RNA–Protein interactions for RNA: ENST00000558088.1

VPS13C-205, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 549 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-205ENST00000558088 CTSDP07339 412 aaPredicted RBP-0.29□□□□□ -2.46
VPS13C-205ENST00000558088 SRP19P09132 144 aaKnown RBP-0.29□□□□□ -2.46
VPS13C-205ENST00000558088 RPS24P62847 133 aaKnown RBP-0.29□□□□□ -2.46
VPS13C-205ENST00000558088 KRTAP26-1Q6PEX3 210 aa-0.29□□□□□ -2.46
VPS13C-205ENST00000558088 Q6ZS92 163 aa-0.29□□□□□ -2.46
VPS13C-205ENST00000558088 FAM19A5Q7Z5A7 132 aaPredicted RBP-0.29□□□□□ -2.46
VPS13C-205ENST00000558088 OR7G1Q8NGA0 311 aa-0.29□□□□□ -2.46
VPS13C-205ENST00000558088 OR5A1Q8NGJ0 315 aa-0.29□□□□□ -2.46
VPS13C-205ENST00000558088 HAVCR2Q8TDQ0 301 aa-0.29□□□□□ -2.46
VPS13C-205ENST00000558088 SLC37A2Q8TED4 501 aa-0.29□□□□□ -2.46
VPS13C-205ENST00000558088 SCGB3A1Q96QR1 104 aa-0.29□□□□□ -2.46
VPS13C-205ENST00000558088 DERL2Q9GZP9 239 aa-0.29□□□□□ -2.46
VPS13C-205ENST00000558088 HDHD2Q9H0R4 259 aa-0.29□□□□□ -2.46
VPS13C-205ENST00000558088 POFUT2Q9Y2G5 429 aa-0.29□□□□□ -2.46
VPS13C-205ENST00000558088 CCDC88AQ3V6T2 1871 aa-0.29□□□□□ -2.46
VPS13C-205ENST00000558088 A0A1W2PP64 1363 aa-0.3□□□□□ -2.46
VPS13C-205ENST00000558088 KIAA0232Q92628 1395 aa-0.3□□□□□ -2.46
VPS13C-205ENST00000558088 THSD7AQ9UPZ6 1657 aa-0.3□□□□□ -2.46
VPS13C-205ENST00000558088 GOLGA8QA0A0J9YX86 632 aa-0.3□□□□□ -2.46
VPS13C-205ENST00000558088 PROSCO94903 275 aa-0.3□□□□□ -2.46
VPS13C-205ENST00000558088 SPINK1P00995 79 aa-0.3□□□□□ -2.46
VPS13C-205ENST00000558088 C1QAP02745 245 aa-0.3□□□□□ -2.46
VPS13C-205ENST00000558088 LCN1P31025 176 aa-0.3□□□□□ -2.46
VPS13C-205ENST00000558088 KDELR2P33947 212 aa-0.3□□□□□ -2.46
VPS13C-205ENST00000558088 CD151P48509 253 aa-0.3□□□□□ -2.46
VPS13C-205ENST00000558088 ZNF80P51504 273 aaPredicted RBP-0.3□□□□□ -2.46
VPS13C-205ENST00000558088 SYCP1Q15431 976 aa-0.3□□□□□ -2.46
VPS13C-205ENST00000558088 C1orf137Q5JT78 98 aa-0.3□□□□□ -2.46
VPS13C-205ENST00000558088 FAM78BQ5VT40 261 aa-0.3□□□□□ -2.46
VPS13C-205ENST00000558088 C5orf46Q6UWT4 87 aa-0.3□□□□□ -2.46
VPS13C-205ENST00000558088 LINC00322Q6ZN03 302 aaPredicted RBP-0.3□□□□□ -2.46
VPS13C-205ENST00000558088 PRRT1Q99946 306 aa-0.3□□□□□ -2.46
VPS13C-205ENST00000558088 MED29Q9NX70 200 aa-0.3□□□□□ -2.46
VPS13C-205ENST00000558088 JPT1Q9UK76 154 aa-0.3□□□□□ -2.46
VPS13C-205ENST00000558088 DKKL1Q9UK85 242 aa-0.3□□□□□ -2.46
VPS13C-205ENST00000558088 E9PCH4 1651 aa-0.3□□□□□ -2.46
VPS13C-205ENST00000558088 NCOR2Q9Y618 2525 aa-0.31□□□□□ -2.46
VPS13C-205ENST00000558088 A0A0D9SG52 128 aa-0.31□□□□□ -2.46
VPS13C-205ENST00000558088 IGHV1-69-2A0A0G2JMI3 117 aa-0.31□□□□□ -2.46
VPS13C-205ENST00000558088 LST1O00453 97 aa-0.31□□□□□ -2.46
VPS13C-205ENST00000558088 CLPSP04118 112 aa-0.31□□□□□ -2.46
VPS13C-205ENST00000558088 PET100P0DJ07 73 aa-0.31□□□□□ -2.46
VPS13C-205ENST00000558088 FGF6P10767 208 aa-0.31□□□□□ -2.46
VPS13C-205ENST00000558088 CLDN12P56749 244 aa-0.31□□□□□ -2.46
VPS13C-205ENST00000558088 QRFPP83859 136 aa-0.31□□□□□ -2.46
VPS13C-205ENST00000558088 RHEBQ15382 184 aa-0.31□□□□□ -2.46
VPS13C-205ENST00000558088 LINC01554Q52M75 96 aa-0.31□□□□□ -2.46
VPS13C-205ENST00000558088 IBA57Q5T440 356 aaKnown RBP-0.31□□□□□ -2.46
VPS13C-205ENST00000558088 AADACL3Q5VUY0 350 aa-0.31□□□□□ -2.46
VPS13C-205ENST00000558088 IQCF2Q8IXL9 164 aa-0.31□□□□□ -2.46
VPS13C-205ENST00000558088 EEF1AKMT1Q8WVE0 214 aa-0.31□□□□□ -2.46
VPS13C-205ENST00000558088 C4orf3Q8WVX3 66 aa-0.31□□□□□ -2.46
VPS13C-205ENST00000558088 RASSF5Q8WWW0 418 aa-0.31□□□□□ -2.46
VPS13C-205ENST00000558088 MSANTD3Q96H12 275 aa-0.31□□□□□ -2.46
VPS13C-205ENST00000558088 COMMD5Q9GZQ3 224 aa-0.31□□□□□ -2.46
VPS13C-205ENST00000558088 C6orf62Q9GZU0 229 aaPredicted RBP-0.31□□□□□ -2.46
VPS13C-205ENST00000558088 MS4A6AQ9H2W1 248 aa-0.31□□□□□ -2.46
VPS13C-205ENST00000558088 EFCAB1Q9HAE3 211 aa-0.31□□□□□ -2.46
VPS13C-205ENST00000558088 SPACA1Q9HBV2 294 aa-0.31□□□□□ -2.46
VPS13C-205ENST00000558088 C14orf105Q9NVL8 296 aa-0.31□□□□□ -2.46
VPS13C-205ENST00000558088 TNFSF18Q9UNG2 199 aa-0.31□□□□□ -2.46
VPS13C-205ENST00000558088 PEAK1Q9H792 1746 aa-0.31□□□□□ -2.46
VPS13C-205ENST00000558088 ZFYVE26Q68DK2 2539 aa-0.31□□□□□ -2.46
VPS13C-205ENST00000558088 DICER1Q9UPY3 1922 aaKnown RBP-0.32□□□□□ -2.46
VPS13C-205ENST00000558088 IGF2RP11717 2491 aa-0.32□□□□□ -2.46
VPS13C-205ENST00000558088 TRBV20OR9-2A0A075B6H5 130 aa-0.32□□□□□ -2.46
VPS13C-205ENST00000558088 LINC00854A0A1B0GVQ3 168 aa-0.32□□□□□ -2.46
VPS13C-205ENST00000558088 OR4C45A6NMZ5 311 aa-0.32□□□□□ -2.46
VPS13C-205ENST00000558088 LYZL6O75951 148 aa-0.32□□□□□ -2.46
VPS13C-205ENST00000558088 BAALC-AS2P0C853 105 aa-0.32□□□□□ -2.46
VPS13C-205ENST00000558088 UGT2B7P16662 529 aa-0.32□□□□□ -2.46
VPS13C-205ENST00000558088 DDTP30046 118 aa-0.32□□□□□ -2.46
VPS13C-205ENST00000558088 PPP1R1AQ13522 171 aa-0.32□□□□□ -2.46
VPS13C-205ENST00000558088 KRTAP6-1Q3LI64 71 aa-0.32□□□□□ -2.46
VPS13C-205ENST00000558088 C1orf194Q5T5A4 169 aa-0.32□□□□□ -2.46
VPS13C-205ENST00000558088 SYPL2Q5VXT5 272 aa-0.32□□□□□ -2.46
VPS13C-205ENST00000558088 GLT8D1Q68CQ7 371 aa-0.32□□□□□ -2.46
VPS13C-205ENST00000558088 LINC00575Q6W349 94 aa-0.32□□□□□ -2.46
VPS13C-205ENST00000558088 PLEKHG7Q6ZR37 379 aa-0.32□□□□□ -2.46
VPS13C-205ENST00000558088 DEFB128Q7Z7B8 93 aa-0.32□□□□□ -2.46
VPS13C-205ENST00000558088 CRLF3Q8IUI8 442 aa-0.32□□□□□ -2.46
VPS13C-205ENST00000558088 BOD1L2Q8IYS8 172 aa-0.32□□□□□ -2.46
VPS13C-205ENST00000558088 C1orf109Q9NX04 203 aa-0.32□□□□□ -2.46
VPS13C-205ENST00000558088 TAS2R7Q9NYW3 318 aa-0.32□□□□□ -2.46
VPS13C-205ENST00000558088 ASH1LQ9NR48 2969 aaKnown RBP-0.32□□□□□ -2.46
VPS13C-205ENST00000558088 ASCC3Q8N3C0 2202 aaKnown RBP-0.33□□□□□ -2.46
VPS13C-205ENST00000558088 COL1A1P02452 1464 aaPredicted RBP-0.33□□□□□ -2.46
VPS13C-205ENST00000558088 TRAV12-1A0A0B4J245 112 aa-0.33□□□□□ -2.46
VPS13C-205ENST00000558088 SMLR1H3BR10 107 aa-0.33□□□□□ -2.46
VPS13C-205ENST00000558088 TCL1BO95988 128 aa-0.33□□□□□ -2.46
VPS13C-205ENST00000558088 APOA1P02647 267 aa-0.33□□□□□ -2.46
VPS13C-205ENST00000558088 KRT7P08729 469 aa-0.33□□□□□ -2.46
VPS13C-205ENST00000558088 MIFP14174 115 aa-0.33□□□□□ -2.46
VPS13C-205ENST00000558088 FXYD6P3P58550 94 aa-0.33□□□□□ -2.46
VPS13C-205ENST00000558088 IFITM2Q01629 132 aa-0.33□□□□□ -2.46
VPS13C-205ENST00000558088 RSU1Q15404 277 aa-0.33□□□□□ -2.46
VPS13C-205ENST00000558088 GRK1Q15835 563 aa-0.33□□□□□ -2.46
VPS13C-205ENST00000558088 DEFB113Q30KQ7 82 aa-0.33□□□□□ -2.46
VPS13C-205ENST00000558088 C12orf74Q32Q52 190 aa-0.33□□□□□ -2.46
VPS13C-205ENST00000558088 C3orf56Q8N813 242 aa-0.33□□□□□ -2.46
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms