RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 STOML3Q8TAV4 291 aa4.73□□□□□ -1.65
VPS53-212ENST00000572259 BORCS8Q96FH0 119 aa4.73□□□□□ -1.65
VPS53-212ENST00000572259 MRAP2Q96G30 205 aa4.73□□□□□ -1.65
VPS53-212ENST00000572259 UBE2E2Q96LR5 201 aa4.73□□□□□ -1.65
VPS53-212ENST00000572259 TM2D1Q9BX74 207 aa4.73□□□□□ -1.65
VPS53-212ENST00000572259 SUCNR1Q9BXA5 334 aa4.73□□□□□ -1.65
VPS53-212ENST00000572259 OR51I2Q9H344 312 aa4.73□□□□□ -1.65
VPS53-212ENST00000572259 MAP1LC3AQ9H492 121 aa4.73□□□□□ -1.65
VPS53-212ENST00000572259 EXOSC4Q9NPD3 245 aaKnown RBP4.73□□□□□ -1.65
VPS53-212ENST00000572259 SCN3BQ9NY72 215 aa4.73□□□□□ -1.65
VPS53-212ENST00000572259 KCNIP1Q9NZI2 227 aa4.73□□□□□ -1.65
VPS53-212ENST00000572259 GLS2Q9UI32 602 aa4.73□□□□□ -1.65
VPS53-212ENST00000572259 SVEP1Q4LDE5 3571 aa4.72□□□□□ -1.65
VPS53-212ENST00000572259 IGHV3OR15-7A0A075B7D8 119 aa4.72□□□□□ -1.65
VPS53-212ENST00000572259 LOC107986453A0A1B0GWG9 222 aa4.72□□□□□ -1.65
VPS53-212ENST00000572259 NCBP2LA6PVI3 153 aaKnown RBP4.72□□□□□ -1.65
VPS53-212ENST00000572259 DISC1C4P0D8 188 aa4.72□□□□□ -1.65
VPS53-212ENST00000572259 E9PLD3 99 aa4.72□□□□□ -1.65
VPS53-212ENST00000572259 F6UB75 175 aa4.72□□□□□ -1.65
VPS53-212ENST00000572259 TAAR5O14804 337 aa4.72□□□□□ -1.65
VPS53-212ENST00000572259 NOS1APO75052 506 aaPredicted RBP4.72□□□□□ -1.65
VPS53-212ENST00000572259 MT-ND4P03905 459 aa4.72□□□□□ -1.65
VPS53-212ENST00000572259 RBMY1CP0DJD4 496 aa4.72□□□□□ -1.65
VPS53-212ENST00000572259 ANOS1P23352 680 aa4.72□□□□□ -1.65
VPS53-212ENST00000572259 DLX1P56177 255 aa4.72□□□□□ -1.65
VPS53-212ENST00000572259 TAS2R43P59537 309 aa4.72□□□□□ -1.65
VPS53-212ENST00000572259 RPL22L1Q6P5R6 122 aaKnown RBP4.72□□□□□ -1.65
VPS53-212ENST00000572259 LYPD2Q6UXB3 125 aa4.72□□□□□ -1.65
VPS53-212ENST00000572259 STX19Q8N4C7 294 aa4.72□□□□□ -1.65
VPS53-212ENST00000572259 ZNF561Q8N587 486 aa4.72□□□□□ -1.65
VPS53-212ENST00000572259 ARRDC1Q8N5I2 433 aa4.72□□□□□ -1.65
VPS53-212ENST00000572259 BEST4Q8NFU0 473 aa4.72□□□□□ -1.65
VPS53-212ENST00000572259 OR10G7Q8NGN6 311 aa4.72□□□□□ -1.65
VPS53-212ENST00000572259 ZFAND1Q8TCF1 268 aa4.72□□□□□ -1.65
VPS53-212ENST00000572259 AQP3Q92482 292 aa4.72□□□□□ -1.65
VPS53-212ENST00000572259 ST6GAL2Q96JF0 529 aa4.72□□□□□ -1.65
VPS53-212ENST00000572259 CCL13Q99616 98 aa4.72□□□□□ -1.65
VPS53-212ENST00000572259 C20orf144Q9BQM9 153 aa4.72□□□□□ -1.65
VPS53-212ENST00000572259 CHST5Q9GZS9 411 aa4.72□□□□□ -1.65
VPS53-212ENST00000572259 MMP26Q9NRE1 261 aa4.72□□□□□ -1.65
VPS53-212ENST00000572259 FBXO7Q9Y3I1 522 aa4.72□□□□□ -1.65
VPS53-212ENST00000572259 DSCAML1Q8TD84 2053 aa4.72□□□□□ -1.65
VPS53-212ENST00000572259 FAM240AA0A1B0GVK7 77 aa4.71□□□□□ -1.66
VPS53-212ENST00000572259 PQLC2LA1A4F0 135 aa4.71□□□□□ -1.66
VPS53-212ENST00000572259 A6NIN4 97 aa4.71□□□□□ -1.66
VPS53-212ENST00000572259 RFPL4AA6NLU0 287 aa4.71□□□□□ -1.66
VPS53-212ENST00000572259 OR4C45A6NMZ5 311 aa4.71□□□□□ -1.66
VPS53-212ENST00000572259 ZNF729A6NN14 1252 aaPredicted RBP4.71□□□□□ -1.66
VPS53-212ENST00000572259 RFPL4AL1F8VTS6 287 aa4.71□□□□□ -1.66
VPS53-212ENST00000572259 H3BSH0 61 aa4.71□□□□□ -1.66
VPS53-212ENST00000572259 K7EQD1 137 aa4.71□□□□□ -1.66
VPS53-212ENST00000572259 MYL12BO14950 172 aa4.71□□□□□ -1.66
VPS53-212ENST00000572259 PGA5P0DJD9 388 aa4.71□□□□□ -1.66
VPS53-212ENST00000572259 PIPP12273 146 aaPredicted RBP4.71□□□□□ -1.66
VPS53-212ENST00000572259 ATF1P18846 271 aa4.71□□□□□ -1.66
VPS53-212ENST00000572259 GALR1P47211 349 aa4.71□□□□□ -1.66
VPS53-212ENST00000572259 CAV3P56539 151 aa4.71□□□□□ -1.66
VPS53-212ENST00000572259 SMCO1Q147U7 214 aa4.71□□□□□ -1.66
VPS53-212ENST00000572259 HLA-DRB5Q30154 266 aa4.71□□□□□ -1.66
VPS53-212ENST00000572259 C12orf54Q6X4T0 127 aa4.71□□□□□ -1.66
VPS53-212ENST00000572259 Q6ZN92 141 aa4.71□□□□□ -1.66
VPS53-212ENST00000572259 ACP7Q6ZNF0 438 aa4.71□□□□□ -1.66
VPS53-212ENST00000572259 WDR86Q86TI4 376 aa4.71□□□□□ -1.66
VPS53-212ENST00000572259 RDH10Q8IZV5 341 aa4.71□□□□□ -1.66
VPS53-212ENST00000572259 ZNF491Q8N8L2 437 aa4.71□□□□□ -1.66
VPS53-212ENST00000572259 BPIFB6Q8NFQ5 453 aa4.71□□□□□ -1.66
VPS53-212ENST00000572259 OR52N1Q8NH53 320 aa4.71□□□□□ -1.66
VPS53-212ENST00000572259 OR10J5Q8NHC4 309 aa4.71□□□□□ -1.66
VPS53-212ENST00000572259 NPRL2Q8WTW4 380 aa4.71□□□□□ -1.66
VPS53-212ENST00000572259 H1FXQ92522 213 aaKnown RBP4.71□□□□□ -1.66
VPS53-212ENST00000572259 TMEM230Q96A57 120 aa4.71□□□□□ -1.66
VPS53-212ENST00000572259 S100A13Q99584 98 aa4.71□□□□□ -1.66
VPS53-212ENST00000572259 PHB2Q99623 299 aa4.71□□□□□ -1.66
VPS53-212ENST00000572259 COMMD9Q9P000 198 aa4.71□□□□□ -1.66
VPS53-212ENST00000572259 CKLFQ9UBR5 152 aa4.71□□□□□ -1.66
VPS53-212ENST00000572259 TPRKBQ9Y3C4 175 aa4.71□□□□□ -1.66
VPS53-212ENST00000572259 IGHV3OR16-12A0A075B7B8 117 aa4.7□□□□□ -1.66
VPS53-212ENST00000572259 SMIM9A6NGZ8 99 aa4.7□□□□□ -1.66
VPS53-212ENST00000572259 PRAC2D3DTV9 90 aa4.7□□□□□ -1.66
VPS53-212ENST00000572259 PTTG1O95997 202 aa4.7□□□□□ -1.66
VPS53-212ENST00000572259 IFNA21P01568 189 aa4.7□□□□□ -1.66
VPS53-212ENST00000572259 HCKP08631 526 aa4.7□□□□□ -1.66
VPS53-212ENST00000572259 PSG2P11465 335 aa4.7□□□□□ -1.66
VPS53-212ENST00000572259 GTF2F2P13984 249 aa4.7□□□□□ -1.66
VPS53-212ENST00000572259 RAB3AP20336 220 aa4.7□□□□□ -1.66
VPS53-212ENST00000572259 SULT1A1P50225 295 aa4.7□□□□□ -1.66
VPS53-212ENST00000572259 SULT1A2P50226 295 aa4.7□□□□□ -1.66
VPS53-212ENST00000572259 PAX9P55771 341 aa4.7□□□□□ -1.66
VPS53-212ENST00000572259 FGF12P61328 243 aa4.7□□□□□ -1.66
VPS53-212ENST00000572259 PPP3R1P63098 170 aa4.7□□□□□ -1.66
VPS53-212ENST00000572259 OR2F1Q13607 317 aa4.7□□□□□ -1.66
VPS53-212ENST00000572259 CDK5R1Q15078 307 aa4.7□□□□□ -1.66
VPS53-212ENST00000572259 TMEM30BQ3MIR4 351 aa4.7□□□□□ -1.66
VPS53-212ENST00000572259 KLF17Q5JT82 389 aaPredicted RBP4.7□□□□□ -1.66
VPS53-212ENST00000572259 SLC25A26Q70HW3 274 aa4.7□□□□□ -1.66
VPS53-212ENST00000572259 ANGPTL5Q86XS5 388 aa4.7□□□□□ -1.66
VPS53-212ENST00000572259 ADAT3Q96EY9 351 aaPredicted RBP4.7□□□□□ -1.66
VPS53-212ENST00000572259 ZNF486Q96H40 463 aaPredicted RBP4.7□□□□□ -1.66
VPS53-212ENST00000572259 GPER1Q99527 375 aa4.7□□□□□ -1.66
VPS53-212ENST00000572259 MND1Q9BWT6 205 aa4.7□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms