RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 IGLC7A0M8Q6 106 aa7.23□□□□□ -1.25
LDLR-210ENST00000559340 FAM223BA6NKX1 122 aa7.23□□□□□ -1.25
LDLR-210ENST00000559340 E7EUB6 86 aa7.23□□□□□ -1.25
LDLR-210ENST00000559340 L7N2F9 121 aa7.23□□□□□ -1.25
LDLR-210ENST00000559340 SYNGR2O43760 224 aa7.23□□□□□ -1.25
LDLR-210ENST00000559340 SCGB1D2O95969 90 aa7.23□□□□□ -1.25
LDLR-210ENST00000559340 IGLV1-40P01703 118 aa7.23□□□□□ -1.25
LDLR-210ENST00000559340 TRGV3P03979 118 aa7.23□□□□□ -1.25
LDLR-210ENST00000559340 APELAP0DMC3 54 aa7.23□□□□□ -1.25
LDLR-210ENST00000559340 MYOD1P15172 320 aa7.23□□□□□ -1.25
LDLR-210ENST00000559340 RAB9AP51151 201 aa7.23□□□□□ -1.25
LDLR-210ENST00000559340 RAB11AP62491 216 aa7.23□□□□□ -1.25
LDLR-210ENST00000559340 VAMP2P63027 116 aa7.23□□□□□ -1.25
LDLR-210ENST00000559340 ID3Q02535 119 aa7.23□□□□□ -1.25
LDLR-210ENST00000559340 CFHR3Q02985 330 aa7.23□□□□□ -1.25
LDLR-210ENST00000559340 SLC25A24Q6NUK1 477 aa7.23□□□□□ -1.25
LDLR-210ENST00000559340 SHISA2Q6UWI4 295 aa7.23□□□□□ -1.25
LDLR-210ENST00000559340 FAM223AQ8IWN6 122 aa7.23□□□□□ -1.25
LDLR-210ENST00000559340 RNF152Q8N8N0 203 aa7.23□□□□□ -1.25
LDLR-210ENST00000559340 ZNF114Q8NC26 417 aa7.23□□□□□ -1.25
LDLR-210ENST00000559340 OR10W1Q8NGF6 305 aa7.23□□□□□ -1.25
LDLR-210ENST00000559340 OR1P1Q8NH06 330 aa7.23□□□□□ -1.25
LDLR-210ENST00000559340 DTD1Q8TEA8 209 aa7.23□□□□□ -1.25
LDLR-210ENST00000559340 TAF15Q92804 592 aaKnown RBP eCLIP7.23□□□□□ -1.25
LDLR-210ENST00000559340 OR10C1Q96KK4 312 aa7.23□□□□□ -1.25
LDLR-210ENST00000559340 RAB40CQ96S21 281 aa7.23□□□□□ -1.25
LDLR-210ENST00000559340 NMES1Q9C002 83 aa7.23□□□□□ -1.25
LDLR-210ENST00000559340 RBKSQ9H477 322 aa7.23□□□□□ -1.25
LDLR-210ENST00000559340 TSSC4Q9Y5U2 329 aaPredicted RBP7.23□□□□□ -1.25
LDLR-210ENST00000559340 F11RQ9Y624 299 aaKnown RBP7.23□□□□□ -1.25
LDLR-210ENST00000559340 CGB1A6NKQ9 187 aa7.22□□□□□ -1.25
LDLR-210ENST00000559340 CCSO14618 274 aa7.22□□□□□ -1.25
LDLR-210ENST00000559340 SCAF4O95104 1147 aaKnown RBP7.22□□□□□ -1.25
LDLR-210ENST00000559340 IFNA10P01566 189 aa7.22□□□□□ -1.25
LDLR-210ENST00000559340 AREGP15514 252 aa7.22□□□□□ -1.25
LDLR-210ENST00000559340 PSMB8P28062 276 aa7.22□□□□□ -1.25
LDLR-210ENST00000559340 TPPP2P59282 170 aa7.22□□□□□ -1.25
LDLR-210ENST00000559340 TAS2R30P59541 319 aa7.22□□□□□ -1.25
LDLR-210ENST00000559340 RRAS2P62070 204 aaPredicted RBP7.22□□□□□ -1.25
LDLR-210ENST00000559340 RPL23AP62750 156 aaKnown RBP7.22□□□□□ -1.25
LDLR-210ENST00000559340 CD83Q01151 205 aa7.22□□□□□ -1.25
LDLR-210ENST00000559340 ATP5G2Q06055 141 aa7.22□□□□□ -1.25
LDLR-210ENST00000559340 WT1-ASQ06250 92 aa7.22□□□□□ -1.25
LDLR-210ENST00000559340 KLK9Q2XQG4 91 aa7.22□□□□□ -1.25
LDLR-210ENST00000559340 KHDC1LQ5JSQ8 128 aa7.22□□□□□ -1.25
LDLR-210ENST00000559340 ASPHD1Q5U4P2 390 aa7.22□□□□□ -1.25
LDLR-210ENST00000559340 NDUFA11Q86Y39 141 aa7.22□□□□□ -1.25
LDLR-210ENST00000559340 NECAP1Q8NC96 275 aa7.22□□□□□ -1.25
LDLR-210ENST00000559340 OR4D5Q8NGN0 318 aa7.22□□□□□ -1.25
LDLR-210ENST00000559340 WIPF2Q8TF74 440 aaPredicted RBP7.22□□□□□ -1.25
LDLR-210ENST00000559340 CXorf58Q96LI9 332 aa7.22□□□□□ -1.25
LDLR-210ENST00000559340 KLK9Q9UKQ9 250 aa7.22□□□□□ -1.25
LDLR-210ENST00000559340 A0A1B0GW64 132 aa7.21□□□□□ -1.26
LDLR-210ENST00000559340 RPS10-NUDT3A0A1W2PQS6 291 aa7.21□□□□□ -1.26
LDLR-210ENST00000559340 MPTX1A8MV57 137 aa7.21□□□□□ -1.26
LDLR-210ENST00000559340 NXPH3O95157 252 aa7.21□□□□□ -1.26
LDLR-210ENST00000559340 REG1AP05451 166 aa7.21□□□□□ -1.26
LDLR-210ENST00000559340 PET100P0DJ07 73 aa7.21□□□□□ -1.26
LDLR-210ENST00000559340 CDX1P47902 265 aaPredicted RBP7.21□□□□□ -1.26
LDLR-210ENST00000559340 RHOGP84095 191 aa7.21□□□□□ -1.26
LDLR-210ENST00000559340 FGL1Q08830 312 aa7.21□□□□□ -1.26
LDLR-210ENST00000559340 EXOSC2Q13868 293 aaKnown RBP7.21□□□□□ -1.26
LDLR-210ENST00000559340 C2orf83Q53S99 150 aa7.21□□□□□ -1.26
LDLR-210ENST00000559340 SPINK9Q5DT21 86 aa7.21□□□□□ -1.26
LDLR-210ENST00000559340 ETFRF1Q6IPR1 90 aa7.21□□□□□ -1.26
LDLR-210ENST00000559340 SLC24A4Q8NFF2 622 aa7.21□□□□□ -1.26
LDLR-210ENST00000559340 SMIM8Q96KF7 97 aa7.21□□□□□ -1.26
LDLR-210ENST00000559340 UBE2E2Q96LR5 201 aa7.21□□□□□ -1.26
LDLR-210ENST00000559340 MS4A10Q96PG2 267 aa7.21□□□□□ -1.26
LDLR-210ENST00000559340 P2RX4Q99571 388 aa7.21□□□□□ -1.26
LDLR-210ENST00000559340 GAR1Q9NY12 217 aaKnown RBP7.21□□□□□ -1.26
LDLR-210ENST00000559340 FBXL7Q9UJT9 491 aa7.21□□□□□ -1.26
LDLR-210ENST00000559340 STRAPQ9Y3F4 350 aaKnown RBP7.21□□□□□ -1.26
LDLR-210ENST00000559340 LSM5Q9Y4Y9 91 aaKnown RBP7.21□□□□□ -1.26
LDLR-210ENST00000559340 NBEAL1Q6ZS30 2694 aa7.21□□□□□ -1.26
LDLR-210ENST00000559340 IGLV11-55A0A075B6I3 123 aa7.2□□□□□ -1.26
LDLR-210ENST00000559340 TRBV9A0A0B4J1U6 114 aa7.2□□□□□ -1.26
LDLR-210ENST00000559340 NUDT19A8MXV4 375 aa7.2□□□□□ -1.26
LDLR-210ENST00000559340 SOX15O60248 233 aa7.2□□□□□ -1.26
LDLR-210ENST00000559340 TSC22D2O75157 780 aa7.2□□□□□ -1.26
LDLR-210ENST00000559340 SCGB2A1O75556 95 aa7.2□□□□□ -1.26
LDLR-210ENST00000559340 SIX6O95475 246 aa7.2□□□□□ -1.26
LDLR-210ENST00000559340 MBPP02686 304 aaPredicted RBP7.2□□□□□ -1.26
LDLR-210ENST00000559340 IFNA4P05014 189 aa7.2□□□□□ -1.26
LDLR-210ENST00000559340 RNASE2P10153 161 aaKnown RBP7.2□□□□□ -1.26
LDLR-210ENST00000559340 CD28P10747 220 aa7.2□□□□□ -1.26
LDLR-210ENST00000559340 NPY1RP25929 384 aa7.2□□□□□ -1.26
LDLR-210ENST00000559340 S100A10P60903 97 aa7.2□□□□□ -1.26
LDLR-210ENST00000559340 POLR2GP62487 172 aaKnown RBP eCLIP7.2□□□□□ -1.26
LDLR-210ENST00000559340 SRSF4Q08170 494 aaKnown RBP7.2□□□□□ -1.26
LDLR-210ENST00000559340 FCN2Q15485 313 aa7.2□□□□□ -1.26
LDLR-210ENST00000559340 C2orf68Q2NKX9 166 aa7.2□□□□□ -1.26
LDLR-210ENST00000559340 Q6ZNX1 250 aa7.2□□□□□ -1.26
LDLR-210ENST00000559340 ZNF491Q8N8L2 437 aa7.2□□□□□ -1.26
LDLR-210ENST00000559340 RNASEH2CQ8TDP1 164 aaKnown RBP7.2□□□□□ -1.26
LDLR-210ENST00000559340 VN1R17PQ8TDU5 208 aa7.2□□□□□ -1.26
LDLR-210ENST00000559340 EEF1AKMT3Q96AZ1 226 aa7.2□□□□□ -1.26
LDLR-210ENST00000559340 MISP3Q96FF7 219 aa7.2□□□□□ -1.26
LDLR-210ENST00000559340 ATP6V0BQ99437 205 aa7.2□□□□□ -1.26
LDLR-210ENST00000559340 CITED1Q99966 193 aa7.2□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms