RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 KISS1Q15726 138 aa0.67□□□□□ -2.3
SS18-214ENST00000580003 COQ5Q5HYK3 327 aa0.67□□□□□ -2.3
SS18-214ENST00000580003 Q8N814 137 aa0.67□□□□□ -2.3
SS18-214ENST00000580003 ATP6V1G3Q96LB4 118 aa0.67□□□□□ -2.3
SS18-214ENST00000580003 UPF3BQ9BZI7 483 aaKnown RBP0.67□□□□□ -2.3
SS18-214ENST00000580003 OR2T1O43869 369 aa0.66□□□□□ -2.3
SS18-214ENST00000580003 APOEP02649 317 aa0.66□□□□□ -2.3
SS18-214ENST00000580003 ASAH2BP0C7U1 165 aa0.66□□□□□ -2.3
SS18-214ENST00000580003 FKBP2P26885 142 aaKnown RBP0.66□□□□□ -2.3
SS18-214ENST00000580003 IFITM2Q01629 132 aa0.66□□□□□ -2.3
SS18-214ENST00000580003 MED21Q13503 144 aa0.66□□□□□ -2.3
SS18-214ENST00000580003 GRK1Q15835 563 aa0.66□□□□□ -2.3
SS18-214ENST00000580003 KRTAP21-1Q3LI58 79 aa0.66□□□□□ -2.3
SS18-214ENST00000580003 DEFB128Q7Z7B8 93 aa0.66□□□□□ -2.3
SS18-214ENST00000580003 OOSP2Q86WS3 158 aa0.66□□□□□ -2.3
SS18-214ENST00000580003 PHF13Q86YI8 300 aaPredicted RBP0.66□□□□□ -2.3
SS18-214ENST00000580003 C3orf18Q9UK00 162 aa0.66□□□□□ -2.3
SS18-214ENST00000580003 IGKV1D-42A0A075B6H8 117 aa0.65□□□□□ -2.31
SS18-214ENST00000580003 A0A0J9YY10 115 aa0.65□□□□□ -2.31
SS18-214ENST00000580003 A0A1B0GX78 115 aa0.65□□□□□ -2.31
SS18-214ENST00000580003 GOLGA6L19H0YKK7 550 aa0.65□□□□□ -2.31
SS18-214ENST00000580003 C8orf88P0DMB2 117 aa0.65□□□□□ -2.31
SS18-214ENST00000580003 MARCKSL1P49006 195 aa0.65□□□□□ -2.31
SS18-214ENST00000580003 BLVRAP53004 296 aa0.65□□□□□ -2.31
SS18-214ENST00000580003 KCNJ8Q15842 424 aa0.65□□□□□ -2.31
SS18-214ENST00000580003 AADACL3Q5VUY0 350 aa0.65□□□□□ -2.31
SS18-214ENST00000580003 LINC00311Q8N616 119 aa0.65□□□□□ -2.31
SS18-214ENST00000580003 OR2T4Q8NH00 348 aa0.65□□□□□ -2.31
SS18-214ENST00000580003 ZNF418Q8TF45 676 aaPredicted RBP0.65□□□□□ -2.31
SS18-214ENST00000580003 SCGB3A1Q96QR1 104 aa0.65□□□□□ -2.31
SS18-214ENST00000580003 CISHQ9NSE2 258 aa0.65□□□□□ -2.31
SS18-214ENST00000580003 ABCC11Q96J66 1382 aa0.65□□□□□ -2.31
SS18-214ENST00000580003 MAST2Q6P0Q8 1798 aa0.65□□□□□ -2.31
SS18-214ENST00000580003 DCCP43146 1447 aa0.64□□□□□ -2.31
SS18-214ENST00000580003 RAB4BP61018 213 aa0.64□□□□□ -2.31
SS18-214ENST00000580003 MLLT11Q13015 90 aaPredicted RBP0.64□□□□□ -2.31
SS18-214ENST00000580003 GUK1Q16774 197 aa0.64□□□□□ -2.31
SS18-214ENST00000580003 SPANXN5Q5MJ07 72 aa0.64□□□□□ -2.31
SS18-214ENST00000580003 CLVS2Q5SYC1 327 aa0.64□□□□□ -2.31
SS18-214ENST00000580003 Q6ZQT0 140 aa0.64□□□□□ -2.31
SS18-214ENST00000580003 SBSPONQ8IVN8 264 aa0.64□□□□□ -2.31
SS18-214ENST00000580003 IQCF2Q8IXL9 164 aa0.64□□□□□ -2.31
SS18-214ENST00000580003 FAM9CQ8IZT9 166 aa0.64□□□□□ -2.31
SS18-214ENST00000580003 GINS4Q9BRT9 223 aa0.64□□□□□ -2.31
SS18-214ENST00000580003 DERL1Q9BUN8 251 aa0.64□□□□□ -2.31
SS18-214ENST00000580003 COL4A5P29400 1685 aa0.63□□□□□ -2.31
SS18-214ENST00000580003 A0A1B0GV50 99 aa0.63□□□□□ -2.31
SS18-214ENST00000580003 C2orf70A6NJV1 201 aa0.63□□□□□ -2.31
SS18-214ENST00000580003 OR1I1O60431 355 aa0.63□□□□□ -2.31
SS18-214ENST00000580003 SPI1P17947 270 aa0.63□□□□□ -2.31
SS18-214ENST00000580003 GDF5OSQ5U4N7 250 aa0.63□□□□□ -2.31
SS18-214ENST00000580003 PIGXQ8TBF5 258 aa0.63□□□□□ -2.31
SS18-214ENST00000580003 CCDC88AQ3V6T2 1871 aa0.63□□□□□ -2.31
SS18-214ENST00000580003 CLDN25C9JDP6 229 aa0.62□□□□□ -2.31
SS18-214ENST00000580003 PHGR1C9JFL3 82 aa0.62□□□□□ -2.31
SS18-214ENST00000580003 CTSDP07339 412 aaPredicted RBP0.62□□□□□ -2.31
SS18-214ENST00000580003 SPANXN3Q5MJ09 141 aa0.62□□□□□ -2.31
SS18-214ENST00000580003 LRRN1Q6UXK5 716 aa0.62□□□□□ -2.31
SS18-214ENST00000580003 DPPA3Q6W0C5 159 aa0.62□□□□□ -2.31
SS18-214ENST00000580003 Q8N6K4 173 aa0.62□□□□□ -2.31
SS18-214ENST00000580003 PFN4Q8NHR9 129 aa0.62□□□□□ -2.31
SS18-214ENST00000580003 WDR61Q9GZS3 305 aaKnown RBP0.62□□□□□ -2.31
SS18-214ENST00000580003 EVPLLA8MZ36 301 aa0.61□□□□□ -2.31
SS18-214ENST00000580003 CXCR6O00574 342 aa0.61□□□□□ -2.31
SS18-214ENST00000580003 ACOX3O15254 700 aa0.61□□□□□ -2.31
SS18-214ENST00000580003 COX5BP10606 129 aa0.61□□□□□ -2.31
SS18-214ENST00000580003 CASQ1P31415 396 aa0.61□□□□□ -2.31
SS18-214ENST00000580003 PDE6HQ13956 83 aa0.61□□□□□ -2.31
SS18-214ENST00000580003 RPL22L1Q6P5R6 122 aaKnown RBP0.61□□□□□ -2.31
SS18-214ENST00000580003 AMELYQ99218 206 aa0.61□□□□□ -2.31
SS18-214ENST00000580003 FGFR1OP2Q9NVK5 253 aa0.61□□□□□ -2.31
SS18-214ENST00000580003 M0R2N4 97 aa0.6□□□□□ -2.31
SS18-214ENST00000580003 CRYGAP11844 174 aa0.6□□□□□ -2.31
SS18-214ENST00000580003 HIST1H2BOP23527 126 aa0.6□□□□□ -2.31
SS18-214ENST00000580003 HIST1H2BBP33778 126 aa0.6□□□□□ -2.31
SS18-214ENST00000580003 HIST1H2BDP58876 126 aa0.6□□□□□ -2.31
SS18-214ENST00000580003 NAA20P61599 178 aa0.6□□□□□ -2.31
SS18-214ENST00000580003 HIST1H2BCP62807 126 aa0.6□□□□□ -2.31
SS18-214ENST00000580003 HIST2H2BEQ16778 126 aa0.6□□□□□ -2.31
SS18-214ENST00000580003 HIST2H2BFQ5QNW6 126 aaPredicted RBP0.6□□□□□ -2.31
SS18-214ENST00000580003 BPIFA4PQ86YQ2 179 aa0.6□□□□□ -2.31
SS18-214ENST00000580003 OR4E2Q8NGC2 313 aa0.6□□□□□ -2.31
SS18-214ENST00000580003 HIST1H2BHQ93079 126 aa0.6□□□□□ -2.31
SS18-214ENST00000580003 HIST1H2BNQ99877 126 aa0.6□□□□□ -2.31
SS18-214ENST00000580003 HIST1H2BMQ99879 126 aa0.6□□□□□ -2.31
SS18-214ENST00000580003 RALGAPA2Q2PPJ7 1873 aa0.6□□□□□ -2.31
SS18-214ENST00000580003 A0A0D9SG52 128 aa0.59□□□□□ -2.31
SS18-214ENST00000580003 INMT-MINDY4F8WBC2 141 aa0.59□□□□□ -2.31
SS18-214ENST00000580003 M0QZ92 97 aa0.59□□□□□ -2.31
SS18-214ENST00000580003 SPATA8Q6RVD6 105 aa0.59□□□□□ -2.31
SS18-214ENST00000580003 Q6ZS49 121 aa0.59□□□□□ -2.31
SS18-214ENST00000580003 ACER3Q9NUN7 267 aa0.59□□□□□ -2.31
SS18-214ENST00000580003 EML5Q05BV3 1969 aa0.59□□□□□ -2.32
SS18-214ENST00000580003 OCM2P0CE71 109 aa0.58□□□□□ -2.32
SS18-214ENST00000580003 OGFRL1Q5TC84 451 aaPredicted RBP0.58□□□□□ -2.32
SS18-214ENST00000580003 TMEM147Q9BVK8 224 aa0.58□□□□□ -2.32
SS18-214ENST00000580003 ULBP3Q9BZM4 244 aa0.58□□□□□ -2.32
SS18-214ENST00000580003 A0A0A6YYH2 397 aa0.57□□□□□ -2.32
SS18-214ENST00000580003 TRAV1-1A0A0B4J248 108 aa0.57□□□□□ -2.32
SS18-214ENST00000580003 A6NJ64 397 aa0.57□□□□□ -2.32
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms