RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 CXorf58Q96LI9 332 aa10.05□□□□□ -0.8
NEDD8-208ENST00000560427 CTNNBIP1Q9NSA3 81 aaPredicted RBP10.05□□□□□ -0.8
NEDD8-208ENST00000560427 FBXL7Q9UJT9 491 aa10.05□□□□□ -0.8
NEDD8-208ENST00000560427 F11RQ9Y624 299 aaKnown RBP10.05□□□□□ -0.8
NEDD8-208ENST00000560427 VWFP04275 2813 aa10.05□□□□□ -0.8
NEDD8-208ENST00000560427 ST8SIA3O43173 380 aa10.04□□□□□ -0.8
NEDD8-208ENST00000560427 OR2J3O76001 311 aa10.04□□□□□ -0.8
NEDD8-208ENST00000560427 IFNA17P01571 189 aa10.04□□□□□ -0.8
NEDD8-208ENST00000560427 PRH1P02810 166 aa10.04□□□□□ -0.8
NEDD8-208ENST00000560427 REG1AP05451 166 aa10.04□□□□□ -0.8
NEDD8-208ENST00000560427 SULT1A3P0DMM9 295 aa10.04□□□□□ -0.8
NEDD8-208ENST00000560427 SULT1A4P0DMN0 295 aa10.04□□□□□ -0.8
NEDD8-208ENST00000560427 SPCS3P61009 180 aa10.04□□□□□ -0.8
NEDD8-208ENST00000560427 ERHP84090 104 aaKnown RBP10.04□□□□□ -0.8
NEDD8-208ENST00000560427 EXOSC2Q13868 293 aaKnown RBP10.04□□□□□ -0.8
NEDD8-208ENST00000560427 IZUMO4Q1ZYL8 232 aa10.04□□□□□ -0.8
NEDD8-208ENST00000560427 NMSQ5H8A3 153 aa10.04□□□□□ -0.8
NEDD8-208ENST00000560427 OR2C3Q8N628 320 aa10.04□□□□□ -0.8
NEDD8-208ENST00000560427 EEF1AKMT3Q96AZ1 226 aa10.04□□□□□ -0.8
NEDD8-208ENST00000560427 DUX3Q96PT4 197 aa10.04□□□□□ -0.8
NEDD8-208ENST00000560427 ATP6V0BQ99437 205 aa10.04□□□□□ -0.8
NEDD8-208ENST00000560427 ALX4Q9H161 411 aaPredicted RBP10.04□□□□□ -0.8
NEDD8-208ENST00000560427 C20orf85Q9H1P6 137 aa10.04□□□□□ -0.8
NEDD8-208ENST00000560427 PEF1Q9UBV8 284 aaKnown RBP10.04□□□□□ -0.8
NEDD8-208ENST00000560427 CACNG5Q9UF02 275 aa10.04□□□□□ -0.8
NEDD8-208ENST00000560427 IGHV4OR15-8A0A075B7B6 117 aa10.03□□□□□ -0.8
NEDD8-208ENST00000560427 A0A087WW49 117 aa10.03□□□□□ -0.8
NEDD8-208ENST00000560427 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP10.03□□□□□ -0.8
NEDD8-208ENST00000560427 TRBV7-1A0A0A6YYK4 115 aa10.03□□□□□ -0.8
NEDD8-208ENST00000560427 A0A1B0GU03 582 aa10.03□□□□□ -0.8
NEDD8-208ENST00000560427 HLA-AP01891 365 aaKnown RBP10.03□□□□□ -0.8
NEDD8-208ENST00000560427 SLC25A6P12236 298 aa10.03□□□□□ -0.8
NEDD8-208ENST00000560427 SMCO1Q147U7 214 aa10.03□□□□□ -0.8
NEDD8-208ENST00000560427 SAMD5Q5TGI4 173 aa10.03□□□□□ -0.8
NEDD8-208ENST00000560427 COQ8AQ8NI60 647 aa10.03□□□□□ -0.8
NEDD8-208ENST00000560427 GPR146Q96CH1 333 aa10.03□□□□□ -0.8
NEDD8-208ENST00000560427 ENY2Q9NPA8 101 aa10.03□□□□□ -0.8
NEDD8-208ENST00000560427 TBC1D24Q9ULP9 559 aa10.03□□□□□ -0.8
NEDD8-208ENST00000560427 TMED3Q9Y3Q3 217 aa10.03□□□□□ -0.8
NEDD8-208ENST00000560427 PKD1L1Q8TDX9 2849 aa10.03□□□□□ -0.8
NEDD8-208ENST00000560427 C9orf170A2RU37 121 aa10.02□□□□□ -0.81
NEDD8-208ENST00000560427 WIPF1O43516 503 aa10.02□□□□□ -0.81
NEDD8-208ENST00000560427 TCRBP04435 133 aa10.02□□□□□ -0.81
NEDD8-208ENST00000560427 OR4E1P0C645 316 aa10.02□□□□□ -0.81
NEDD8-208ENST00000560427 HOXA1P49639 335 aaPredicted RBP10.02□□□□□ -0.81
NEDD8-208ENST00000560427 DEFA5Q01523 94 aa10.02□□□□□ -0.81
NEDD8-208ENST00000560427 DHRS2Q13268 280 aa10.02□□□□□ -0.81
NEDD8-208ENST00000560427 ANKRD55Q3KP44 614 aa10.02□□□□□ -0.81
NEDD8-208ENST00000560427 C4orf46Q504U0 113 aa10.02□□□□□ -0.81
NEDD8-208ENST00000560427 KPRPQ5T749 579 aaPredicted RBP10.02□□□□□ -0.81
NEDD8-208ENST00000560427 Q6ZRM9 215 aa10.02□□□□□ -0.81
NEDD8-208ENST00000560427 C19orf35Q6ZS72 473 aa10.02□□□□□ -0.81
NEDD8-208ENST00000560427 LYZL2Q7Z4W2 148 aa10.02□□□□□ -0.81
NEDD8-208ENST00000560427 LYG2Q86SG7 212 aa10.02□□□□□ -0.81
NEDD8-208ENST00000560427 VN1R17PQ8TDU5 208 aa10.02□□□□□ -0.81
NEDD8-208ENST00000560427 PRR13Q9NZ81 148 aa10.02□□□□□ -0.81
NEDD8-208ENST00000560427 FLVCR2Q9UPI3 526 aa10.02□□□□□ -0.81
NEDD8-208ENST00000560427 FAM240BA0A1B0GVZ2 78 aa10.01□□□□□ -0.81
NEDD8-208ENST00000560427 CORTO00230 105 aa10.01□□□□□ -0.81
NEDD8-208ENST00000560427 NDUFB8O95169 186 aa10.01□□□□□ -0.81
NEDD8-208ENST00000560427 HOXD3P31249 432 aaPredicted RBP10.01□□□□□ -0.81
NEDD8-208ENST00000560427 SNCAP37840 140 aa10.01□□□□□ -0.81
NEDD8-208ENST00000560427 INSL3P51460 131 aa10.01□□□□□ -0.81
NEDD8-208ENST00000560427 DEFA1P59665 94 aa10.01□□□□□ -0.81
NEDD8-208ENST00000560427 DEFA3P59666 94 aa10.01□□□□□ -0.81
NEDD8-208ENST00000560427 ZMAT5Q9UDW3 170 aaKnown RBP10.01□□□□□ -0.81
NEDD8-208ENST00000560427 DMRT1Q9Y5R6 373 aa10.01□□□□□ -0.81
NEDD8-208ENST00000560427 NBEAL1Q6ZS30 2694 aa10.01□□□□□ -0.81
NEDD8-208ENST00000560427 ANKRD34BA5PLL1 514 aa10□□□□□ -0.81
NEDD8-208ENST00000560427 G3V4G9 280 aa10□□□□□ -0.81
NEDD8-208ENST00000560427 OVOL1O14753 267 aa10□□□□□ -0.81
NEDD8-208ENST00000560427 IGLL1P15814 213 aa10□□□□□ -0.81
NEDD8-208ENST00000560427 ANXA7P20073 488 aaKnown RBP10□□□□□ -0.81
NEDD8-208ENST00000560427 SUB1P53999 127 aaKnown RBP eCLIP10□□□□□ -0.818e-8■■■■□ 26.6
NEDD8-208ENST00000560427 SLURP1P55000 103 aa10□□□□□ -0.81
NEDD8-208ENST00000560427 TATDN3Q17R31 274 aa10□□□□□ -0.81
NEDD8-208ENST00000560427 RPEL1Q2QD12 228 aa10□□□□□ -0.81
NEDD8-208ENST00000560427 BSXQ3C1V8 233 aa10□□□□□ -0.81
NEDD8-208ENST00000560427 C9orf66Q5T8R8 295 aa10□□□□□ -0.81
NEDD8-208ENST00000560427 PVRIGQ6DKI7 326 aa10□□□□□ -0.81
NEDD8-208ENST00000560427 SLC25A24Q6NUK1 477 aa10□□□□□ -0.81
NEDD8-208ENST00000560427 ZNF502Q8TBZ5 544 aa10□□□□□ -0.81
NEDD8-208ENST00000560427 ENKURQ8TC29 256 aa10□□□□□ -0.81
NEDD8-208ENST00000560427 MITD1Q8WV92 249 aa10□□□□□ -0.81
NEDD8-208ENST00000560427 DCUN1D4Q92564 292 aa10□□□□□ -0.81
NEDD8-208ENST00000560427 CCDC140Q96MF4 163 aa10□□□□□ -0.81
NEDD8-208ENST00000560427 NUDT15Q9NV35 164 aa10□□□□□ -0.81
NEDD8-208ENST00000560427 GAR1Q9NY12 217 aaKnown RBP10□□□□□ -0.81
NEDD8-208ENST00000560427 HSPB7Q9UBY9 170 aa10□□□□□ -0.81
NEDD8-208ENST00000560427 MFSD2BA6NFX1 497 aa9.99□□□□□ -0.81
NEDD8-208ENST00000560427 FAM90A26D6RGX4 464 aa9.99□□□□□ -0.81
NEDD8-208ENST00000560427 BMPR1BO00238 502 aa9.99□□□□□ -0.81
NEDD8-208ENST00000560427 GGCTO75223 188 aaKnown RBP9.99□□□□□ -0.81
NEDD8-208ENST00000560427 PITX3O75364 302 aa9.99□□□□□ -0.81
NEDD8-208ENST00000560427 HTR2BP41595 481 aa9.99□□□□□ -0.81
NEDD8-208ENST00000560427 MFAP2P55001 183 aa9.99□□□□□ -0.81
NEDD8-208ENST00000560427 IFITM3Q01628 133 aa9.99□□□□□ -0.81
NEDD8-208ENST00000560427 TNFRSF9Q07011 255 aa9.99□□□□□ -0.81
NEDD8-208ENST00000560427 BEAN1Q3B7T3 259 aa9.99□□□□□ -0.81
NEDD8-208ENST00000560427 OXLD1Q5BKU9 147 aa9.99□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms