RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 SFT2D2O95562 160 aa7.04□□□□□ -1.28
VPS35-206ENST00000565228 IGHV3-48P01763 117 aa7.04□□□□□ -1.28
VPS35-206ENST00000565228 SLC6A1P30531 599 aa7.04□□□□□ -1.28
VPS35-206ENST00000565228 ECI1P42126 302 aa7.04□□□□□ -1.28
VPS35-206ENST00000565228 UBE2MP61081 183 aaKnown RBP7.04□□□□□ -1.28
VPS35-206ENST00000565228 HSPE1P61604 102 aaKnown RBP7.04□□□□□ -1.28
VPS35-206ENST00000565228 PRCDQ00LT1 54 aa7.04□□□□□ -1.28
VPS35-206ENST00000565228 EXOSC2Q13868 293 aaKnown RBP7.04□□□□□ -1.28
VPS35-206ENST00000565228 KLF5Q13887 457 aaPredicted RBP7.04□□□□□ -1.28
VPS35-206ENST00000565228 TRIQKQ629K1 86 aa7.04□□□□□ -1.28
VPS35-206ENST00000565228 LINC00299Q6ZSB3 139 aa7.04□□□□□ -1.28
VPS35-206ENST00000565228 ZNF429Q86V71 674 aa7.04□□□□□ -1.28
VPS35-206ENST00000565228 OR52B4Q8NGK2 314 aa7.04□□□□□ -1.28
VPS35-206ENST00000565228 RBPMSQ93062 196 aaKnown RBP7.04□□□□□ -1.28
VPS35-206ENST00000565228 COMMD5Q9GZQ3 224 aa7.04□□□□□ -1.28
VPS35-206ENST00000565228 CACNG5Q9UF02 275 aa7.04□□□□□ -1.28
VPS35-206ENST00000565228 PRNDQ9UKY0 176 aa7.04□□□□□ -1.28
VPS35-206ENST00000565228 F11RQ9Y624 299 aaKnown RBP7.04□□□□□ -1.28
VPS35-206ENST00000565228 HUWE1Q7Z6Z7 4374 aaKnown RBP7.04□□□□□ -1.28
VPS35-206ENST00000565228 C13orf42A0A1B0GVH6 325 aa7.03□□□□□ -1.28
VPS35-206ENST00000565228 I3L2K1 104 aa7.03□□□□□ -1.28
VPS35-206ENST00000565228 LYRM1O43325 122 aa7.03□□□□□ -1.28
VPS35-206ENST00000565228 PITX3O75364 302 aa7.03□□□□□ -1.28
VPS35-206ENST00000565228 RNASE2P10153 161 aaKnown RBP7.03□□□□□ -1.28
VPS35-206ENST00000565228 AKR1C2P52895 323 aa7.03□□□□□ -1.28
VPS35-206ENST00000565228 AP3S2P59780 193 aa7.03□□□□□ -1.28
VPS35-206ENST00000565228 ATP5G2Q06055 141 aa7.03□□□□□ -1.28
VPS35-206ENST00000565228 EGFEM1PQ0D2K5 195 aa7.03□□□□□ -1.28
VPS35-206ENST00000565228 BSXQ3C1V8 233 aa7.03□□□□□ -1.28
VPS35-206ENST00000565228 TMEM128Q5BJH2 165 aa7.03□□□□□ -1.28
VPS35-206ENST00000565228 SGPP2Q8IWX5 399 aa7.03□□□□□ -1.28
VPS35-206ENST00000565228 NECAP1Q8NC96 275 aa7.03□□□□□ -1.28
VPS35-206ENST00000565228 OR5B3Q8NH48 314 aa7.03□□□□□ -1.28
VPS35-206ENST00000565228 OR4A16Q8NH70 328 aa7.03□□□□□ -1.28
VPS35-206ENST00000565228 ZNF502Q8TBZ5 544 aa7.03□□□□□ -1.28
VPS35-206ENST00000565228 LSM10Q969L4 123 aaKnown RBP7.03□□□□□ -1.28
VPS35-206ENST00000565228 USMG5Q96IX5 58 aa7.03□□□□□ -1.28
VPS35-206ENST00000565228 SLC25A21Q9BQT8 299 aaPredicted RBP7.03□□□□□ -1.28
VPS35-206ENST00000565228 SRSF8Q9BRL6 282 aaKnown RBP7.03□□□□□ -1.28
VPS35-206ENST00000565228 AIFM2Q9BRQ8 373 aa7.03□□□□□ -1.28
VPS35-206ENST00000565228 FNDC4Q9H6D8 234 aaPredicted RBP7.03□□□□□ -1.28
VPS35-206ENST00000565228 BATF3Q9NR55 127 aa7.03□□□□□ -1.28
VPS35-206ENST00000565228 AURKAIP1Q9NWT8 199 aaPredicted RBP7.03□□□□□ -1.28
VPS35-206ENST00000565228 PEF1Q9UBV8 284 aaKnown RBP7.03□□□□□ -1.28
VPS35-206ENST00000565228 SELENOKQ9Y6D0 94 aa7.03□□□□□ -1.28
VPS35-206ENST00000565228 C9orf170A2RU37 121 aa7.02□□□□□ -1.29
VPS35-206ENST00000565228 NAP1L6A6NFF2 107 aa7.02□□□□□ -1.29
VPS35-206ENST00000565228 FAM223BA6NKX1 122 aa7.02□□□□□ -1.29
VPS35-206ENST00000565228 INS-IGF2F8WCM5 200 aa7.02□□□□□ -1.29
VPS35-206ENST00000565228 K7EIL1 84 aa7.02□□□□□ -1.29
VPS35-206ENST00000565228 ADAP1O75689 374 aa7.02□□□□□ -1.29
VPS35-206ENST00000565228 SNAPC5O75971 98 aa7.02□□□□□ -1.29
VPS35-206ENST00000565228 OR2C1O95371 312 aa7.02□□□□□ -1.29
VPS35-206ENST00000565228 CSN3P07498 182 aa7.02□□□□□ -1.29
VPS35-206ENST00000565228 SPNP16150 400 aa7.02□□□□□ -1.29
VPS35-206ENST00000565228 S100GP29377 79 aa7.02□□□□□ -1.29
VPS35-206ENST00000565228 ADMP35318 185 aa7.02□□□□□ -1.29
VPS35-206ENST00000565228 FAUP35544 74 aaKnown RBP7.02□□□□□ -1.29
VPS35-206ENST00000565228 RBMS2Q15434 407 aaKnown RBP7.02□□□□□ -1.29
VPS35-206ENST00000565228 ACSM6Q6P461 480 aa7.02□□□□□ -1.29
VPS35-206ENST00000565228 CLEC19AQ6UXS0 136 aa7.02□□□□□ -1.29
VPS35-206ENST00000565228 UNQ9165/PRO28630Q6UXU0 137 aa7.02□□□□□ -1.29
VPS35-206ENST00000565228 FAM223AQ8IWN6 122 aa7.02□□□□□ -1.29
VPS35-206ENST00000565228 CENPSQ8N2Z9 138 aa7.02□□□□□ -1.29
VPS35-206ENST00000565228 LRTM2Q8N967 370 aa7.02□□□□□ -1.29
VPS35-206ENST00000565228 SCARB1Q8WTV0 552 aa7.02□□□□□ -1.29
VPS35-206ENST00000565228 DEDD2Q8WXF8 326 aa7.02□□□□□ -1.29
VPS35-206ENST00000565228 IL22RA2Q969J5 263 aa7.02□□□□□ -1.29
VPS35-206ENST00000565228 RCC1LQ96I51 464 aaKnown RBP7.02□□□□□ -1.29
VPS35-206ENST00000565228 CHRDL1Q9BU40 450 aa7.02□□□□□ -1.29
VPS35-206ENST00000565228 CCDC32Q9BV29 185 aa7.02□□□□□ -1.29
VPS35-206ENST00000565228 A0A0B4J2A0 478 aa7.01□□□□□ -1.29
VPS35-206ENST00000565228 IGHV3-35A0A0C4DH35 117 aa7.01□□□□□ -1.29
VPS35-206ENST00000565228 IZUMO1RA6ND01 250 aa7.01□□□□□ -1.29
VPS35-206ENST00000565228 SEC14L6B5MCN3 397 aa7.01□□□□□ -1.29
VPS35-206ENST00000565228 OVOL1O14753 267 aa7.01□□□□□ -1.29
VPS35-206ENST00000565228 B3GALNT1O75752 331 aa7.01□□□□□ -1.29
VPS35-206ENST00000565228 UPK1BO75841 260 aa7.01□□□□□ -1.29
VPS35-206ENST00000565228 TCRBP04435 133 aa7.01□□□□□ -1.29
VPS35-206ENST00000565228 OR4E1P0C645 316 aa7.01□□□□□ -1.29
VPS35-206ENST00000565228 OR8U8P0C7N1 319 aa7.01□□□□□ -1.29
VPS35-206ENST00000565228 MECP2P51608 486 aaKnown RBP7.01□□□□□ -1.29
VPS35-206ENST00000565228 SYNJ2BPP57105 145 aa7.01□□□□□ -1.29
VPS35-206ENST00000565228 DHRS2Q13268 280 aa7.01□□□□□ -1.29
VPS35-206ENST00000565228 SLC25A24Q6NUK1 477 aa7.01□□□□□ -1.29
VPS35-206ENST00000565228 ZNF114Q8NC26 417 aa7.01□□□□□ -1.29
VPS35-206ENST00000565228 TSC22D3Q99576 134 aa7.01□□□□□ -1.29
VPS35-206ENST00000565228 SEC22CQ9BRL7 303 aa7.01□□□□□ -1.29
VPS35-206ENST00000565228 C20orf85Q9H1P6 137 aa7.01□□□□□ -1.29
VPS35-206ENST00000565228 RANGRFQ9HD47 186 aaPredicted RBP7.01□□□□□ -1.29
VPS35-206ENST00000565228 SHPKQ9UHJ6 478 aa7.01□□□□□ -1.29
VPS35-206ENST00000565228 TRAV6A0A075B6T7 132 aa7□□□□□ -1.29
VPS35-206ENST00000565228 A0A0G2JLM5 398 aa7□□□□□ -1.29
VPS35-206ENST00000565228 MT-CO2P00403 227 aa7□□□□□ -1.29
VPS35-206ENST00000565228 CLEC3BP05452 202 aa7□□□□□ -1.29
VPS35-206ENST00000565228 HOXB5P09067 269 aa7□□□□□ -1.29
VPS35-206ENST00000565228 VAMP1P23763 118 aa7□□□□□ -1.29
VPS35-206ENST00000565228 GPR183P32249 361 aa7□□□□□ -1.29
VPS35-206ENST00000565228 ASAH1Q13510 395 aa7□□□□□ -1.29
VPS35-206ENST00000565228 ZNF846Q147U1 533 aa7□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms