1.78
SCN1A-220ENST00000641603 COL11A1P12107 1806 aaPredicted RBP3.94□□□□□ -1.78
SCN1A-220ENST00000641603 LOC105378220A0A1B0GUY1 285 aaPredicted RBP3.94□□□□□ -1.78
SCN1A-220ENST00000641603 H3BMM0 161 aa3.94□□□□□ -1.78
SCN1A-220ENST00000641603 QRFPP83859 136 aa3.94□□□□□ -1.78
SCN1A-220ENST00000641603 SLC25A53Q5H9E4 307 aa3.94□□□□□ -1.78
SCN1A-220ENST00000641603 KIR3DL3Q8N743 410 aa3.94□□□□□ -1.78
SCN1A-220ENST00000641603 UBE2WQ96B02 151 aa3.94□□□□□ -1.78
SCN1A-220ENST00000641603 DNAJC30Q96LL9 226 aa3.94□□□□□ -1.78
SCN1A-220ENST00000641603 HILPDAQ9Y5L2 63 aa3.94□□□□□ -1.78
SCN1A-220ENST00000641603 CHD5Q8TDI0 1954 aa3.94□□□□□ -1.78
SCN1A-220ENST00000641603 TMEM258P61165 79 aa3.93□□□□□ -1.78
SCN1A-220ENST00000641603 C5orf47Q569G3 176 aa3.93□□□□□ -1.78
SCN1A-220ENST00000641603 GAGE2AQ6NT46 116 aa3.93□□□□□ -1.78
SCN1A-220ENST00000641603 ZNF775Q96BV0 537 aaPredicted RBP3.93□□□□□ -1.78
SCN1A-220ENST00000641603 WFDC6Q9BQY6 131 aa3.93□□□□□ -1.78
SCN1A-220ENST00000641603 HLA-DRB4P13762 266 aa3.93□□□□□ -1.78
SCN1A-220ENST00000641603 FOXA3P55318 350 aaPredicted RBP3.93□□□□□ -1.78
SCN1A-220ENST00000641603 MESP2Q0VG99 397 aa3.93□□□□□ -1.78
SCN1A-220ENST00000641603 YRDCQ86U90 279 aaKnown RBP3.93□□□□□ -1.78
SCN1A-220ENST00000641603 RPP25LQ8N5L8 163 aaKnown RBP3.93□□□□□ -1.78
SCN1A-220ENST00000641603 SLC50A1Q9BRV3 221 aa3.93□□□□□ -1.78
SCN1A-220ENST00000641603 TSSC4Q9Y5U2 329 aaPredicted RBP3.93□□□□□ -1.78
SCN1A-220ENST00000641603 HLA-DRB4X5D2U9 266 aa3.93□□□□□ -1.78
SCN1A-220ENST00000641603 DOCK1Q14185 1865 aa3.93□□□□□ -1.78
SCN1A-220ENST00000641603 CGAP01215 116 aa3.93□□□□□ -1.78
SCN1A-220ENST00000641603 ZNF688P0C7X2 276 aa3.93□□□□□ -1.78
SCN1A-220ENST00000641603 C6orf15Q6UXA7 325 aaPredicted RBP3.93□□□□□ -1.78
SCN1A-220ENST00000641603 ONECUT1Q9UBC0 465 aa3.93□□□□□ -1.78
SCN1A-220ENST00000641603 PATJQ8NI35 1801 aa3.93□□□□□ -1.78
SCN1A-220ENST00000641603 ESPL1Q14674 2120 aa3.93□□□□□ -1.78
SCN1A-220ENST00000641603 SH2D7A6NKC9 451 aaPredicted RBP3.93□□□□□ -1.78
SCN1A-220ENST00000641603 IL9P15248 144 aa3.93□□□□□ -1.78
SCN1A-220ENST00000641603 IL15RAQ13261 267 aa3.93□□□□□ -1.78
SCN1A-220ENST00000641603 SSPNQ14714 243 aa3.93□□□□□ -1.78
SCN1A-220ENST00000641603 PI4KAP42356 2102 aa3.93□□□□□ -1.78
SCN1A-220ENST00000641603 C2CD4DB7Z1M9 353 aa3.93□□□□□ -1.78
SCN1A-220ENST00000641603 TRACP01848 142 aa3.93□□□□□ -1.78
SCN1A-220ENST00000641603 CD40P25942 277 aa3.93□□□□□ -1.78
SCN1A-220ENST00000641603 LEPP41159 167 aa3.93□□□□□ -1.78
SCN1A-220ENST00000641603 FBXL7Q9UJT9 491 aa3.93□□□□□ -1.78
SCN1A-220ENST00000641603 SCN8AQ9UQD0 1980 aa3.93□□□□□ -1.78
SCN1A-220ENST00000641603 TTC3P53804 2025 aa3.93□□□□□ -1.78
SCN1A-220ENST00000641603 hCG_38984A0A1B0GV85 526 aa3.93□□□□□ -1.78
SCN1A-220ENST00000641603 HLA-DMBP28068 263 aa3.93□□□□□ -1.78
SCN1A-220ENST00000641603 SCARF2Q96GP6 870 aaPredicted RBP3.93□□□□□ -1.78
SCN1A-220ENST00000641603 PSME4Q14997 1843 aa3.93□□□□□ -1.78
SCN1A-220ENST00000641603 NAPSAO96009 420 aa3.93□□□□□ -1.78
SCN1A-220ENST00000641603 SCTP09683 121 aa3.93□□□□□ -1.78
SCN1A-220ENST00000641603 CISD3P0C7P0 127 aa3.93□□□□□ -1.78
SCN1A-220ENST00000641603 TNXAQ16473 311 aa3.93□□□□□ -1.78
SCN1A-220ENST00000641603 NUP35Q8NFH5 326 aa3.93□□□□□ -1.78
SCN1A-220ENST00000641603 COL18A1P39060 1754 aa3.93□□□□□ -1.78
SCN1A-220ENST00000641603 C15orf61A6NNL5 157 aa3.93□□□□□ -1.78
SCN1A-220ENST00000641603 TNFRSF6BO95407 300 aa3.93□□□□□ -1.78
SCN1A-220ENST00000641603 PAQR4Q8N4S7 273 aaPredicted RBP3.93□□□□□ -1.78
SCN1A-220ENST00000641603 TMEM160Q9NX00 188 aa3.93□□□□□ -1.78
SCN1A-220ENST00000641603 PHLDA3Q9Y5J5 127 aa3.93□□□□□ -1.78
SCN1A-220ENST00000641603 TRIP12Q14669 1992 aaPredicted RBP3.93□□□□□ -1.78
SCN1A-220ENST00000641603 ZAR1Q86SH2 424 aa3.93□□□□□ -1.78
SCN1A-220ENST00000641603 ITGB4P16144 1822 aa3.93□□□□□ -1.78
SCN1A-220ENST00000641603 IGLV3-32A0A0A0MS00 114 aa3.93□□□□□ -1.78
SCN1A-220ENST00000641603 LOC389332A0A1B0GUA5 103 aa3.93□□□□□ -1.78
SCN1A-220ENST00000641603 PDE6HQ13956 83 aa3.93□□□□□ -1.78
SCN1A-220ENST00000641603 LAGE3Q14657 143 aa3.93□□□□□ -1.78
SCN1A-220ENST00000641603 C6orf106Q9H6K1 298 aaPredicted RBP3.93□□□□□ -1.78
SCN1A-220ENST00000641603 HCFC1R1Q9NWW0 138 aa3.93□□□□□ -1.78
SCN1A-220ENST00000641603 LYPD3O95274 346 aa3.92□□□□□ -1.78
SCN1A-220ENST00000641603 NTN1O95631 604 aa3.92□□□□□ -1.78
SCN1A-220ENST00000641603 FAM222BQ8WU58 562 aa3.92□□□□□ -1.78
SCN1A-220ENST00000641603 TRAV8-1A0A0A6YYK1 113 aa3.92□□□□□ -1.78
SCN1A-220ENST00000641603 TCRBV4S1A1TA0A5B7 111 aa3.92□□□□□ -1.78
SCN1A-220ENST00000641603 SYNGR3O43761 229 aa3.92□□□□□ -1.78
SCN1A-220ENST00000641603 ABHD17AQ96GS6 310 aa3.92□□□□□ -1.78
SCN1A-220ENST00000641603 PIMREGQ9BSJ6 248 aa3.92□□□□□ -1.78
SCN1A-220ENST00000641603 FOXQ1Q9C009 403 aa3.92□□□□□ -1.78
SCN1A-220ENST00000641603 MTCL1Q9Y4B5 1905 aaKnown RBP3.92□□□□□ -1.78
SCN1A-220ENST00000641603 TNFAIP6P98066 277 aaPredicted RBP3.92□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms