RNA–Protein interactions for RNA: ENST00000558157.5

USP3-206, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,439 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-206ENST00000558157 MTCH1Q9NZJ7 389 aa9.03□□□□□ -0.96
USP3-206ENST00000558157 OR51B2Q9Y5P1 312 aa9.03□□□□□ -0.96
USP3-206ENST00000558157 MUC21A0A0G2JKD1 596 aa9.02□□□□□ -0.97
USP3-206ENST00000558157 MUC21A0A140T8X8 626 aa9.02□□□□□ -0.97
USP3-206ENST00000558157 A0A1W2PR80 420 aa9.02□□□□□ -0.97
USP3-206ENST00000558157 NPIPA3F8WFD2 350 aa9.02□□□□□ -0.97
USP3-206ENST00000558157 WISP2O76076 250 aa9.02□□□□□ -0.97
USP3-206ENST00000558157 RIPPLY3P57055 190 aa9.02□□□□□ -0.97
USP3-206ENST00000558157 MUC21Q5SSG8 566 aa9.02□□□□□ -0.97
USP3-206ENST00000558157 EBLN2Q6P2I7 272 aa9.02□□□□□ -0.97
USP3-206ENST00000558157 CPT1CQ8TCG5 803 aa9.02□□□□□ -0.97
USP3-206ENST00000558157 TAAR6Q96RI8 345 aa9.02□□□□□ -0.97
USP3-206ENST00000558157 PMCHL2Q9BQD1 86 aa9.02□□□□□ -0.97
USP3-206ENST00000558157 SF3B5Q9BWJ5 86 aaKnown RBP9.02□□□□□ -0.97
USP3-206ENST00000558157 MS4A6AQ9H2W1 248 aa9.02□□□□□ -0.97
USP3-206ENST00000558157 PPP1R3CQ9UQK1 317 aa9.02□□□□□ -0.97
USP3-206ENST00000558157 PTPRQQ9UMZ3 2332 aa9.02□□□□□ -0.97
USP3-206ENST00000558157 GAGE10A6NGK3 116 aa9.02□□□□□ -0.97
USP3-206ENST00000558157 TRAPPC2LH3BP13 241 aa9.02□□□□□ -0.97
USP3-206ENST00000558157 FRMD6-AS1P0C7T7 363 aa9.02□□□□□ -0.97
USP3-206ENST00000558157 GNG4P50150 75 aa9.02□□□□□ -0.97
USP3-206ENST00000558157 RELBQ01201 579 aa9.02□□□□□ -0.97
USP3-206ENST00000558157 KIAA1644Q3SXP7 199 aa9.02□□□□□ -0.97
USP3-206ENST00000558157 UFSP1Q6NVU6 142 aa9.02□□□□□ -0.97
USP3-206ENST00000558157 C16orf54Q6UWD8 224 aa9.02□□□□□ -0.97
USP3-206ENST00000558157 NEUROG1Q92886 237 aa9.02□□□□□ -0.97
USP3-206ENST00000558157 GP6Q9HCN6 339 aa9.02□□□□□ -0.97
USP3-206ENST00000558157 ZNF331Q9NQX6 463 aaPredicted RBP9.02□□□□□ -0.97
USP3-206ENST00000558157 DOCK11Q5JSL3 2073 aa9.02□□□□□ -0.97
USP3-206ENST00000558157 DNAJC13O75165 2243 aa9.01□□□□□ -0.97
USP3-206ENST00000558157 IZUMO1RA6ND01 250 aa9.01□□□□□ -0.97
USP3-206ENST00000558157 ZNF716A6NP11 495 aa9.01□□□□□ -0.97
USP3-206ENST00000558157 IGHG3P01860 377 aa9.01□□□□□ -0.97
USP3-206ENST00000558157 PCBD1P61457 104 aa9.01□□□□□ -0.97
USP3-206ENST00000558157 TNXAQ16473 311 aa9.01□□□□□ -0.97
USP3-206ENST00000558157 SAMD13Q5VXD3 122 aa9.01□□□□□ -0.97
USP3-206ENST00000558157 YTHDF2Q9Y5A9 579 aaKnown RBP9.01□□□□□ -0.97
USP3-206ENST00000558157 A0A1B0GV72 72 aa9.01□□□□□ -0.97
USP3-206ENST00000558157 OR4C46A6NHA9 309 aa9.01□□□□□ -0.97
USP3-206ENST00000558157 RAB29O14966 203 aa9.01□□□□□ -0.97
USP3-206ENST00000558157 ZNHIT1O43257 154 aa9.01□□□□□ -0.97
USP3-206ENST00000558157 ZNF16P17020 682 aaPredicted RBP9.01□□□□□ -0.97
USP3-206ENST00000558157 GCHFRP30047 84 aa9.01□□□□□ -0.97
USP3-206ENST00000558157 WDR31Q8NA23 367 aa9.01□□□□□ -0.97
USP3-206ENST00000558157 TMEM186Q96B77 213 aa9.01□□□□□ -0.97
USP3-206ENST00000558157 KCNIP1Q9NZI2 227 aa9.01□□□□□ -0.97
USP3-206ENST00000558157 CACNA1GO43497 2377 aa9□□□□□ -0.97
USP3-206ENST00000558157 TRAV8-6A0A0B4J262 113 aa9□□□□□ -0.97
USP3-206ENST00000558157 HELTA6NFD8 242 aa9□□□□□ -0.97
USP3-206ENST00000558157 DEFA4P12838 97 aa9□□□□□ -0.97
USP3-206ENST00000558157 LGALS7P47929 136 aa9□□□□□ -0.97
USP3-206ENST00000558157 EDDM3BP56851 147 aa9□□□□□ -0.97
USP3-206ENST00000558157 TIGITQ495A1 244 aa9□□□□□ -0.97
USP3-206ENST00000558157 PDLIM3Q53GG5 364 aaPredicted RBP9□□□□□ -0.97
USP3-206ENST00000558157 C20orf204Q6ZNR8 217 aa9□□□□□ -0.97
USP3-206ENST00000558157 NEGR1Q7Z3B1 354 aa9□□□□□ -0.97
USP3-206ENST00000558157 TMEM45BQ96B21 275 aa9□□□□□ -0.97
USP3-206ENST00000558157 PRDM14Q9GZV8 571 aa9□□□□□ -0.97
USP3-206ENST00000558157 KCNS2Q9ULS6 477 aa9□□□□□ -0.97
USP3-206ENST00000558157 BOD1L1Q8NFC6 3051 aa9□□□□□ -0.97
USP3-206ENST00000558157 ZG16O60844 167 aa9□□□□□ -0.97
USP3-206ENST00000558157 SAP30O75446 220 aa9□□□□□ -0.97
USP3-206ENST00000558157 OR2J3O76001 311 aa9□□□□□ -0.97
USP3-206ENST00000558157 FAM87AP0C7U9 286 aa9□□□□□ -0.97
USP3-206ENST00000558157 GPR6P46095 362 aaPredicted RBP9□□□□□ -0.97
USP3-206ENST00000558157 DRAM1Q8N682 238 aa9□□□□□ -0.97
USP3-206ENST00000558157 OR1B1Q8NGR6 318 aa9□□□□□ -0.97
USP3-206ENST00000558157 SARAFQ96BY9 339 aa9□□□□□ -0.97
USP3-206ENST00000558157 TMEM191AQ9H0A3 160 aa9□□□□□ -0.97
USP3-206ENST00000558157 ZNF71Q9NQZ8 489 aaPredicted RBP9□□□□□ -0.97
USP3-206ENST00000558157 TNFRSF19Q9NS68 423 aa9□□□□□ -0.97
USP3-206ENST00000558157 TMEM38BQ9NVV0 291 aa9□□□□□ -0.97
USP3-206ENST00000558157 BSNQ9UPA5 3926 aa9□□□□□ -0.97
USP3-206ENST00000558157 ATMQ13315 3056 aa8.99□□□□□ -0.97
USP3-206ENST00000558157 AHRRA9YTQ3 701 aa8.99□□□□□ -0.97
USP3-206ENST00000558157 CLDN14O95500 239 aa8.99□□□□□ -0.97
USP3-206ENST00000558157 CELA3BP08861 270 aa8.99□□□□□ -0.97
USP3-206ENST00000558157 USF1P22415 310 aaPredicted RBP8.99□□□□□ -0.97
USP3-206ENST00000558157 SSTR5P35346 364 aa8.99□□□□□ -0.97
USP3-206ENST00000558157 CA7P43166 264 aa8.99□□□□□ -0.97
USP3-206ENST00000558157 ARF1P84077 181 aaKnown RBP8.99□□□□□ -0.97
USP3-206ENST00000558157 CEACAM21Q3KPI0 293 aa8.99□□□□□ -0.97
USP3-206ENST00000558157 CENPWQ5EE01 88 aa8.99□□□□□ -0.97
USP3-206ENST00000558157 GCSAMLQ5JQS6 135 aa8.99□□□□□ -0.97
USP3-206ENST00000558157 C1QTNF5Q9BXJ0 243 aa8.99□□□□□ -0.97
USP3-206ENST00000558157 SCRT2Q9NQ03 307 aa8.99□□□□□ -0.97
USP3-206ENST00000558157 OR1A1Q9P1Q5 309 aa8.99□□□□□ -0.97
USP3-206ENST00000558157 CHD8Q9HCK8 2581 aa8.99□□□□□ -0.97
USP3-206ENST00000558157 C7orf71A4D174 169 aa8.99□□□□□ -0.97
USP3-206ENST00000558157 C15orf62A8K5M9 175 aa8.99□□□□□ -0.97
USP3-206ENST00000558157 HSPB6O14558 160 aa8.99□□□□□ -0.97
USP3-206ENST00000558157 ZNF32P17041 273 aa8.99□□□□□ -0.97
USP3-206ENST00000558157 CATR1Q13166 79 aa8.99□□□□□ -0.97
USP3-206ENST00000558157 C5orf17Q8NAS9 161 aa8.99□□□□□ -0.97
USP3-206ENST00000558157 IL1F10Q8WWZ1 152 aa8.99□□□□□ -0.97
USP3-206ENST00000558157 RRHO14718 337 aa8.98□□□□□ -0.97
USP3-206ENST00000558157 NTF4P34130 210 aa8.98□□□□□ -0.97
USP3-206ENST00000558157 SPATA46Q5T0L3 261 aa8.98□□□□□ -0.97
USP3-206ENST00000558157 ERASQ7Z444 233 aa8.98□□□□□ -0.97
USP3-206ENST00000558157 ZNF645Q8N7E2 425 aa8.98□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms