RNA–Protein interactions for RNA: ENST00000590630.5

LIG3-213, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-213ENST00000590630 IL22RA2Q969J5 263 aa9.15□□□□□ -0.94
LIG3-213ENST00000590630 CXorf58Q96LI9 332 aa9.15□□□□□ -0.94
LIG3-213ENST00000590630 TMEM56-RWDD3S4R434 201 aa9.15□□□□□ -0.94
LIG3-213ENST00000590630 TRBV7-1A0A0A6YYK4 115 aa9.14□□□□□ -0.95
LIG3-213ENST00000590630 A0A0B4J293 547 aa9.14□□□□□ -0.95
LIG3-213ENST00000590630 NDUFB8O95169 186 aa9.14□□□□□ -0.95
LIG3-213ENST00000590630 TRBV12-3P01733 135 aa9.14□□□□□ -0.95
LIG3-213ENST00000590630 SUPT4H1P63272 117 aaKnown RBP9.14□□□□□ -0.95
LIG3-213ENST00000590630 SRPXP78539 464 aa9.14□□□□□ -0.95
LIG3-213ENST00000590630 TMEM187Q14656 261 aa9.14□□□□□ -0.95
LIG3-213ENST00000590630 IZUMO4Q1ZYL8 232 aa9.14□□□□□ -0.95
LIG3-213ENST00000590630 RPEL1Q2QD12 228 aa9.14□□□□□ -0.95
LIG3-213ENST00000590630 TMEM268Q5VZI3 342 aa9.14□□□□□ -0.95
LIG3-213ENST00000590630 TMED4Q7Z7H5 227 aa9.14□□□□□ -0.95
LIG3-213ENST00000590630 SELENOHQ8IZQ5 122 aaKnown RBP9.14□□□□□ -0.95
LIG3-213ENST00000590630 EEF1AKMT3Q96AZ1 226 aa9.14□□□□□ -0.95
LIG3-213ENST00000590630 C7orf50Q9BRJ6 194 aaKnown RBP9.14□□□□□ -0.95
LIG3-213ENST00000590630 PDCD10Q9BUL8 212 aa9.14□□□□□ -0.95
LIG3-213ENST00000590630 PLEKHA3Q9HB20 300 aa9.14□□□□□ -0.95
LIG3-213ENST00000590630 PTTG2Q9NZH5 202 aa9.14□□□□□ -0.95
LIG3-213ENST00000590630 DMRT1Q9Y5R6 373 aa9.14□□□□□ -0.95
LIG3-213ENST00000590630 F11RQ9Y624 299 aaKnown RBP9.14□□□□□ -0.95
LIG3-213ENST00000590630 PRKDCP78527 4128 aaKnown RBP9.14□□□□□ -0.95
LIG3-213ENST00000590630 BMPR1BO00238 502 aa9.13□□□□□ -0.95
LIG3-213ENST00000590630 ST8SIA3O43173 380 aa9.13□□□□□ -0.95
LIG3-213ENST00000590630 IFNA17P01571 189 aa9.13□□□□□ -0.95
LIG3-213ENST00000590630 KLF5Q13887 457 aaPredicted RBP9.13□□□□□ -0.95
LIG3-213ENST00000590630 TATDN3Q17R31 274 aa9.13□□□□□ -0.95
LIG3-213ENST00000590630 AARDQ4LEZ3 155 aa9.13□□□□□ -0.95
LIG3-213ENST00000590630 PDLIM3Q53GG5 364 aaPredicted RBP9.13□□□□□ -0.95
LIG3-213ENST00000590630 ACSM6Q6P461 480 aa9.13□□□□□ -0.95
LIG3-213ENST00000590630 OR2C3Q8N628 320 aa9.13□□□□□ -0.95
LIG3-213ENST00000590630 ZNF114Q8NC26 417 aa9.13□□□□□ -0.95
LIG3-213ENST00000590630 OR1P1Q8NH06 330 aa9.13□□□□□ -0.95
LIG3-213ENST00000590630 VN1R17PQ8TDU5 208 aa9.13□□□□□ -0.95
LIG3-213ENST00000590630 S100ZQ8WXG8 99 aa9.13□□□□□ -0.95
LIG3-213ENST00000590630 CCDC140Q96MF4 163 aa9.13□□□□□ -0.95
LIG3-213ENST00000590630 CCDC32Q9BV29 185 aa9.13□□□□□ -0.95
LIG3-213ENST00000590630 CACFD1Q9UGQ2 172 aa9.13□□□□□ -0.95
LIG3-213ENST00000590630 A0A0B4J2A0 478 aa9.12□□□□□ -0.95
LIG3-213ENST00000590630 A0A0G2JRQ6 117 aa9.12□□□□□ -0.95
LIG3-213ENST00000590630 INS-IGF2F8WCM5 200 aa9.12□□□□□ -0.95
LIG3-213ENST00000590630 SAP30O75446 220 aa9.12□□□□□ -0.95
LIG3-213ENST00000590630 NDUFB6O95139 128 aa9.12□□□□□ -0.95
LIG3-213ENST00000590630 CCR6P51684 374 aa9.12□□□□□ -0.95
LIG3-213ENST00000590630 KRTAP10-11P60412 298 aa9.12□□□□□ -0.95
LIG3-213ENST00000590630 UBE2MP61081 183 aaKnown RBP9.12□□□□□ -0.95
LIG3-213ENST00000590630 ERHP84090 104 aaKnown RBP9.12□□□□□ -0.95
LIG3-213ENST00000590630 SLC25A24Q6NUK1 477 aa9.12□□□□□ -0.95
LIG3-213ENST00000590630 LGI3Q8N145 548 aa9.12□□□□□ -0.95
LIG3-213ENST00000590630 CENPSQ8N2Z9 138 aa9.12□□□□□ -0.95
LIG3-213ENST00000590630 SLC35G3Q8N808 338 aa9.12□□□□□ -0.95
LIG3-213ENST00000590630 PPP1R14BQ96C90 147 aa9.12□□□□□ -0.95
LIG3-213ENST00000590630 ELOVL1Q9BW60 279 aa9.12□□□□□ -0.95
LIG3-213ENST00000590630 CTNNBIP1Q9NSA3 81 aaPredicted RBP9.12□□□□□ -0.95
LIG3-213ENST00000590630 AURKAIP1Q9NWT8 199 aaPredicted RBP9.12□□□□□ -0.95
LIG3-213ENST00000590630 SHPKQ9UHJ6 478 aa9.12□□□□□ -0.95
LIG3-213ENST00000590630 LINC00854A0A1B0GVQ3 168 aa9.11□□□□□ -0.95
LIG3-213ENST00000590630 MFSD2BA6NFX1 497 aa9.11□□□□□ -0.95
LIG3-213ENST00000590630 GGCTO75223 188 aaKnown RBP9.11□□□□□ -0.95
LIG3-213ENST00000590630 PRB2P02812 416 aaPredicted RBP9.11□□□□□ -0.95
LIG3-213ENST00000590630 VAMP1P23763 118 aa9.11□□□□□ -0.95
LIG3-213ENST00000590630 ARL3P36405 182 aa9.11□□□□□ -0.95
LIG3-213ENST00000590630 MFAP2P55001 183 aa9.11□□□□□ -0.95
LIG3-213ENST00000590630 SYNJ2BPP57105 145 aa9.11□□□□□ -0.95
LIG3-213ENST00000590630 SPCS3P61009 180 aa9.11□□□□□ -0.95
LIG3-213ENST00000590630 NMSQ5H8A3 153 aa9.11□□□□□ -0.95
LIG3-213ENST00000590630 CLEC19AQ6UXS0 136 aa9.11□□□□□ -0.95
LIG3-213ENST00000590630 Q6ZRM9 215 aa9.11□□□□□ -0.95
LIG3-213ENST00000590630 OR9G4Q8NGQ1 327 aa9.11□□□□□ -0.95
LIG3-213ENST00000590630 OR52E5Q8NH55 327 aa9.11□□□□□ -0.95
LIG3-213ENST00000590630 ZNF502Q8TBZ5 544 aa9.11□□□□□ -0.95
LIG3-213ENST00000590630 GPR146Q96CH1 333 aa9.11□□□□□ -0.95
LIG3-213ENST00000590630 OR4C12Q96R67 309 aa9.11□□□□□ -0.95
LIG3-213ENST00000590630 ATP6V0BQ99437 205 aa9.11□□□□□ -0.95
LIG3-213ENST00000590630 ENY2Q9NPA8 101 aa9.11□□□□□ -0.95
LIG3-213ENST00000590630 PRR13Q9NZ81 148 aa9.11□□□□□ -0.95
LIG3-213ENST00000590630 CACNG5Q9UF02 275 aa9.11□□□□□ -0.95
LIG3-213ENST00000590630 DUXBA0A1W2PPF3 345 aa9.1□□□□□ -0.95
LIG3-213ENST00000590630 PPP5D1E7EU14 171 aa9.1□□□□□ -0.95
LIG3-213ENST00000590630 IGHV3-23P01764 117 aa9.1□□□□□ -0.95
LIG3-213ENST00000590630 CLEC3BP05452 202 aa9.1□□□□□ -0.95
LIG3-213ENST00000590630 SULT1A3P0DMM9 295 aa9.1□□□□□ -0.95
LIG3-213ENST00000590630 SULT1A4P0DMN0 295 aa9.1□□□□□ -0.95
LIG3-213ENST00000590630 BTCP35070 178 aa9.1□□□□□ -0.95
LIG3-213ENST00000590630 SNCAP37840 140 aa9.1□□□□□ -0.95
LIG3-213ENST00000590630 HOXA1P49639 335 aaPredicted RBP9.1□□□□□ -0.95
LIG3-213ENST00000590630 PPP1R1AQ13522 171 aa9.1□□□□□ -0.95
LIG3-213ENST00000590630 SPINK9Q5DT21 86 aa9.1□□□□□ -0.95
LIG3-213ENST00000590630 LRTM2Q8N967 370 aa9.1□□□□□ -0.95
LIG3-213ENST00000590630 PEMTQ9UBM1 199 aa9.1□□□□□ -0.95
LIG3-213ENST00000590630 S4R3C0 116 aa9.1□□□□□ -0.95
LIG3-213ENST00000590630 K7EIM0 57 aa9.09□□□□□ -0.95
LIG3-213ENST00000590630 PLA2G10O15496 165 aa9.09□□□□□ -0.95
LIG3-213ENST00000590630 LYRM1O43325 122 aa9.09□□□□□ -0.95
LIG3-213ENST00000590630 SFT2D2O95562 160 aa9.09□□□□□ -0.95
LIG3-213ENST00000590630 SUB1P53999 127 aaKnown RBP eCLIP9.09□□□□□ -0.95
LIG3-213ENST00000590630 SMCO1Q147U7 214 aa9.09□□□□□ -0.95
LIG3-213ENST00000590630 LYZL2Q7Z4W2 148 aa9.09□□□□□ -0.95
LIG3-213ENST00000590630 GPHB5Q86YW7 130 aa9.09□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms