RNA–Protein interactions for RNA: ENST00000637871.1

CLN3-263, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,606 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-263ENST00000637871 CACNG8Q8WXS5 425 aa14.89□□□□□ -0.03
CLN3-263ENST00000637871 RAB24Q969Q5 203 aa14.89□□□□□ -0.03
CLN3-263ENST00000637871 MAP1AP78559 2803 aaPredicted RBP14.89□□□□□ -0.03
CLN3-263ENST00000637871 SRRM4A7MD48 611 aaKnown RBP14.88□□□□□ -0.03
CLN3-263ENST00000637871 CA2P00918 260 aa14.88□□□□□ -0.03
CLN3-263ENST00000637871 RPL29P47914 159 aaKnown RBP14.88□□□□□ -0.03
CLN3-263ENST00000637871 BSXQ3C1V8 233 aa14.88□□□□□ -0.03
CLN3-263ENST00000637871 Q8N7P7 452 aa14.88□□□□□ -0.03
CLN3-263ENST00000637871 NANPQ8TBE9 248 aa14.88□□□□□ -0.03
CLN3-263ENST00000637871 TSPAN9O75954 239 aa14.88□□□□□ -0.03
CLN3-263ENST00000637871 SUB1P53999 127 aaKnown RBP eCLIP14.88□□□□□ -0.03
CLN3-263ENST00000637871 RPS16P62249 146 aaKnown RBP14.88□□□□□ -0.03
CLN3-263ENST00000637871 MEF2BQ02080 365 aaPredicted RBP14.88□□□□□ -0.03
CLN3-263ENST00000637871 C11orf42Q8N5U0 333 aa14.88□□□□□ -0.03
CLN3-263ENST00000637871 TMEM170AQ8WVE7 144 aa14.88□□□□□ -0.03
CLN3-263ENST00000637871 RNF5Q99942 180 aa14.88□□□□□ -0.03
CLN3-263ENST00000637871 NDUFA4L2Q9NRX3 87 aa14.88□□□□□ -0.03
CLN3-263ENST00000637871 TMEM242Q9NWH2 141 aa14.88□□□□□ -0.03
CLN3-263ENST00000637871 IGHV4-39P01824 125 aa14.87□□□□□ -0.03
CLN3-263ENST00000637871 GPX4P36969 197 aaPredicted RBP14.87□□□□□ -0.03
CLN3-263ENST00000637871 FGF8P55075 233 aaPredicted RBP14.87□□□□□ -0.03
CLN3-263ENST00000637871 FAM90A2PQ658T7 463 aa14.87□□□□□ -0.03
CLN3-263ENST00000637871 SSX7Q7RTT5 188 aa14.87□□□□□ -0.03
CLN3-263ENST00000637871 TMEM144Q7Z5S9 345 aa14.87□□□□□ -0.03
CLN3-263ENST00000637871 TEX45Q8NA69 505 aa14.87□□□□□ -0.03
CLN3-263ENST00000637871 C19orf24Q9BVV8 132 aa14.87□□□□□ -0.03
CLN3-263ENST00000637871 GGTLC1Q9BX51 225 aa14.87□□□□□ -0.03
CLN3-263ENST00000637871 CLEC7AQ9BXN2 247 aa14.87□□□□□ -0.03
CLN3-263ENST00000637871 SLC25A22Q9H936 323 aa14.87□□□□□ -0.03
CLN3-263ENST00000637871 CCDC168Q8NDH2 2452 aa14.87□□□□□ -0.03
CLN3-263ENST00000637871 LYNX1G3V0Z9 82 aa14.86□□□□□ -0.03
CLN3-263ENST00000637871 LYNX1P0DP58 116 aa14.86□□□□□ -0.03
CLN3-263ENST00000637871 ERVFRD-1P60508 538 aa14.86□□□□□ -0.03
CLN3-263ENST00000637871 HNF4GQ14541 408 aa14.86□□□□□ -0.03
CLN3-263ENST00000637871 DEFB113Q30KQ7 82 aa14.86□□□□□ -0.03
CLN3-263ENST00000637871 AKIRIN2Q53H80 203 aa14.86□□□□□ -0.03
CLN3-263ENST00000637871 PXMP4Q9Y6I8 212 aa14.86□□□□□ -0.03
CLN3-263ENST00000637871 PPIAL4CA0A0B4J2A2 164 aa14.85□□□□□ -0.03
CLN3-263ENST00000637871 IGLV1-47P01700 117 aa14.85□□□□□ -0.03
CLN3-263ENST00000637871 LIPFP07098 398 aa14.85□□□□□ -0.03
CLN3-263ENST00000637871 PPIAL4GP0DN37 164 aa14.85□□□□□ -0.03
CLN3-263ENST00000637871 ATP5J2P56134 94 aa14.85□□□□□ -0.03
CLN3-263ENST00000637871 HLA-DRB5Q30154 266 aa14.85□□□□□ -0.03
CLN3-263ENST00000637871 WDR25Q64LD2 544 aaPredicted RBP14.85□□□□□ -0.03
CLN3-263ENST00000637871 LY6G5BQ8NDX9 201 aa14.85□□□□□ -0.03
CLN3-263ENST00000637871 MALSU1Q96EH3 234 aa14.85□□□□□ -0.03
CLN3-263ENST00000637871 MGST2Q99735 147 aa14.85□□□□□ -0.03
CLN3-263ENST00000637871 HINT2Q9BX68 163 aa14.85□□□□□ -0.03
CLN3-263ENST00000637871 IGHV2-26A0A0B4J1V2 119 aa14.84□□□□□ -0.03
CLN3-263ENST00000637871 MT-CO2P00403 227 aa14.84□□□□□ -0.03
CLN3-263ENST00000637871 RNASEH2CQ8TDP1 164 aaKnown RBP14.84□□□□□ -0.03
CLN3-263ENST00000637871 SLC35E1Q96K37 410 aa14.84□□□□□ -0.03
CLN3-263ENST00000637871 CTDSP1Q9GZU7 261 aa14.84□□□□□ -0.03
CLN3-263ENST00000637871 TEX15Q9BXT5 2789 aa14.84□□□□□ -0.03
CLN3-263ENST00000637871 PDE6DO43924 150 aa14.84□□□□□ -0.03
CLN3-263ENST00000637871 OR2C1O95371 312 aa14.84□□□□□ -0.03
CLN3-263ENST00000637871 CXorf1O96002 111 aa14.84□□□□□ -0.03
CLN3-263ENST00000637871 CEBPGP53567 150 aa14.84□□□□□ -0.03
CLN3-263ENST00000637871 RAB5BP61020 215 aa14.84□□□□□ -0.03
CLN3-263ENST00000637871 RHOBP62745 196 aa14.84□□□□□ -0.03
CLN3-263ENST00000637871 ARSJQ5FYB0 599 aaPredicted RBP14.84□□□□□ -0.03
CLN3-263ENST00000637871 PNKDQ8N490 385 aa14.84□□□□□ -0.03
CLN3-263ENST00000637871 HIST1H2BAQ96A08 127 aa14.84□□□□□ -0.03
CLN3-263ENST00000637871 C20orf24Q9BUV8 137 aa14.84□□□□□ -0.03
CLN3-263ENST00000637871 CHODLQ9H9P2 273 aa14.84□□□□□ -0.03
CLN3-263ENST00000637871 SDF2L1Q9HCN8 221 aa14.84□□□□□ -0.03
CLN3-263ENST00000637871 NAT8Q9UHE5 227 aa14.84□□□□□ -0.03
CLN3-263ENST00000637871 YLPM1P49750 1951 aaKnown RBP14.84□□□□□ -0.03
CLN3-263ENST00000637871 DOCK11Q5JSL3 2073 aa14.83□□□□□ -0.03
CLN3-263ENST00000637871 CRYBA1P05813 215 aa14.83□□□□□ -0.04
CLN3-263ENST00000637871 RNASE2P10153 161 aaKnown RBP14.83□□□□□ -0.04
CLN3-263ENST00000637871 B2MP61769 119 aa14.83□□□□□ -0.04
CLN3-263ENST00000637871 MMD2Q8IY49 270 aa14.83□□□□□ -0.04
CLN3-263ENST00000637871 BEX4Q9NWD9 120 aaPredicted RBP14.83□□□□□ -0.04
CLN3-263ENST00000637871 ZNRD1Q9P1U0 126 aa14.83□□□□□ -0.04
CLN3-263ENST00000637871 ZNF727A8MUV8 499 aa14.82□□□□□ -0.04
CLN3-263ENST00000637871 C1orf196B1AJZ1 125 aa14.82□□□□□ -0.04
CLN3-263ENST00000637871 F6UZH7 168 aa14.82□□□□□ -0.04
CLN3-263ENST00000637871 M0R1W7 72 aa14.82□□□□□ -0.04
CLN3-263ENST00000637871 YIF1AO95070 293 aa14.82□□□□□ -0.04
CLN3-263ENST00000637871 IGLV2-23P01705 113 aa14.82□□□□□ -0.04
CLN3-263ENST00000637871 FBP1P09467 338 aa14.82□□□□□ -0.04
CLN3-263ENST00000637871 STAG3L2P0CL84 134 aa14.82□□□□□ -0.04
CLN3-263ENST00000637871 STAG3L3P0CL85 134 aa14.82□□□□□ -0.04
CLN3-263ENST00000637871 CTRB1P17538 263 aa14.82□□□□□ -0.04
CLN3-263ENST00000637871 COMPP49747 757 aaPredicted RBP14.82□□□□□ -0.04
CLN3-263ENST00000637871 CD81P60033 236 aa14.82□□□□□ -0.04
CLN3-263ENST00000637871 CTRB2Q6GPI1 263 aa14.82□□□□□ -0.04
CLN3-263ENST00000637871 CYP2G1PQ6ZSU1 146 aa14.82□□□□□ -0.04
CLN3-263ENST00000637871 PATZ1Q9HBE1 687 aaKnown RBP14.82□□□□□ -0.04
CLN3-263ENST00000637871 ARL2-SNX15V9GYD0 113 aa14.82□□□□□ -0.04
CLN3-263ENST00000637871 BUB1B-PAK6H3BSN5 160 aa14.81□□□□□ -0.04
CLN3-263ENST00000637871 EFNA4P52798 201 aa14.81□□□□□ -0.04
CLN3-263ENST00000637871 PRR20EP86478 221 aa14.81□□□□□ -0.04
CLN3-263ENST00000637871 PRR20CP86479 221 aa14.81□□□□□ -0.04
CLN3-263ENST00000637871 PRR20DP86480 221 aa14.81□□□□□ -0.04
CLN3-263ENST00000637871 PRR20BP86481 221 aa14.81□□□□□ -0.04
CLN3-263ENST00000637871 PRR20AP86496 221 aa14.81□□□□□ -0.04
CLN3-263ENST00000637871 CD69Q07108 199 aa14.81□□□□□ -0.04
CLN3-263ENST00000637871 TMEM241Q24JQ0 296 aa14.81□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms