RNA–Protein interactions for RNA: ENST00000578954.5

SS18-211, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 756 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-211ENST00000578954 LINC01548A6NM66 108 aa12.71□□□□□ -0.37
SS18-211ENST00000578954 C15orf62A8K5M9 175 aa12.71□□□□□ -0.37
SS18-211ENST00000578954 NPIPB5A8MRT5 1133 aa12.71□□□□□ -0.37
SS18-211ENST00000578954 OR13C7P0DN81 318 aa12.71□□□□□ -0.37
SS18-211ENST00000578954 HKR1P10072 659 aa12.71□□□□□ -0.37
SS18-211ENST00000578954 RNASE2P10153 161 aaKnown RBP12.71□□□□□ -0.37
SS18-211ENST00000578954 AREGP15514 252 aa12.71□□□□□ -0.37
SS18-211ENST00000578954 CTRB1P17538 263 aa12.71□□□□□ -0.37
SS18-211ENST00000578954 KLK9Q2XQG4 91 aa12.71□□□□□ -0.37
SS18-211ENST00000578954 C2orf83Q53S99 150 aa12.71□□□□□ -0.37
SS18-211ENST00000578954 CTRB2Q6GPI1 263 aa12.71□□□□□ -0.37
SS18-211ENST00000578954 Q6ZS46 218 aa12.71□□□□□ -0.37
SS18-211ENST00000578954 SLC35E3Q7Z769 313 aa12.71□□□□□ -0.37
SS18-211ENST00000578954 TTC9CQ8N5M4 171 aa12.71□□□□□ -0.37
SS18-211ENST00000578954 TMEM252Q8N6L7 170 aa12.71□□□□□ -0.37
SS18-211ENST00000578954 PRSS22Q9GZN4 317 aa12.71□□□□□ -0.37
SS18-211ENST00000578954 PARP11Q9NR21 331 aa12.71□□□□□ -0.37
SS18-211ENST00000578954 KLK9Q9UKQ9 250 aa12.71□□□□□ -0.37
SS18-211ENST00000578954 IGSF23A1L1A6 192 aa12.7□□□□□ -0.38
SS18-211ENST00000578954 FAM24AA6NFZ4 105 aa12.7□□□□□ -0.38
SS18-211ENST00000578954 H3BP45 60 aa12.7□□□□□ -0.38
SS18-211ENST00000578954 BOLA2-SMG1P6H3BVE0 249 aa12.7□□□□□ -0.38
SS18-211ENST00000578954 TRIM77I1YAP6 450 aa12.7□□□□□ -0.38
SS18-211ENST00000578954 NPY1RP25929 384 aa12.7□□□□□ -0.38
SS18-211ENST00000578954 RPP30P78346 268 aaKnown RBP12.7□□□□□ -0.38
SS18-211ENST00000578954 ZNF345Q14585 488 aa12.7□□□□□ -0.38
SS18-211ENST00000578954 AKIRIN2Q53H80 203 aa12.7□□□□□ -0.38
SS18-211ENST00000578954 SPANXN5Q5MJ07 72 aa12.7□□□□□ -0.38
SS18-211ENST00000578954 STPG2Q8N412 459 aa12.7□□□□□ -0.38
SS18-211ENST00000578954 ABHD5Q8WTS1 349 aa12.7□□□□□ -0.38
SS18-211ENST00000578954 P2RX4Q99571 388 aa12.7□□□□□ -0.38
SS18-211ENST00000578954 SLC25A31Q9H0C2 315 aa12.7□□□□□ -0.38
SS18-211ENST00000578954 STRAPQ9Y3F4 350 aaKnown RBP12.7□□□□□ -0.38
SS18-211ENST00000578954 PMS2P5A8MQ11 134 aa12.69□□□□□ -0.38
SS18-211ENST00000578954 AP4M1O00189 453 aa12.69□□□□□ -0.38
SS18-211ENST00000578954 ARPC5O15511 151 aa12.69□□□□□ -0.38
SS18-211ENST00000578954 TSPAN9O75954 239 aa12.69□□□□□ -0.38
SS18-211ENST00000578954 SCAF4O95104 1147 aaKnown RBP12.69□□□□□ -0.38
SS18-211ENST00000578954 RPL12P30050 165 aaKnown RBP12.69□□□□□ -0.38
SS18-211ENST00000578954 CAV2P51636 162 aa12.69□□□□□ -0.38
SS18-211ENST00000578954 BAXQ07812 192 aa12.69□□□□□ -0.38
SS18-211ENST00000578954 OR2F1Q13607 317 aa12.69□□□□□ -0.38
SS18-211ENST00000578954 C9orf152Q5JTZ5 239 aa12.69□□□□□ -0.38
SS18-211ENST00000578954 ACOT7LQ6ZUV0 252 aa12.69□□□□□ -0.38
SS18-211ENST00000578954 LFNGQ8NES3 379 aa12.69□□□□□ -0.38
SS18-211ENST00000578954 OR1P1Q8NH06 330 aa12.69□□□□□ -0.38
SS18-211ENST00000578954 FAM110DQ8TAY7 271 aaPredicted RBP12.69□□□□□ -0.38
SS18-211ENST00000578954 F11RQ9Y624 299 aaKnown RBP12.69□□□□□ -0.38
SS18-211ENST00000578954 FAM181BA6NEQ2 426 aa12.68□□□□□ -0.38
SS18-211ENST00000578954 TCF21O43680 179 aa12.68□□□□□ -0.38
SS18-211ENST00000578954 FBXO24O75426 580 aa12.68□□□□□ -0.38
SS18-211ENST00000578954 IFNA10P01566 189 aa12.68□□□□□ -0.38
SS18-211ENST00000578954 HNRNPCP07910 306 aaKnown RBP eCLIP12.68□□□□□ -0.38
SS18-211ENST00000578954 SNCAP37840 140 aa12.68□□□□□ -0.38
SS18-211ENST00000578954 SULT1A1P50225 295 aa12.68□□□□□ -0.38
SS18-211ENST00000578954 EWSR1Q01844 656 aaKnown RBP eCLIP12.68□□□□□ -0.38
SS18-211ENST00000578954 TMEM267Q0VDI3 215 aaPredicted RBP12.68□□□□□ -0.38
SS18-211ENST00000578954 UNQ5815/PRO19632Q6UWF5 114 aa12.68□□□□□ -0.38
SS18-211ENST00000578954 INO80EQ8NBZ0 244 aaPredicted RBP12.68□□□□□ -0.38
SS18-211ENST00000578954 OR1L6Q8NGR2 347 aa12.68□□□□□ -0.38
SS18-211ENST00000578954 MFFQ9GZY8 342 aa12.68□□□□□ -0.38
SS18-211ENST00000578954 HSPB11Q9Y547 144 aa12.68□□□□□ -0.38
SS18-211ENST00000578954 TRAV41A0A0B4J266 112 aa12.67□□□□□ -0.38
SS18-211ENST00000578954 PRSS46E5RG02 174 aa12.67□□□□□ -0.38
SS18-211ENST00000578954 BRI3O95415 125 aa12.67□□□□□ -0.38
SS18-211ENST00000578954 REG1AP05451 166 aa12.67□□□□□ -0.38
SS18-211ENST00000578954 APELAP0DMC3 54 aa12.67□□□□□ -0.38
SS18-211ENST00000578954 CXCL2P19875 107 aa12.67□□□□□ -0.38
SS18-211ENST00000578954 PPIFP30405 207 aaKnown RBP12.67□□□□□ -0.38
SS18-211ENST00000578954 NUP62P37198 522 aaPredicted RBP12.67□□□□□ -0.38
SS18-211ENST00000578954 SUB1P53999 127 aaKnown RBP eCLIP12.67□□□□□ -0.38
SS18-211ENST00000578954 MFAP2P55001 183 aa12.67□□□□□ -0.38
SS18-211ENST00000578954 RAB11AP62491 216 aa12.67□□□□□ -0.38
SS18-211ENST00000578954 CFHR3Q02985 330 aa12.67□□□□□ -0.38
SS18-211ENST00000578954 LAMTOR1Q6IAA8 161 aa12.67□□□□□ -0.38
SS18-211ENST00000578954 HAPLN4Q86UW8 402 aa12.67□□□□□ -0.38
SS18-211ENST00000578954 STX12Q86Y82 276 aa12.67□□□□□ -0.38
SS18-211ENST00000578954 C9orf62Q8N4C0 152 aa12.67□□□□□ -0.38
SS18-211ENST00000578954 KCNRGQ8N5I3 272 aa12.67□□□□□ -0.38
SS18-211ENST00000578954 DMRT1Q9Y5R6 373 aa12.67□□□□□ -0.38
SS18-211ENST00000578954 G3V318 75 aa12.66□□□□□ -0.38
SS18-211ENST00000578954 OR8U8P0C7N1 319 aa12.66□□□□□ -0.38
SS18-211ENST00000578954 METTL15P1P0C7V9 234 aa12.66□□□□□ -0.38
SS18-211ENST00000578954 EIF2B2P49770 351 aaKnown RBP12.66□□□□□ -0.38
SS18-211ENST00000578954 ECSCRQ19T08 205 aa12.66□□□□□ -0.38
SS18-211ENST00000578954 LGALSLQ3ZCW2 172 aaPredicted RBP12.66□□□□□ -0.38
SS18-211ENST00000578954 Q6ZSV7 163 aa12.66□□□□□ -0.38
SS18-211ENST00000578954 RNASEH2CQ8TDP1 164 aaKnown RBP12.66□□□□□ -0.38
SS18-211ENST00000578954 WNT10AQ9GZT5 417 aa12.66□□□□□ -0.38
SS18-211ENST00000578954 IGLV11-55A0A075B6I3 123 aa12.65□□□□□ -0.38
SS18-211ENST00000578954 A0A0D9SG52 128 aa12.65□□□□□ -0.38
SS18-211ENST00000578954 H3BUA1 57 aa12.65□□□□□ -0.38
SS18-211ENST00000578954 CORTO00230 105 aa12.65□□□□□ -0.38
SS18-211ENST00000578954 NKX2-5P52952 324 aaPredicted RBP12.65□□□□□ -0.38
SS18-211ENST00000578954 NHLH2Q02577 135 aa12.65□□□□□ -0.38
SS18-211ENST00000578954 ARL16Q0P5N6 197 aa12.65□□□□□ -0.38
SS18-211ENST00000578954 ETV3LQ6ZN32 361 aa12.65□□□□□ -0.38
SS18-211ENST00000578954 C19orf35Q6ZS72 473 aa12.65□□□□□ -0.38
SS18-211ENST00000578954 FANCD2OSQ96PS1 177 aa12.65□□□□□ -0.38
SS18-211ENST00000578954 C16orf95Q9H693 158 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms