RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 OPN1MW3P0DN78 364 aa12.09□□□□□ -0.47
SS18-215ENST00000580642 OR13C7P0DN81 318 aa12.09□□□□□ -0.47
SS18-215ENST00000580642 MYOD1P15172 320 aa12.09□□□□□ -0.47
SS18-215ENST00000580642 EIF5AP63241 154 aaKnown RBP12.09□□□□□ -0.47
SS18-215ENST00000580642 WT1-ASQ06250 92 aa12.09□□□□□ -0.47
SS18-215ENST00000580642 LY6EQ16553 131 aa12.09□□□□□ -0.47
SS18-215ENST00000580642 AKIRIN2Q53H80 203 aa12.09□□□□□ -0.47
SS18-215ENST00000580642 C10orf55Q5SWW7 151 aa12.09□□□□□ -0.47
SS18-215ENST00000580642 OR10P1Q8NGE3 313 aa12.09□□□□□ -0.47
SS18-215ENST00000580642 OR1P1Q8NH06 330 aa12.09□□□□□ -0.47
SS18-215ENST00000580642 ZNF418Q8TF45 676 aaPredicted RBP12.09□□□□□ -0.47
SS18-215ENST00000580642 JMJD8Q96S16 334 aa12.09□□□□□ -0.47
SS18-215ENST00000580642 ARPC5LQ9BPX5 153 aa12.09□□□□□ -0.47
SS18-215ENST00000580642 ARL6Q9H0F7 186 aa12.09□□□□□ -0.47
SS18-215ENST00000580642 ACANP16112 2415 aa12.08□□□□□ -0.48
SS18-215ENST00000580642 A0A1B0GW64 132 aa12.08□□□□□ -0.48
SS18-215ENST00000580642 E7EUB6 86 aa12.08□□□□□ -0.48
SS18-215ENST00000580642 BCL2L11O43521 198 aa12.08□□□□□ -0.48
SS18-215ENST00000580642 BRI3O95415 125 aa12.08□□□□□ -0.48
SS18-215ENST00000580642 OR8U8P0C7N1 319 aa12.08□□□□□ -0.48
SS18-215ENST00000580642 RNASE2P10153 161 aaKnown RBP12.08□□□□□ -0.48
SS18-215ENST00000580642 NKX2-5P52952 324 aaPredicted RBP12.08□□□□□ -0.48
SS18-215ENST00000580642 ZNF266Q14584 549 aa12.08□□□□□ -0.48
SS18-215ENST00000580642 KLK9Q2XQG4 91 aa12.08□□□□□ -0.48
SS18-215ENST00000580642 SPINK9Q5DT21 86 aa12.08□□□□□ -0.48
SS18-215ENST00000580642 IL17RELQ6ZVW7 336 aa12.08□□□□□ -0.48
SS18-215ENST00000580642 TTC9CQ8N5M4 171 aa12.08□□□□□ -0.48
SS18-215ENST00000580642 OR10W1Q8NGF6 305 aa12.08□□□□□ -0.48
SS18-215ENST00000580642 OR1S2Q8NGQ3 325 aa12.08□□□□□ -0.48
SS18-215ENST00000580642 CACNG8Q8WXS5 425 aa12.08□□□□□ -0.48
SS18-215ENST00000580642 OR4C12Q96R67 309 aa12.08□□□□□ -0.48
SS18-215ENST00000580642 SMR3AQ99954 134 aa12.08□□□□□ -0.48
SS18-215ENST00000580642 NPFFR1Q9GZQ6 430 aa12.08□□□□□ -0.48
SS18-215ENST00000580642 KLK9Q9UKQ9 250 aa12.08□□□□□ -0.48
SS18-215ENST00000580642 HIVEP2P31629 2446 aa12.08□□□□□ -0.48
SS18-215ENST00000580642 TNCP24821 2201 aa12.07□□□□□ -0.48
SS18-215ENST00000580642 TLN2Q9Y4G6 2542 aa12.07□□□□□ -0.48
SS18-215ENST00000580642 PMS2P5A8MQ11 134 aa12.07□□□□□ -0.48
SS18-215ENST00000580642 H3BP45 60 aa12.07□□□□□ -0.48
SS18-215ENST00000580642 JTBO76095 146 aa12.07□□□□□ -0.48
SS18-215ENST00000580642 CTRB1P17538 263 aa12.07□□□□□ -0.48
SS18-215ENST00000580642 GPX4P36969 197 aaPredicted RBP12.07□□□□□ -0.48
SS18-215ENST00000580642 EXOSC2Q13868 293 aaKnown RBP12.07□□□□□ -0.48
SS18-215ENST00000580642 CTRB2Q6GPI1 263 aa12.07□□□□□ -0.48
SS18-215ENST00000580642 ETV3LQ6ZN32 361 aa12.07□□□□□ -0.48
SS18-215ENST00000580642 SLC51BQ86UW2 128 aa12.07□□□□□ -0.48
SS18-215ENST00000580642 ABHD5Q8WTS1 349 aa12.07□□□□□ -0.48
SS18-215ENST00000580642 GON7Q9BXV9 100 aa12.07□□□□□ -0.48
SS18-215ENST00000580642 PRSS22Q9GZN4 317 aa12.07□□□□□ -0.48
SS18-215ENST00000580642 F11RQ9Y624 299 aaKnown RBP12.07□□□□□ -0.48
SS18-215ENST00000580642 AP4M1O00189 453 aa12.06□□□□□ -0.48
SS18-215ENST00000580642 IFNA4P05014 189 aa12.06□□□□□ -0.48
SS18-215ENST00000580642 METTL15P1P0C7V9 234 aa12.06□□□□□ -0.48
SS18-215ENST00000580642 FAM157CP0CG43 387 aa12.06□□□□□ -0.48
SS18-215ENST00000580642 EGR2P11161 476 aaPredicted RBP12.06□□□□□ -0.48
SS18-215ENST00000580642 HIST1H1BP16401 226 aaKnown RBP12.06□□□□□ -0.48
SS18-215ENST00000580642 NHLH2Q02577 135 aa12.06□□□□□ -0.48
SS18-215ENST00000580642 OPCMLQ14982 345 aa12.06□□□□□ -0.48
SS18-215ENST00000580642 ETFRF1Q6IPR1 90 aa12.06□□□□□ -0.48
SS18-215ENST00000580642 SLC35E3Q7Z769 313 aa12.06□□□□□ -0.48
SS18-215ENST00000580642 P2RX4Q99571 388 aa12.06□□□□□ -0.48
SS18-215ENST00000580642 HSPB9Q9BQS6 159 aa12.06□□□□□ -0.48
SS18-215ENST00000580642 PARD6GQ9BYG4 376 aaPredicted RBP12.06□□□□□ -0.48
SS18-215ENST00000580642 BORCS7-ASMTA0A0B4J1R7 106 aa12.05□□□□□ -0.48
SS18-215ENST00000580642 CST7O76096 145 aa12.05□□□□□ -0.48
SS18-215ENST00000580642 AREGP15514 252 aa12.05□□□□□ -0.48
SS18-215ENST00000580642 HILS1P60008 231 aa12.05□□□□□ -0.48
SS18-215ENST00000580642 DLK1P80370 383 aa12.05□□□□□ -0.48
SS18-215ENST00000580642 NDPQ00604 133 aa12.05□□□□□ -0.48
SS18-215ENST00000580642 VWC2Q2TAL6 325 aa12.05□□□□□ -0.48
SS18-215ENST00000580642 Q8N2B8 174 aa12.05□□□□□ -0.48
SS18-215ENST00000580642 UBAC2Q8NBM4 344 aa12.05□□□□□ -0.48
SS18-215ENST00000580642 OR5C1Q8NGR4 320 aa12.05□□□□□ -0.48
SS18-215ENST00000580642 STOML3Q8TAV4 291 aa12.05□□□□□ -0.48
SS18-215ENST00000580642 FAM110DQ8TAY7 271 aaPredicted RBP12.05□□□□□ -0.48
SS18-215ENST00000580642 TMEM170AQ8WVE7 144 aa12.05□□□□□ -0.48
SS18-215ENST00000580642 THYN1Q9P016 225 aa12.05□□□□□ -0.48
SS18-215ENST00000580642 FBXL17Q9UF56 701 aa12.05□□□□□ -0.48
SS18-215ENST00000580642 RPS10-NUDT3A0A1W2PQS6 291 aa12.04□□□□□ -0.48
SS18-215ENST00000580642 PRSS46E5RG02 174 aa12.04□□□□□ -0.48
SS18-215ENST00000580642 H3BUA1 57 aa12.04□□□□□ -0.48
SS18-215ENST00000580642 TRIM77I1YAP6 450 aa12.04□□□□□ -0.48
SS18-215ENST00000580642 ATP6V0E1O15342 81 aa12.04□□□□□ -0.48
SS18-215ENST00000580642 FBXO24O75426 580 aa12.04□□□□□ -0.48
SS18-215ENST00000580642 RNASE1P07998 156 aaKnown RBP12.04□□□□□ -0.48
SS18-215ENST00000580642 SLC38A11Q08AI6 406 aa12.04□□□□□ -0.48
SS18-215ENST00000580642 C19orf54Q5BKX5 351 aa12.04□□□□□ -0.48
SS18-215ENST00000580642 ATP5SQ99766 215 aa12.04□□□□□ -0.48
SS18-215ENST00000580642 TMEM147Q9BVK8 224 aa12.04□□□□□ -0.48
SS18-215ENST00000580642 PARP11Q9NR21 331 aa12.04□□□□□ -0.48
SS18-215ENST00000580642 SVEP1Q4LDE5 3571 aa12.03□□□□□ -0.48
SS18-215ENST00000580642 TRAV41A0A0B4J266 112 aa12.03□□□□□ -0.48
SS18-215ENST00000580642 DNAJC9-AS1A6NH13 148 aa12.03□□□□□ -0.48
SS18-215ENST00000580642 CRLF1O75462 422 aa12.03□□□□□ -0.48
SS18-215ENST00000580642 IFNA5P01569 189 aa12.03□□□□□ -0.48
SS18-215ENST00000580642 DEFA4P12838 97 aa12.03□□□□□ -0.48
SS18-215ENST00000580642 BLCAPP62952 87 aa12.03□□□□□ -0.48
SS18-215ENST00000580642 ASPHD1Q5U4P2 390 aa12.03□□□□□ -0.48
SS18-215ENST00000580642 EIF5AL1Q6IS14 154 aaKnown RBP12.03□□□□□ -0.48
SS18-215ENST00000580642 HAPLN4Q86UW8 402 aa12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms