RNA–Protein interactions for RNA: ENST00000570359.1

VPS53-206, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 2,781 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-206ENST00000570359 C11orf94C9JXX5 98 aa8.07□□□□□ -1.12
VPS53-206ENST00000570359 H0YJW9 148 aa8.07□□□□□ -1.12
VPS53-206ENST00000570359 FOXH1O75593 365 aa8.07□□□□□ -1.12
VPS53-206ENST00000570359 HOXA5P20719 270 aa8.07□□□□□ -1.12
VPS53-206ENST00000570359 UQCRFS1P47985 274 aa8.07□□□□□ -1.12
VPS53-206ENST00000570359 SSX2Q16385 188 aa8.07□□□□□ -1.12
VPS53-206ENST00000570359 TMEM14BQ9NUH8 114 aa8.07□□□□□ -1.12
VPS53-206ENST00000570359 CELSR1Q9NYQ6 3014 aa8.06□□□□□ -1.12
VPS53-206ENST00000570359 UPK2O00526 184 aa8.06□□□□□ -1.12
VPS53-206ENST00000570359 NDUFS7O75251 213 aa8.06□□□□□ -1.12
VPS53-206ENST00000570359 KBTBD11O94819 623 aa8.06□□□□□ -1.12
VPS53-206ENST00000570359 IL6RP08887 468 aaPredicted RBP8.06□□□□□ -1.12
VPS53-206ENST00000570359 PAX1P15863 534 aa8.06□□□□□ -1.12
VPS53-206ENST00000570359 HIST1H1BP16401 226 aaKnown RBP8.06□□□□□ -1.12
VPS53-206ENST00000570359 CDKN1AP38936 164 aa8.06□□□□□ -1.12
VPS53-206ENST00000570359 CDX1P47902 265 aaPredicted RBP8.06□□□□□ -1.12
VPS53-206ENST00000570359 ZNF672Q499Z4 452 aaPredicted RBP8.06□□□□□ -1.12
VPS53-206ENST00000570359 PDZD11Q5EBL8 140 aa8.06□□□□□ -1.12
VPS53-206ENST00000570359 HCP5Q6MZN7 132 aa8.06□□□□□ -1.12
VPS53-206ENST00000570359 STPG3Q8N7X2 389 aa8.06□□□□□ -1.12
VPS53-206ENST00000570359 ADTRPQ96IZ2 230 aa8.06□□□□□ -1.12
VPS53-206ENST00000570359 NEU1Q99519 415 aa8.06□□□□□ -1.12
VPS53-206ENST00000570359 PARLQ9H300 379 aa8.06□□□□□ -1.12
VPS53-206ENST00000570359 SEPSECSQ9HD40 501 aaKnown RBP8.06□□□□□ -1.12
VPS53-206ENST00000570359 A0A1B0GW64 132 aa8.06□□□□□ -1.12
VPS53-206ENST00000570359 IGHV1-8P0DP01 117 aa8.06□□□□□ -1.12
VPS53-206ENST00000570359 UCNP55089 124 aa8.06□□□□□ -1.12
VPS53-206ENST00000570359 Q8N7P7 452 aa8.06□□□□□ -1.12
VPS53-206ENST00000570359 ZNF436-AS1Q8NC38 126 aaPredicted RBP8.06□□□□□ -1.12
VPS53-206ENST00000570359 OR9G1Q8NH87 305 aa8.06□□□□□ -1.12
VPS53-206ENST00000570359 OR2T6Q8NHC8 308 aa8.06□□□□□ -1.12
VPS53-206ENST00000570359 CORO2AQ92828 525 aa8.06□□□□□ -1.12
VPS53-206ENST00000570359 FOXA2Q9Y261 457 aaPredicted RBP8.06□□□□□ -1.12
VPS53-206ENST00000570359 TIMM9Q9Y5J7 89 aa8.06□□□□□ -1.12
VPS53-206ENST00000570359 UTP20O75691 2785 aaKnown RBP8.06□□□□□ -1.12
VPS53-206ENST00000570359 TRAV1-1A0A0B4J248 108 aa8.05□□□□□ -1.12
VPS53-206ENST00000570359 PRB4P10163 310 aaPredicted RBP8.05□□□□□ -1.12
VPS53-206ENST00000570359 SSBP2P81877 361 aaPredicted RBP8.05□□□□□ -1.12
VPS53-206ENST00000570359 TEPPQ6URK8 271 aa8.05□□□□□ -1.12
VPS53-206ENST00000570359 SLC35E3Q7Z769 313 aa8.05□□□□□ -1.12
VPS53-206ENST00000570359 OR4P4Q8NGL7 312 aa8.05□□□□□ -1.12
VPS53-206ENST00000570359 PRDM13Q9H4Q3 707 aa8.05□□□□□ -1.12
VPS53-206ENST00000570359 PRNDQ9UKY0 176 aa8.05□□□□□ -1.12
VPS53-206ENST00000570359 MBP02144 154 aa8.05□□□□□ -1.12
VPS53-206ENST00000570359 SOD3P08294 240 aa8.05□□□□□ -1.12
VPS53-206ENST00000570359 OR10J4P0C629 311 aa8.05□□□□□ -1.12
VPS53-206ENST00000570359 ARF6P62330 175 aa8.05□□□□□ -1.12
VPS53-206ENST00000570359 RPL8P62917 257 aaKnown RBP8.05□□□□□ -1.12
VPS53-206ENST00000570359 MEF2CQ06413 473 aaPredicted RBP8.05□□□□□ -1.12
VPS53-206ENST00000570359 KLRD1Q13241 179 aa8.05□□□□□ -1.12
VPS53-206ENST00000570359 PYY3Q5JQD4 70 aa8.05□□□□□ -1.12
VPS53-206ENST00000570359 FAM78BQ5VT40 261 aa8.05□□□□□ -1.12
VPS53-206ENST00000570359 SP5Q6BEB4 398 aaPredicted RBP8.05□□□□□ -1.12
VPS53-206ENST00000570359 ZNF833PQ6ZTB9 187 aa8.05□□□□□ -1.12
VPS53-206ENST00000570359 PNKDQ8N490 385 aa8.05□□□□□ -1.12
VPS53-206ENST00000570359 C1orf159Q96HA4 380 aa8.05□□□□□ -1.12
VPS53-206ENST00000570359 HILPDAQ9Y5L2 63 aa8.05□□□□□ -1.12
VPS53-206ENST00000570359 CRYBG3Q68DQ2 2970 aa8.05□□□□□ -1.12
VPS53-206ENST00000570359 VPS13CQ709C8 3753 aa8.05□□□□□ -1.12
VPS53-206ENST00000570359 PPIAL4CA0A0B4J2A2 164 aa8.05□□□□□ -1.12
VPS53-206ENST00000570359 NDUFB4O95168 129 aa8.05□□□□□ -1.12
VPS53-206ENST00000570359 PPIAL4GP0DN37 164 aa8.05□□□□□ -1.12
VPS53-206ENST00000570359 OR10J1P30954 320 aa8.05□□□□□ -1.12
VPS53-206ENST00000570359 CHRNA7P36544 502 aa8.05□□□□□ -1.12
VPS53-206ENST00000570359 OPRK1P41145 380 aa8.05□□□□□ -1.12
VPS53-206ENST00000570359 PKIAP61925 76 aa8.05□□□□□ -1.12
VPS53-206ENST00000570359 MIR17HGQ75NE6 70 aa8.05□□□□□ -1.12
VPS53-206ENST00000570359 ST6GALNAC3Q8NDV1 305 aa8.05□□□□□ -1.12
VPS53-206ENST00000570359 NABP2Q9BQ15 211 aa8.05□□□□□ -1.12
VPS53-206ENST00000570359 ELOVL1Q9BW60 279 aa8.05□□□□□ -1.12
VPS53-206ENST00000570359 ZNF430Q9H8G1 570 aaPredicted RBP8.05□□□□□ -1.12
VPS53-206ENST00000570359 NPVFQ9HCQ7 196 aa8.05□□□□□ -1.12
VPS53-206ENST00000570359 CFAP46Q8IYW2 2715 aa8.04□□□□□ -1.12
VPS53-206ENST00000570359 S100A2P29034 98 aa8.04□□□□□ -1.12
VPS53-206ENST00000570359 PRCDQ00LT1 54 aa8.04□□□□□ -1.12
VPS53-206ENST00000570359 ELOBQ15370 118 aa8.04□□□□□ -1.12
VPS53-206ENST00000570359 TNXAQ16473 311 aa8.04□□□□□ -1.12
VPS53-206ENST00000570359 VWC2Q2TAL6 325 aa8.04□□□□□ -1.12
VPS53-206ENST00000570359 TMEM155Q4W5P6 130 aa8.04□□□□□ -1.12
VPS53-206ENST00000570359 MISP3Q96FF7 219 aa8.04□□□□□ -1.12
VPS53-206ENST00000570359 UBTD1Q9HAC8 227 aa8.04□□□□□ -1.12
VPS53-206ENST00000570359 CENPEQ02224 2701 aa8.04□□□□□ -1.12
VPS53-206ENST00000570359 FLNCQ14315 2725 aa8.04□□□□□ -1.12
VPS53-206ENST00000570359 MYO18BQ8IUG5 2567 aa8.04□□□□□ -1.12
VPS53-206ENST00000570359 IGKV1OR2-108A0A075B7D4 117 aa8.04□□□□□ -1.12
VPS53-206ENST00000570359 PRSS46E5RG02 174 aa8.04□□□□□ -1.12
VPS53-206ENST00000570359 PLGLAQ15195 96 aa8.04□□□□□ -1.12
VPS53-206ENST00000570359 SPNS3Q6ZMD2 512 aa8.04□□□□□ -1.12
VPS53-206ENST00000570359 C16orf82Q7Z2V1 217 aa8.04□□□□□ -1.12
VPS53-206ENST00000570359 OR52E5Q8NH55 327 aa8.04□□□□□ -1.12
VPS53-206ENST00000570359 PARD6GQ9BYG4 376 aaPredicted RBP8.04□□□□□ -1.12
VPS53-206ENST00000570359 TMEM133Q9H2Q1 129 aa8.04□□□□□ -1.12
VPS53-206ENST00000570359 IGHV2-26A0A0B4J1V2 119 aa8.03□□□□□ -1.12
VPS53-206ENST00000570359 SCO2A0A1W2PP80 73 aa8.03□□□□□ -1.12
VPS53-206ENST00000570359 OR7C2O60412 319 aa8.03□□□□□ -1.12
VPS53-206ENST00000570359 LY86O95711 162 aa8.03□□□□□ -1.12
VPS53-206ENST00000570359 NPPCP23582 126 aa8.03□□□□□ -1.12
VPS53-206ENST00000570359 DDTP30046 118 aa8.03□□□□□ -1.12
VPS53-206ENST00000570359 NDUFA6P56556 154 aa8.03□□□□□ -1.12
VPS53-206ENST00000570359 EFNB3Q15768 340 aa8.03□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms