RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 GPHB5Q86YW7 130 aa10.23□□□□□ -0.77
CLK3-213ENST00000563842 FAM219AQ8IW50 185 aa10.23□□□□□ -0.77
CLK3-213ENST00000563842 SGPP2Q8IWX5 399 aa10.23□□□□□ -0.77
CLK3-213ENST00000563842 ATP6V0BQ99437 205 aa10.23□□□□□ -0.77
CLK3-213ENST00000563842 B9D2Q9BPU9 175 aa10.23□□□□□ -0.77
CLK3-213ENST00000563842 RTBDNQ9BSG5 229 aaPredicted RBP10.23□□□□□ -0.77
CLK3-213ENST00000563842 TMEM222Q9H0R3 208 aa10.23□□□□□ -0.77
CLK3-213ENST00000563842 C5orf66Q9H5L9 145 aa10.23□□□□□ -0.77
CLK3-213ENST00000563842 NAA60Q9H7X0 242 aa10.23□□□□□ -0.77
CLK3-213ENST00000563842 PIGBOS1A0A0B4J2F0 54 aa10.22□□□□□ -0.77
CLK3-213ENST00000563842 CRYM-AS1A6NIL9 109 aa10.22□□□□□ -0.77
CLK3-213ENST00000563842 PPP5D1E7EU14 171 aa10.22□□□□□ -0.77
CLK3-213ENST00000563842 LGALS9O00182 355 aa10.22□□□□□ -0.77
CLK3-213ENST00000563842 CDS2O95674 445 aa10.22□□□□□ -0.77
CLK3-213ENST00000563842 IGKV1-5P01602 117 aa10.22□□□□□ -0.77
CLK3-213ENST00000563842 IGHV3-23P01764 117 aa10.22□□□□□ -0.77
CLK3-213ENST00000563842 OR5AC1P0C628 307 aa10.22□□□□□ -0.77
CLK3-213ENST00000563842 GP9P14770 177 aa10.22□□□□□ -0.77
CLK3-213ENST00000563842 ETV6P41212 452 aa10.22□□□□□ -0.77
CLK3-213ENST00000563842 CD69Q07108 199 aa10.22□□□□□ -0.77
CLK3-213ENST00000563842 OR2K2Q8NGT1 345 aa10.22□□□□□ -0.77
CLK3-213ENST00000563842 OR1P1Q8NH06 330 aa10.22□□□□□ -0.77
CLK3-213ENST00000563842 CCDC140Q96MF4 163 aa10.22□□□□□ -0.77
CLK3-213ENST00000563842 PLEKHA3Q9HB20 300 aa10.22□□□□□ -0.77
CLK3-213ENST00000563842 GAR1Q9NY12 217 aaKnown RBP10.22□□□□□ -0.77
CLK3-213ENST00000563842 LSM4Q9Y4Z0 139 aaKnown RBP10.22□□□□□ -0.77
CLK3-213ENST00000563842 SMAD5-AS1Q9Y6J3 95 aa10.22□□□□□ -0.77
CLK3-213ENST00000563842 V9GYH0 126 aa10.22□□□□□ -0.77
CLK3-213ENST00000563842 MFSD2BA6NFX1 497 aa10.21□□□□□ -0.77
CLK3-213ENST00000563842 DBX1A6NMT0 343 aa10.21□□□□□ -0.77
CLK3-213ENST00000563842 OR2C1O95371 312 aa10.21□□□□□ -0.77
CLK3-213ENST00000563842 IFNA17P01571 189 aa10.21□□□□□ -0.77
CLK3-213ENST00000563842 CLEC3BP05452 202 aa10.21□□□□□ -0.77
CLK3-213ENST00000563842 CSN3P07498 182 aa10.21□□□□□ -0.77
CLK3-213ENST00000563842 LCN12Q6JVE5 192 aa10.21□□□□□ -0.77
CLK3-213ENST00000563842 PLET1Q6UQ28 207 aa10.21□□□□□ -0.77
CLK3-213ENST00000563842 IL34Q6ZMJ4 242 aa10.21□□□□□ -0.77
CLK3-213ENST00000563842 OR2C3Q8N628 320 aa10.21□□□□□ -0.77
CLK3-213ENST00000563842 SLC35G3Q8N808 338 aa10.21□□□□□ -0.77
CLK3-213ENST00000563842 ZNF502Q8TBZ5 544 aa10.21□□□□□ -0.77
CLK3-213ENST00000563842 GLYATL2Q8WU03 294 aa10.21□□□□□ -0.77
CLK3-213ENST00000563842 RBPMSQ93062 196 aaKnown RBP10.21□□□□□ -0.77
CLK3-213ENST00000563842 PALMDQ9NP74 551 aa10.21□□□□□ -0.77
CLK3-213ENST00000563842 CACFD1Q9UGQ2 172 aa10.21□□□□□ -0.77
CLK3-213ENST00000563842 DMRT1Q9Y5R6 373 aa10.21□□□□□ -0.77
CLK3-213ENST00000563842 S4R3C0 116 aa10.21□□□□□ -0.77
CLK3-213ENST00000563842 P0C879 139 aa10.2□□□□□ -0.78
CLK3-213ENST00000563842 ANXA3P12429 323 aa10.2□□□□□ -0.78
CLK3-213ENST00000563842 SNCAP37840 140 aa10.2□□□□□ -0.78
CLK3-213ENST00000563842 INPP1P49441 399 aa10.2□□□□□ -0.78
CLK3-213ENST00000563842 SUB1P53999 127 aaKnown RBP eCLIP10.2□□□□□ -0.78
CLK3-213ENST00000563842 KLF9Q13886 244 aaPredicted RBP10.2□□□□□ -0.78
CLK3-213ENST00000563842 ZNF79Q15937 498 aa10.2□□□□□ -0.78
CLK3-213ENST00000563842 SPSB3Q6PJ21 355 aa10.2□□□□□ -0.78
CLK3-213ENST00000563842 ZNF114Q8NC26 417 aa10.2□□□□□ -0.78
CLK3-213ENST00000563842 DYNLRB2Q8TF09 96 aa10.2□□□□□ -0.78
CLK3-213ENST00000563842 IL22RA2Q969J5 263 aa10.2□□□□□ -0.78
CLK3-213ENST00000563842 TRIM63Q969Q1 353 aa10.2□□□□□ -0.78
CLK3-213ENST00000563842 GALNT14Q96FL9 552 aa10.2□□□□□ -0.78
CLK3-213ENST00000563842 BSCL2Q96G97 398 aaPredicted RBP10.2□□□□□ -0.78
CLK3-213ENST00000563842 SLC25A21Q9BQT8 299 aaPredicted RBP10.2□□□□□ -0.78
CLK3-213ENST00000563842 ENY2Q9NPA8 101 aa10.2□□□□□ -0.78
CLK3-213ENST00000563842 C21orf62Q9NYP8 219 aa10.2□□□□□ -0.78
CLK3-213ENST00000563842 A0A0B4J293 547 aa10.19□□□□□ -0.78
CLK3-213ENST00000563842 ZNF320A2RRD8 509 aa10.19□□□□□ -0.78
CLK3-213ENST00000563842 INS-IGF2F8WCM5 200 aa10.19□□□□□ -0.78
CLK3-213ENST00000563842 ST8SIA3O43173 380 aa10.19□□□□□ -0.78
CLK3-213ENST00000563842 HLA-AP01891 365 aaKnown RBP10.19□□□□□ -0.78
CLK3-213ENST00000563842 NHLRC4P0CG21 123 aaPredicted RBP10.19□□□□□ -0.78
CLK3-213ENST00000563842 GPR183P32249 361 aa10.19□□□□□ -0.78
CLK3-213ENST00000563842 ZNF57Q68EA5 555 aaPredicted RBP10.19□□□□□ -0.78
CLK3-213ENST00000563842 SELENOHQ8IZQ5 122 aaKnown RBP10.19□□□□□ -0.78
CLK3-213ENST00000563842 CTNNBIP1Q9NSA3 81 aaPredicted RBP10.19□□□□□ -0.78
CLK3-213ENST00000563842 TECRQ9NZ01 308 aaKnown RBP10.19□□□□□ -0.78
CLK3-213ENST00000563842 TMEM56-RWDD3S4R434 201 aa10.19□□□□□ -0.78
CLK3-213ENST00000563842 C2orf70A6NJV1 201 aa10.18□□□□□ -0.78
CLK3-213ENST00000563842 CORTO00230 105 aa10.18□□□□□ -0.78
CLK3-213ENST00000563842 TGOLN2O43493 480 aa10.18□□□□□ -0.78
CLK3-213ENST00000563842 AKR1C4P17516 323 aa10.18□□□□□ -0.78
CLK3-213ENST00000563842 HOXA1P49639 335 aaPredicted RBP10.18□□□□□ -0.78
CLK3-213ENST00000563842 MFAP2P55001 183 aa10.18□□□□□ -0.78
CLK3-213ENST00000563842 MFAP4P55083 255 aa10.18□□□□□ -0.78
CLK3-213ENST00000563842 SRPXP78539 464 aa10.18□□□□□ -0.78
CLK3-213ENST00000563842 IZUMO4Q1ZYL8 232 aa10.18□□□□□ -0.78
CLK3-213ENST00000563842 TMEM268Q5VZI3 342 aa10.18□□□□□ -0.78
CLK3-213ENST00000563842 TRIQKQ629K1 86 aa10.18□□□□□ -0.78
CLK3-213ENST00000563842 HAPLN4Q86UW8 402 aa10.18□□□□□ -0.78
CLK3-213ENST00000563842 OR52E5Q8NH55 327 aa10.18□□□□□ -0.78
CLK3-213ENST00000563842 SCARB1Q8WTV0 552 aa10.18□□□□□ -0.78
CLK3-213ENST00000563842 MARC2Q969Z3 335 aa10.18□□□□□ -0.78
CLK3-213ENST00000563842 MISP3Q96FF7 219 aa10.18□□□□□ -0.78
CLK3-213ENST00000563842 TXN2Q99757 166 aa10.18□□□□□ -0.78
CLK3-213ENST00000563842 SRRQ9GZT4 340 aa10.18□□□□□ -0.78
CLK3-213ENST00000563842 UFC1Q9Y3C8 167 aa10.18□□□□□ -0.78
CLK3-213ENST00000563842 NAP1L6A6NFF2 107 aa10.17□□□□□ -0.78
CLK3-213ENST00000563842 OR2T8A6NH00 312 aa10.17□□□□□ -0.78
CLK3-213ENST00000563842 A8MWP6 167 aa10.17□□□□□ -0.78
CLK3-213ENST00000563842 K7EIM0 57 aa10.17□□□□□ -0.78
CLK3-213ENST00000563842 FOLR2P14207 255 aa10.17□□□□□ -0.78
CLK3-213ENST00000563842 ELLP55199 621 aaPredicted RBP10.17□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms