RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 TNFRSF19Q9NS68 423 aa12.08□□□□□ -0.48
TRIM28-209ENST00000597423 AKAP9Q99996 3911 aa12.07□□□□□ -0.48
TRIM28-209ENST00000597423 IGLC7A0M8Q6 106 aa12.07□□□□□ -0.48
TRIM28-209ENST00000597423 CGB1A6NKQ9 187 aa12.07□□□□□ -0.48
TRIM28-209ENST00000597423 TEX22C9J3V5 150 aa12.07□□□□□ -0.48
TRIM28-209ENST00000597423 CORTO00230 105 aa12.07□□□□□ -0.48
TRIM28-209ENST00000597423 CST7O76096 145 aa12.07□□□□□ -0.48
TRIM28-209ENST00000597423 DEFA4P12838 97 aa12.07□□□□□ -0.48
TRIM28-209ENST00000597423 NHLH2Q02577 135 aa12.07□□□□□ -0.48
TRIM28-209ENST00000597423 OPCMLQ14982 345 aa12.07□□□□□ -0.48
TRIM28-209ENST00000597423 LAMTOR1Q6IAA8 161 aa12.07□□□□□ -0.48
TRIM28-209ENST00000597423 SLC35E3Q7Z769 313 aa12.07□□□□□ -0.48
TRIM28-209ENST00000597423 ZNF114Q8NC26 417 aa12.07□□□□□ -0.48
TRIM28-209ENST00000597423 OR1P1Q8NH06 330 aa12.07□□□□□ -0.48
TRIM28-209ENST00000597423 SGMS2Q8NHU3 365 aa12.07□□□□□ -0.48
TRIM28-209ENST00000597423 RNASEH2CQ8TDP1 164 aaKnown RBP12.07□□□□□ -0.48
TRIM28-209ENST00000597423 OR4C12Q96R67 309 aa12.07□□□□□ -0.48
TRIM28-209ENST00000597423 GGACTQ9BVM4 153 aa12.07□□□□□ -0.48
TRIM28-209ENST00000597423 PRSS22Q9GZN4 317 aa12.07□□□□□ -0.48
TRIM28-209ENST00000597423 PARP11Q9NR21 331 aa12.07□□□□□ -0.48
TRIM28-209ENST00000597423 ZANQ9Y493 2812 aa12.06□□□□□ -0.48
TRIM28-209ENST00000597423 C15orf62A8K5M9 175 aa12.06□□□□□ -0.48
TRIM28-209ENST00000597423 NPIPB5A8MRT5 1133 aa12.06□□□□□ -0.48
TRIM28-209ENST00000597423 CLDN34H7C241 214 aa12.06□□□□□ -0.48
TRIM28-209ENST00000597423 BCL2L11O43521 198 aa12.06□□□□□ -0.48
TRIM28-209ENST00000597423 JTBO76095 146 aa12.06□□□□□ -0.48
TRIM28-209ENST00000597423 IGHG2P01859 326 aa12.06□□□□□ -0.48
TRIM28-209ENST00000597423 AMY1AP04745 511 aa12.06□□□□□ -0.48
TRIM28-209ENST00000597423 RNASE2P10153 161 aaKnown RBP12.06□□□□□ -0.48
TRIM28-209ENST00000597423 ZNF266Q14584 549 aa12.06□□□□□ -0.48
TRIM28-209ENST00000597423 BSXQ3C1V8 233 aa12.06□□□□□ -0.48
TRIM28-209ENST00000597423 AKIRIN2Q53H80 203 aa12.06□□□□□ -0.48
TRIM28-209ENST00000597423 OR8G2PQ6IF36 304 aa12.06□□□□□ -0.48
TRIM28-209ENST00000597423 ETFRF1Q6IPR1 90 aa12.06□□□□□ -0.48
TRIM28-209ENST00000597423 STPG2Q8N412 459 aa12.06□□□□□ -0.48
TRIM28-209ENST00000597423 LILRB2Q8N423 598 aa12.06□□□□□ -0.48
TRIM28-209ENST00000597423 TTC9CQ8N5M4 171 aa12.06□□□□□ -0.48
TRIM28-209ENST00000597423 TMEM217Q8N7C4 229 aa12.06□□□□□ -0.48
TRIM28-209ENST00000597423 THYN1Q9P016 225 aa12.06□□□□□ -0.48
TRIM28-209ENST00000597423 NAV3Q8IVL0 2385 aa12.05□□□□□ -0.48
TRIM28-209ENST00000597423 A0A1B0GW64 132 aa12.05□□□□□ -0.48
TRIM28-209ENST00000597423 TRIM77I1YAP6 450 aa12.05□□□□□ -0.48
TRIM28-209ENST00000597423 AP4M1O00189 453 aa12.05□□□□□ -0.48
TRIM28-209ENST00000597423 IFNA5P01569 189 aa12.05□□□□□ -0.48
TRIM28-209ENST00000597423 CRYGCP07315 174 aa12.05□□□□□ -0.48
TRIM28-209ENST00000597423 AREGP15514 252 aa12.05□□□□□ -0.48
TRIM28-209ENST00000597423 HIST1H1BP16401 226 aaKnown RBP12.05□□□□□ -0.48
TRIM28-209ENST00000597423 GPX4P36969 197 aaPredicted RBP12.05□□□□□ -0.48
TRIM28-209ENST00000597423 SSBP2P81877 361 aaPredicted RBP12.05□□□□□ -0.48
TRIM28-209ENST00000597423 SLC38A11Q08AI6 406 aa12.05□□□□□ -0.48
TRIM28-209ENST00000597423 UNQ5815/PRO19632Q6UWF5 114 aa12.05□□□□□ -0.48
TRIM28-209ENST00000597423 SLC51BQ86UW2 128 aa12.05□□□□□ -0.48
TRIM28-209ENST00000597423 LFNGQ8NES3 379 aa12.05□□□□□ -0.48
TRIM28-209ENST00000597423 OR5C1Q8NGR4 320 aa12.05□□□□□ -0.48
TRIM28-209ENST00000597423 CACNG8Q8WXS5 425 aa12.05□□□□□ -0.48
TRIM28-209ENST00000597423 P2RX4Q99571 388 aa12.05□□□□□ -0.48
TRIM28-209ENST00000597423 HSPB9Q9BQS6 159 aa12.05□□□□□ -0.48
TRIM28-209ENST00000597423 GON7Q9BXV9 100 aa12.05□□□□□ -0.48
TRIM28-209ENST00000597423 F11RQ9Y624 299 aaKnown RBP12.05□□□□□ -0.48
TRIM28-209ENST00000597423 RPS10-NUDT3A0A1W2PQS6 291 aa12.04□□□□□ -0.48
TRIM28-209ENST00000597423 IGF1P05019 195 aa12.04□□□□□ -0.48
TRIM28-209ENST00000597423 REG1AP05451 166 aa12.04□□□□□ -0.48
TRIM28-209ENST00000597423 CRYBA1P05813 215 aa12.04□□□□□ -0.48
TRIM28-209ENST00000597423 CTRB1P17538 263 aa12.04□□□□□ -0.48
TRIM28-209ENST00000597423 RPL15P61313 204 aaKnown RBP12.04□□□□□ -0.48
TRIM28-209ENST00000597423 BLCAPP62952 87 aa12.04□□□□□ -0.48
TRIM28-209ENST00000597423 EXOSC2Q13868 293 aaKnown RBP12.04□□□□□ -0.48
TRIM28-209ENST00000597423 ARSJQ5FYB0 599 aaPredicted RBP12.04□□□□□ -0.48
TRIM28-209ENST00000597423 CTRB2Q6GPI1 263 aa12.04□□□□□ -0.48
TRIM28-209ENST00000597423 SLC25A24Q6NUK1 477 aa12.04□□□□□ -0.48
TRIM28-209ENST00000597423 SCGB1C1Q8TD33 95 aa12.04□□□□□ -0.48
TRIM28-209ENST00000597423 ATP5SQ99766 215 aa12.04□□□□□ -0.48
TRIM28-209ENST00000597423 FAM103A1Q9BTL3 118 aaKnown RBP12.04□□□□□ -0.48
TRIM28-209ENST00000597423 ZNF471Q9BX82 626 aaPredicted RBP12.04□□□□□ -0.48
TRIM28-209ENST00000597423 SMIM3Q9BZL3 60 aa12.04□□□□□ -0.48
TRIM28-209ENST00000597423 WNT10AQ9GZT5 417 aa12.04□□□□□ -0.48
TRIM28-209ENST00000597423 GSX1Q9H4S2 264 aaPredicted RBP12.04□□□□□ -0.48
TRIM28-209ENST00000597423 FBXL17Q9UF56 701 aa12.04□□□□□ -0.48
TRIM28-209ENST00000597423 OTOGQ6ZRI0 2925 aa12.04□□□□□ -0.48
TRIM28-209ENST00000597423 TRAV41A0A0B4J266 112 aa12.03□□□□□ -0.48
TRIM28-209ENST00000597423 FNDC10F2Z333 226 aa12.03□□□□□ -0.48
TRIM28-209ENST00000597423 ATP6V0E1O15342 81 aa12.03□□□□□ -0.48
TRIM28-209ENST00000597423 FAM157CP0CG43 387 aa12.03□□□□□ -0.48
TRIM28-209ENST00000597423 APELAP0DMC3 54 aa12.03□□□□□ -0.48
TRIM28-209ENST00000597423 EGR2P11161 476 aaPredicted RBP12.03□□□□□ -0.48
TRIM28-209ENST00000597423 CRIP2P52943 208 aaPredicted RBP12.03□□□□□ -0.48
TRIM28-209ENST00000597423 DLK1P80370 383 aa12.03□□□□□ -0.48
TRIM28-209ENST00000597423 CLINT1Q14677 625 aa12.03□□□□□ -0.48
TRIM28-209ENST00000597423 EIF5AL1Q6IS14 154 aaKnown RBP12.03□□□□□ -0.48
TRIM28-209ENST00000597423 OR5T1Q8NG75 326 aa12.03□□□□□ -0.48
TRIM28-209ENST00000597423 TMEM147Q9BVK8 224 aa12.03□□□□□ -0.48
TRIM28-209ENST00000597423 UQCC1Q9NVA1 299 aa12.03□□□□□ -0.48
TRIM28-209ENST00000597423 ZNF580Q9UK33 172 aa12.03□□□□□ -0.48
TRIM28-209ENST00000597423 BOLA1Q9Y3E2 137 aa12.03□□□□□ -0.48
TRIM28-209ENST00000597423 ACANP16112 2415 aa12.02□□□□□ -0.48
TRIM28-209ENST00000597423 DNAJC9-AS1A6NH13 148 aa12.02□□□□□ -0.49
TRIM28-209ENST00000597423 SH2D7A6NKC9 451 aaPredicted RBP12.02□□□□□ -0.49
TRIM28-209ENST00000597423 PMS2P5A8MQ11 134 aa12.02□□□□□ -0.49
TRIM28-209ENST00000597423 INAFM1C9JVW0 142 aa12.02□□□□□ -0.49
TRIM28-209ENST00000597423 FBXO24O75426 580 aa12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 71.6 ms