RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 ICE1Q9Y2F5 2266 aa9.05□□□□□ -0.96
CLK3-226ENST00000569406 MYBPHQ13203 477 aa9.05□□□□□ -0.96
CLK3-226ENST00000569406 OR8B8Q15620 311 aa9.05□□□□□ -0.96
CLK3-226ENST00000569406 ANKRD37Q7Z713 158 aa9.05□□□□□ -0.96
CLK3-226ENST00000569406 MMD2Q8IY49 270 aa9.05□□□□□ -0.96
CLK3-226ENST00000569406 VGLL1Q99990 258 aa9.05□□□□□ -0.96
CLK3-226ENST00000569406 HDHD3Q9BSH5 251 aaPredicted RBP9.05□□□□□ -0.96
CLK3-226ENST00000569406 SFXN3Q9BWM7 321 aa9.05□□□□□ -0.96
CLK3-226ENST00000569406 ANXA10Q9UJ72 324 aa9.05□□□□□ -0.96
CLK3-226ENST00000569406 DNAJC13O75165 2243 aa9.05□□□□□ -0.96
CLK3-226ENST00000569406 A0A087WX48 190 aa9.04□□□□□ -0.96
CLK3-226ENST00000569406 PPIFP30405 207 aaKnown RBP9.04□□□□□ -0.96
CLK3-226ENST00000569406 GLRXP35754 106 aa9.04□□□□□ -0.96
CLK3-226ENST00000569406 DAP3P51398 398 aaKnown RBP9.04□□□□□ -0.96
CLK3-226ENST00000569406 PDCD1Q15116 288 aa9.04□□□□□ -0.96
CLK3-226ENST00000569406 Q6ZUT4 128 aa9.04□□□□□ -0.96
CLK3-226ENST00000569406 ODF3L1Q8IXM7 274 aa9.04□□□□□ -0.96
CLK3-226ENST00000569406 TTC9CQ8N5M4 171 aa9.04□□□□□ -0.96
CLK3-226ENST00000569406 TMEM116Q8NCL8 245 aa9.04□□□□□ -0.96
CLK3-226ENST00000569406 TXNIPQ9H3M7 391 aa9.04□□□□□ -0.96
CLK3-226ENST00000569406 SH2D7A6NKC9 451 aaPredicted RBP9.04□□□□□ -0.96
CLK3-226ENST00000569406 DUX1O43812 170 aa9.04□□□□□ -0.96
CLK3-226ENST00000569406 DEFA4P12838 97 aa9.04□□□□□ -0.96
CLK3-226ENST00000569406 GNB1P62873 340 aa9.04□□□□□ -0.96
CLK3-226ENST00000569406 QRFPP83859 136 aa9.04□□□□□ -0.96
CLK3-226ENST00000569406 GNB1LQ9BYB4 327 aa9.04□□□□□ -0.96
CLK3-226ENST00000569406 ENY2Q9NPA8 101 aa9.04□□□□□ -0.96
CLK3-226ENST00000569406 FAM206AQ9NX38 181 aa9.04□□□□□ -0.96
CLK3-226ENST00000569406 A0A1W2PNR3 127 aa9.04□□□□□ -0.96
CLK3-226ENST00000569406 C2orf70A6NJV1 201 aa9.04□□□□□ -0.96
CLK3-226ENST00000569406 CHEK1O14757 476 aa9.04□□□□□ -0.96
CLK3-226ENST00000569406 ECI1P42126 302 aa9.04□□□□□ -0.96
CLK3-226ENST00000569406 GUSBP11Q6P575 273 aa9.04□□□□□ -0.96
CLK3-226ENST00000569406 GCM1Q9NP62 436 aa9.04□□□□□ -0.96
CLK3-226ENST00000569406 R4GMQ9 66 aa9.04□□□□□ -0.96
CLK3-226ENST00000569406 IGKV1D-33P01593 117 aa9.03□□□□□ -0.96
CLK3-226ENST00000569406 IGKV1-33P01594 117 aa9.03□□□□□ -0.96
CLK3-226ENST00000569406 FCGR2AP12318 317 aa9.03□□□□□ -0.96
CLK3-226ENST00000569406 OR3A4PP47883 348 aa9.03□□□□□ -0.96
CLK3-226ENST00000569406 ATP5G3P48201 142 aa9.03□□□□□ -0.96
CLK3-226ENST00000569406 OR10G9Q8NGN4 311 aa9.03□□□□□ -0.96
CLK3-226ENST00000569406 NCOA6Q14686 2063 aaPredicted RBP9.03□□□□□ -0.96
CLK3-226ENST00000569406 A0A1B0GWB2 263 aa9.03□□□□□ -0.96
CLK3-226ENST00000569406 TMEM14DPA8MWL7 114 aa9.03□□□□□ -0.96
CLK3-226ENST00000569406 CT45A10P0DMU9 189 aa9.03□□□□□ -0.96
CLK3-226ENST00000569406 PSG2P11465 335 aa9.03□□□□□ -0.96
CLK3-226ENST00000569406 SUMO3P55854 103 aaPredicted RBP9.03□□□□□ -0.96
CLK3-226ENST00000569406 LGALS4P56470 323 aa9.03□□□□□ -0.96
CLK3-226ENST00000569406 C3AR1Q16581 482 aa9.03□□□□□ -0.96
CLK3-226ENST00000569406 RSPO4Q2I0M5 234 aaPredicted RBP9.03□□□□□ -0.96
CLK3-226ENST00000569406 TIMM23BQ5SRD1 257 aa9.03□□□□□ -0.96
CLK3-226ENST00000569406 ZNF436-AS1Q8NC38 126 aaPredicted RBP9.03□□□□□ -0.96
CLK3-226ENST00000569406 KCNK17Q96T54 332 aa9.03□□□□□ -0.96
CLK3-226ENST00000569406 GPHA2Q96T91 129 aa9.03□□□□□ -0.96
CLK3-226ENST00000569406 TM2D2Q9BX73 214 aa9.03□□□□□ -0.96
CLK3-226ENST00000569406 SHANK1Q9Y566 2161 aa9.03□□□□□ -0.96
CLK3-226ENST00000569406 NCKAP5O14513 1909 aa9.03□□□□□ -0.96
CLK3-226ENST00000569406 UBE2L5PA0A1B0GUS4 154 aa9.03□□□□□ -0.96
CLK3-226ENST00000569406 H3BMG7 143 aa9.03□□□□□ -0.96
CLK3-226ENST00000569406 OR7C1O76099 320 aaPredicted RBP9.03□□□□□ -0.96
CLK3-226ENST00000569406 KIR2DL2P43627 348 aaPredicted RBP9.03□□□□□ -0.96
CLK3-226ENST00000569406 ZNF121P58317 390 aaPredicted RBP9.03□□□□□ -0.96
CLK3-226ENST00000569406 C2orf91Q6ZV80 131 aa9.03□□□□□ -0.96
CLK3-226ENST00000569406 WDR5BQ86VZ2 330 aa9.03□□□□□ -0.96
CLK3-226ENST00000569406 OCC1Q8TAD7 63 aa9.03□□□□□ -0.96
CLK3-226ENST00000569406 NAT6Q93015 286 aa9.03□□□□□ -0.96
CLK3-226ENST00000569406 OR10A2Q9H208 303 aa9.03□□□□□ -0.96
CLK3-226ENST00000569406 IGHV5-10-1A0A0J9YXX1 117 aa9.02□□□□□ -0.96
CLK3-226ENST00000569406 HSPB6O14558 160 aa9.02□□□□□ -0.96
CLK3-226ENST00000569406 APOMO95445 188 aa9.02□□□□□ -0.96
CLK3-226ENST00000569406 HLA-DRB1P01911 266 aa9.02□□□□□ -0.96
CLK3-226ENST00000569406 APCSP02743 223 aa9.02□□□□□ -0.96
CLK3-226ENST00000569406 PBOV1Q9GZY1 135 aa9.02□□□□□ -0.96
CLK3-226ENST00000569406 LIME1Q9H400 295 aa9.02□□□□□ -0.96
CLK3-226ENST00000569406 MT-ND6P03923 174 aa9.02□□□□□ -0.97
CLK3-226ENST00000569406 IAPPP10997 89 aa9.02□□□□□ -0.97
CLK3-226ENST00000569406 KIR2DS4P43632 304 aa9.02□□□□□ -0.97
CLK3-226ENST00000569406 SERF2P84101 59 aa9.02□□□□□ -0.97
CLK3-226ENST00000569406 LINC00173Q6ZV60 143 aa9.02□□□□□ -0.97
CLK3-226ENST00000569406 C8orf46Q8TAG6 207 aa9.02□□□□□ -0.97
CLK3-226ENST00000569406 SAP25Q8TEE9 199 aa9.02□□□□□ -0.97
CLK3-226ENST00000569406 RABAC1Q9UI14 185 aa9.02□□□□□ -0.97
CLK3-226ENST00000569406 HEATR1Q9H583 2144 aaKnown RBP9.02□□□□□ -0.97
CLK3-226ENST00000569406 TRBV9A0A0B4J1U6 114 aa9.02□□□□□ -0.97
CLK3-226ENST00000569406 A0A1W2PRE2 83 aa9.02□□□□□ -0.97
CLK3-226ENST00000569406 RER1O15258 196 aa9.02□□□□□ -0.97
CLK3-226ENST00000569406 SRSF1Q07955 248 aaKnown RBP eCLIP9.02□□□□□ -0.97
CLK3-226ENST00000569406 COL25A1Q9BXS0 654 aaPredicted RBP9.02□□□□□ -0.97
CLK3-226ENST00000569406 ZNF442Q9H7R0 627 aa9.02□□□□□ -0.97
CLK3-226ENST00000569406 F8W1H4 67 aa9.01□□□□□ -0.97
CLK3-226ENST00000569406 RBM11P57052 281 aaKnown RBP9.01□□□□□ -0.97
CLK3-226ENST00000569406 AMTNQ6UX39 209 aa9.01□□□□□ -0.97
CLK3-226ENST00000569406 DTX1Q86Y01 620 aa9.01□□□□□ -0.97
CLK3-226ENST00000569406 OR10G7Q8NGN6 311 aa9.01□□□□□ -0.97
CLK3-226ENST00000569406 CDIP1Q9H305 208 aa9.01□□□□□ -0.97
CLK3-226ENST00000569406 ANAPC10Q9UM13 185 aa9.01□□□□□ -0.97
CLK3-226ENST00000569406 SYS1-DBNDD2H3BUS1 97 aa9.01□□□□□ -0.97
CLK3-226ENST00000569406 G6PCP35575 357 aa9.01□□□□□ -0.97
CLK3-226ENST00000569406 C6orf201Q7Z4U5 140 aa9.01□□□□□ -0.97
CLK3-226ENST00000569406 C11orf1Q9H5F2 150 aa9.01□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms