RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 SPINK6Q6UWN8 80 aa-0.15□□□□□ -2.43
VPS35-212ENST00000640313 ALKAL1Q6UXT8 129 aa-0.15□□□□□ -2.43
VPS35-212ENST00000640313 SOSTDC1Q6X4U4 206 aa-0.15□□□□□ -2.43
VPS35-212ENST00000640313 DEFB128Q7Z7B8 93 aa-0.15□□□□□ -2.43
VPS35-212ENST00000640313 CD302Q8IX05 232 aa-0.15□□□□□ -2.43
VPS35-212ENST00000640313 TMEM251Q8N6I4 163 aa-0.15□□□□□ -2.43
VPS35-212ENST00000640313 NATD1Q8N6N6 113 aa-0.15□□□□□ -2.43
VPS35-212ENST00000640313 C3orf56Q8N813 242 aa-0.15□□□□□ -2.43
VPS35-212ENST00000640313 TMEM161BQ8NDZ6 487 aa-0.15□□□□□ -2.43
VPS35-212ENST00000640313 OR5AK3PQ8NH89 298 aa-0.15□□□□□ -2.43
VPS35-212ENST00000640313 JOSD2Q8TAC2 188 aa-0.15□□□□□ -2.43
VPS35-212ENST00000640313 CCDC12Q8WUD4 166 aaPredicted RBP-0.15□□□□□ -2.43
VPS35-212ENST00000640313 EEF1AKMT1Q8WVE0 214 aa-0.15□□□□□ -2.43
VPS35-212ENST00000640313 DNAJB3Q8WWF6 145 aa-0.15□□□□□ -2.43
VPS35-212ENST00000640313 RASSF5Q8WWW0 418 aa-0.15□□□□□ -2.43
VPS35-212ENST00000640313 C11orf40Q8WZ69 217 aa-0.15□□□□□ -2.43
VPS35-212ENST00000640313 CCDC124Q96CT7 223 aaKnown RBP-0.15□□□□□ -2.43
VPS35-212ENST00000640313 ANKRD36BP1Q96IX9 119 aa-0.15□□□□□ -2.43
VPS35-212ENST00000640313 CYTH2Q99418 400 aa-0.15□□□□□ -2.43
VPS35-212ENST00000640313 DERL2Q9GZP9 239 aa-0.15□□□□□ -2.43
VPS35-212ENST00000640313 METTL9Q9H1A3 318 aa-0.15□□□□□ -2.43
VPS35-212ENST00000640313 OR52A5Q9H2C5 316 aa-0.15□□□□□ -2.43
VPS35-212ENST00000640313 WDR54Q9H977 334 aa-0.15□□□□□ -2.43
VPS35-212ENST00000640313 EFCAB1Q9HAE3 211 aa-0.15□□□□□ -2.43
VPS35-212ENST00000640313 CXorf21Q9HAI6 301 aa-0.15□□□□□ -2.43
VPS35-212ENST00000640313 CDC42SE1Q9NRR8 79 aa-0.15□□□□□ -2.43
VPS35-212ENST00000640313 AGPAT3Q9NRZ7 376 aa-0.15□□□□□ -2.43
VPS35-212ENST00000640313 C1orf109Q9NX04 203 aa-0.15□□□□□ -2.43
VPS35-212ENST00000640313 PAQR5Q9NXK6 330 aaPredicted RBP-0.15□□□□□ -2.43
VPS35-212ENST00000640313 TP73-AS1Q9UF72 201 aa-0.15□□□□□ -2.43
VPS35-212ENST00000640313 AK3Q9UIJ7 227 aa-0.15□□□□□ -2.43
VPS35-212ENST00000640313 KLK9Q9UKQ9 250 aa-0.15□□□□□ -2.43
VPS35-212ENST00000640313 FUT9Q9Y231 359 aa-0.15□□□□□ -2.43
VPS35-212ENST00000640313 CHCHD2Q9Y6H1 151 aaPredicted RBP-0.15□□□□□ -2.43
VPS35-212ENST00000640313 CACNA1HO95180 2353 aa-0.15□□□□□ -2.43
VPS35-212ENST00000640313 F8P00451 2351 aa-0.15□□□□□ -2.43
VPS35-212ENST00000640313 STRCQ7RTU9 1775 aa-0.15□□□□□ -2.43
VPS35-212ENST00000640313 ALPK3Q96L96 1907 aa-0.15□□□□□ -2.43
VPS35-212ENST00000640313 DICER1Q9UPY3 1922 aaKnown RBP-0.15□□□□□ -2.43
VPS35-212ENST00000640313 DCHS2Q6V1P9 2916 aa-0.15□□□□□ -2.43
VPS35-212ENST00000640313 PKD1L1Q8TDX9 2849 aa-0.15□□□□□ -2.43
VPS35-212ENST00000640313 SIPA1L1O43166 1804 aa-0.15□□□□□ -2.43
VPS35-212ENST00000640313 RAD50Q92878 1312 aa-0.15□□□□□ -2.43
VPS35-212ENST00000640313 CACNA1CQ13936 2221 aa-0.15□□□□□ -2.43
VPS35-212ENST00000640313 UNC13CQ8NB66 2214 aa-0.15□□□□□ -2.43
VPS35-212ENST00000640313 DNAH6Q9C0G6 4158 aa-0.16□□□□□ -2.43
VPS35-212ENST00000640313 KCPQ6ZWJ8 1503 aa-0.16□□□□□ -2.43
VPS35-212ENST00000640313 PTPRSQ13332 1948 aa-0.16□□□□□ -2.43
VPS35-212ENST00000640313 TTC28Q96AY4 2481 aa-0.16□□□□□ -2.43
VPS35-212ENST00000640313 TRAV1-1A0A0B4J248 108 aa-0.16□□□□□ -2.44
VPS35-212ENST00000640313 LOC100506127A0A0U1RQW1 187 aa-0.16□□□□□ -2.44
VPS35-212ENST00000640313 GGT3PA6NGU5 568 aa-0.16□□□□□ -2.44
VPS35-212ENST00000640313 OR4C45A6NMZ5 311 aa-0.16□□□□□ -2.44
VPS35-212ENST00000640313 IQCF5A8MTL0 148 aa-0.16□□□□□ -2.44
VPS35-212ENST00000640313 FABP5P3A8MUU1 101 aa-0.16□□□□□ -2.44
VPS35-212ENST00000640313 ZNF736B4DX44 427 aaPredicted RBP-0.16□□□□□ -2.44
VPS35-212ENST00000640313 CLDN25C9JDP6 229 aa-0.16□□□□□ -2.44
VPS35-212ENST00000640313 FTCDNL1E5RQL4 147 aa-0.16□□□□□ -2.44
VPS35-212ENST00000640313 F8VZ95 297 aa-0.16□□□□□ -2.44
VPS35-212ENST00000640313 BUB1B-PAK6H3BSN5 160 aa-0.16□□□□□ -2.44
VPS35-212ENST00000640313 KCNK1O00180 336 aa-0.16□□□□□ -2.44
VPS35-212ENST00000640313 ACOX3O15254 700 aa-0.16□□□□□ -2.44
VPS35-212ENST00000640313 BIRC5O15392 142 aa-0.16□□□□□ -2.44
VPS35-212ENST00000640313 CCL16O15467 120 aa-0.16□□□□□ -2.44
VPS35-212ENST00000640313 NUPR1O60356 82 aa-0.16□□□□□ -2.44
VPS35-212ENST00000640313 HPGDSO60760 199 aa-0.16□□□□□ -2.44
VPS35-212ENST00000640313 NOS1APO75052 506 aaPredicted RBP-0.16□□□□□ -2.44
VPS35-212ENST00000640313 KLF7O75840 302 aaPredicted RBP-0.16□□□□□ -2.44
VPS35-212ENST00000640313 UBL3O95164 117 aa-0.16□□□□□ -2.44
VPS35-212ENST00000640313 OR5F1O95221 314 aa-0.16□□□□□ -2.44
VPS35-212ENST00000640313 TCL1BO95988 128 aa-0.16□□□□□ -2.44
VPS35-212ENST00000640313 HTR1AP08908 422 aa-0.16□□□□□ -2.44
VPS35-212ENST00000640313 SPI1P17947 270 aa-0.16□□□□□ -2.44
VPS35-212ENST00000640313 NFYAP23511 347 aaPredicted RBP-0.16□□□□□ -2.44
VPS35-212ENST00000640313 S100A7P31151 101 aa-0.16□□□□□ -2.44
VPS35-212ENST00000640313 BRS3P32247 399 aa-0.16□□□□□ -2.44
VPS35-212ENST00000640313 RAB13P51153 203 aa-0.16□□□□□ -2.44
VPS35-212ENST00000640313 HADHBP55084 474 aaKnown RBP-0.16□□□□□ -2.44
VPS35-212ENST00000640313 FOXA3P55318 350 aaPredicted RBP-0.16□□□□□ -2.44
VPS35-212ENST00000640313 OR4D2P58180 307 aa-0.16□□□□□ -2.44
VPS35-212ENST00000640313 RHOGP84095 191 aa-0.16□□□□□ -2.44
VPS35-212ENST00000640313 PMS2P3Q13401 168 aa-0.16□□□□□ -2.44
VPS35-212ENST00000640313 CDK10Q15131 360 aa-0.16□□□□□ -2.44
VPS35-212ENST00000640313 NDUFA5Q16718 116 aa-0.16□□□□□ -2.44
VPS35-212ENST00000640313 MPV17LQ2QL34 196 aa-0.16□□□□□ -2.44
VPS35-212ENST00000640313 Q3ZCU0 254 aa-0.16□□□□□ -2.44
VPS35-212ENST00000640313 ASB16-AS1Q495Z4 193 aa-0.16□□□□□ -2.44
VPS35-212ENST00000640313 DNAL1Q4LDG9 190 aa-0.16□□□□□ -2.44
VPS35-212ENST00000640313 FAM78BQ5VT40 261 aa-0.16□□□□□ -2.44
VPS35-212ENST00000640313 AADACL4Q5VUY2 407 aa-0.16□□□□□ -2.44
VPS35-212ENST00000640313 LPCAT4Q643R3 524 aa-0.16□□□□□ -2.44
VPS35-212ENST00000640313 CLEC6AQ6EIG7 209 aa-0.16□□□□□ -2.44
VPS35-212ENST00000640313 TNFAIP8L2Q6P589 184 aaPredicted RBP-0.16□□□□□ -2.44
VPS35-212ENST00000640313 ATOH7Q8N100 152 aa-0.16□□□□□ -2.44
VPS35-212ENST00000640313 TBC1D19Q8N5T2 526 aa-0.16□□□□□ -2.44
VPS35-212ENST00000640313 TMEM156Q8N614 296 aa-0.16□□□□□ -2.44
VPS35-212ENST00000640313 DEFB125Q8N687 156 aa-0.16□□□□□ -2.44
VPS35-212ENST00000640313 UBL4BQ8N7F7 174 aa-0.16□□□□□ -2.44
VPS35-212ENST00000640313 OR52R1Q8NGF1 315 aa-0.16□□□□□ -2.44
VPS35-212ENST00000640313 OR4D11Q8NGI4 311 aa-0.16□□□□□ -2.44
Retrieved 100 of 20,778 RNA–protein pairs in 295.2 ms