RNA–Protein interactions for RNA: ENST00000555612.5

SYNE2-220, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 6,766 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-220ENST00000555612 ZNF585BQ52M93 769 aa6.86□□□□□ -1.31
SYNE2-220ENST00000555612 ZNF385CQ66K41 422 aaPredicted RBP6.86□□□□□ -1.31
SYNE2-220ENST00000555612 C12orf54Q6X4T0 127 aa6.86□□□□□ -1.31
SYNE2-220ENST00000555612 C17orf82Q86X59 251 aaPredicted RBP6.86□□□□□ -1.31
SYNE2-220ENST00000555612 MDS2Q8NDY4 140 aa6.86□□□□□ -1.31
SYNE2-220ENST00000555612 A0A1B0GTI1 187 aa6.86□□□□□ -1.31
SYNE2-220ENST00000555612 H3BUX3 64 aa6.86□□□□□ -1.31
SYNE2-220ENST00000555612 IFT22Q9H7X7 185 aa6.86□□□□□ -1.31
SYNE2-220ENST00000555612 TRAV14DV4A0A0A6YYC5 116 aa6.86□□□□□ -1.31
SYNE2-220ENST00000555612 TRAV41A0A0B4J266 112 aa6.86□□□□□ -1.31
SYNE2-220ENST00000555612 VN1R17PQ8TDU5 208 aa6.86□□□□□ -1.31
SYNE2-220ENST00000555612 CKAP5Q14008 2032 aa6.86□□□□□ -1.31
SYNE2-220ENST00000555612 GGCTO75223 188 aaKnown RBP6.86□□□□□ -1.31
SYNE2-220ENST00000555612 SELLP14151 372 aa6.86□□□□□ -1.31
SYNE2-220ENST00000555612 Q5PR19 223 aa6.86□□□□□ -1.31
SYNE2-220ENST00000555612 WFDC12Q8WWY7 111 aa6.86□□□□□ -1.31
SYNE2-220ENST00000555612 GTF3AQ92664 365 aaKnown RBP6.86□□□□□ -1.31
SYNE2-220ENST00000555612 NPDC1Q9NQX5 325 aaPredicted RBP6.86□□□□□ -1.31
SYNE2-220ENST00000555612 BET1LQ9NYM9 111 aa6.86□□□□□ -1.31
SYNE2-220ENST00000555612 SRSF7Q16629 238 aaKnown RBP eCLIP6.85□□□□□ -1.31
SYNE2-220ENST00000555612 OR13C6PQ8NH95 151 aa6.85□□□□□ -1.31
SYNE2-220ENST00000555612 SCN5AQ14524 2016 aa6.85□□□□□ -1.31
SYNE2-220ENST00000555612 CIDEAO60543 219 aa6.85□□□□□ -1.31
SYNE2-220ENST00000555612 EGR1P18146 543 aa6.85□□□□□ -1.31
SYNE2-220ENST00000555612 TFF3Q07654 80 aa6.85□□□□□ -1.31
SYNE2-220ENST00000555612 TCF24Q7RTU0 167 aa6.85□□□□□ -1.31
SYNE2-220ENST00000555612 ZNF525Q8N782 197 aa6.85□□□□□ -1.31
SYNE2-220ENST00000555612 NEUROG1Q92886 237 aa6.85□□□□□ -1.31
SYNE2-220ENST00000555612 LYZL4Q96KX0 146 aa6.85□□□□□ -1.31
SYNE2-220ENST00000555612 SIGLEC5O15389 551 aa6.85□□□□□ -1.31
SYNE2-220ENST00000555612 ZNF250P15622 560 aa6.85□□□□□ -1.31
SYNE2-220ENST00000555612 OR52E5Q8NH55 327 aa6.85□□□□□ -1.31
SYNE2-220ENST00000555612 ATG101Q9BSB4 218 aa6.85□□□□□ -1.31
SYNE2-220ENST00000555612 ZFC3H1O60293 1989 aaKnown RBP6.85□□□□□ -1.31
SYNE2-220ENST00000555612 GRIFINA4D1Z8 144 aa6.85□□□□□ -1.31
SYNE2-220ENST00000555612 EFNA2O43921 213 aa6.85□□□□□ -1.31
SYNE2-220ENST00000555612 SLC25A16P16260 332 aa6.85□□□□□ -1.31
SYNE2-220ENST00000555612 MORN2Q502X0 79 aa6.85□□□□□ -1.31
SYNE2-220ENST00000555612 PAQR4Q8N4S7 273 aaPredicted RBP6.85□□□□□ -1.31
SYNE2-220ENST00000555612 NPCDR1Q9BY65 106 aa6.85□□□□□ -1.31
SYNE2-220ENST00000555612 SDF2L1Q9HCN8 221 aa6.85□□□□□ -1.31
SYNE2-220ENST00000555612 SLC25A15Q9Y619 301 aa6.85□□□□□ -1.31
SYNE2-220ENST00000555612 UPK2O00526 184 aa6.85□□□□□ -1.31
SYNE2-220ENST00000555612 YPEL1O60688 119 aa6.85□□□□□ -1.31
SYNE2-220ENST00000555612 NMBP08949 121 aa6.85□□□□□ -1.31
SYNE2-220ENST00000555612 OR9G9P0C7N8 305 aa6.85□□□□□ -1.31
SYNE2-220ENST00000555612 FAM71F2Q6NXP2 309 aa6.85□□□□□ -1.31
SYNE2-220ENST00000555612 YPEL2Q96QA6 119 aa6.85□□□□□ -1.31
SYNE2-220ENST00000555612 RARRES2Q99969 163 aa6.85□□□□□ -1.31
SYNE2-220ENST00000555612 RBFOX2O43251 390 aaKnown RBP eCLIP6.84□□□□□ -1.31
SYNE2-220ENST00000555612 ZP1P60852 638 aa6.84□□□□□ -1.31
SYNE2-220ENST00000555612 BMPERQ8N8U9 685 aa6.84□□□□□ -1.31
SYNE2-220ENST00000555612 ACACAQ13085 2346 aa6.84□□□□□ -1.31
SYNE2-220ENST00000555612 MDC1Q14676 2089 aaKnown RBP6.84□□□□□ -1.31
SYNE2-220ENST00000555612 IGHV2-26A0A0B4J1V2 119 aa6.84□□□□□ -1.31
SYNE2-220ENST00000555612 CGAP01215 116 aa6.84□□□□□ -1.31
SYNE2-220ENST00000555612 CIRBPQ14011 172 aaKnown RBP6.84□□□□□ -1.31
SYNE2-220ENST00000555612 LINC01356Q8N9X3 169 aa6.84□□□□□ -1.31
SYNE2-220ENST00000555612 BPESC1Q9GZL8 116 aa6.84□□□□□ -1.31
SYNE2-220ENST00000555612 DIRC3C9JPN6 131 aa6.84□□□□□ -1.31
SYNE2-220ENST00000555612 MT-ND6P03923 174 aa6.84□□□□□ -1.31
SYNE2-220ENST00000555612 CENPWQ5EE01 88 aa6.84□□□□□ -1.31
SYNE2-220ENST00000555612 MRAP2Q96G30 205 aa6.84□□□□□ -1.31
SYNE2-220ENST00000555612 TOMM7Q9P0U1 55 aa6.84□□□□□ -1.31
SYNE2-220ENST00000555612 THADAQ6YHU6 1953 aa6.84□□□□□ -1.31
SYNE2-220ENST00000555612 PSME4Q14997 1843 aa6.84□□□□□ -1.31
SYNE2-220ENST00000555612 CD7P09564 240 aa6.84□□□□□ -1.31
SYNE2-220ENST00000555612 ERVK11-1P61568 191 aa6.84□□□□□ -1.31
SYNE2-220ENST00000555612 RPL24P83731 157 aaKnown RBP6.84□□□□□ -1.31
SYNE2-220ENST00000555612 PRSS33Q8NF86 280 aa6.84□□□□□ -1.31
SYNE2-220ENST00000555612 RNASEH2CQ8TDP1 164 aaKnown RBP6.84□□□□□ -1.31
SYNE2-220ENST00000555612 E9PQ18 207 aa6.84□□□□□ -1.31
SYNE2-220ENST00000555612 HLA-DQA1P01909 254 aa6.84□□□□□ -1.31
SYNE2-220ENST00000555612 OR5AN1Q8NGI8 311 aa6.84□□□□□ -1.31
SYNE2-220ENST00000555612 TMEM178BH3BS89 294 aa6.84□□□□□ -1.32
SYNE2-220ENST00000555612 ZNF415Q09FC8 603 aa6.84□□□□□ -1.32
SYNE2-220ENST00000555612 LEMD1Q68G75 181 aa6.84□□□□□ -1.32
SYNE2-220ENST00000555612 OR4D5Q8NGN0 318 aa6.84□□□□□ -1.32
SYNE2-220ENST00000555612 AQP10Q96PS8 301 aa6.84□□□□□ -1.32
SYNE2-220ENST00000555612 PAM16Q9Y3D7 125 aa6.84□□□□□ -1.32
SYNE2-220ENST00000555612 TRGV4A0A0C4DH28 118 aa6.83□□□□□ -1.32
SYNE2-220ENST00000555612 MBD3L4A6NDZ8 208 aaPredicted RBP6.83□□□□□ -1.32
SYNE2-220ENST00000555612 MBD3L3A6NE82 208 aaPredicted RBP6.83□□□□□ -1.32
SYNE2-220ENST00000555612 MBD3L5A6NJ08 208 aaPredicted RBP6.83□□□□□ -1.32
SYNE2-220ENST00000555612 OTX1P32242 354 aaPredicted RBP6.83□□□□□ -1.32
SYNE2-220ENST00000555612 UQCRFS1P47985 274 aa6.83□□□□□ -1.32
SYNE2-220ENST00000555612 KIAA1644Q3SXP7 199 aa6.83□□□□□ -1.32
SYNE2-220ENST00000555612 PAPPA-AS1Q5QFB9 102 aa6.83□□□□□ -1.32
SYNE2-220ENST00000555612 MBD3L2Q8NHZ7 208 aaPredicted RBP6.83□□□□□ -1.32
SYNE2-220ENST00000555612 Q96MF0 132 aa6.83□□□□□ -1.32
SYNE2-220ENST00000555612 COL6A6A6NMZ7 2263 aa6.83□□□□□ -1.32
SYNE2-220ENST00000555612 A6NDN8 102 aa6.83□□□□□ -1.32
SYNE2-220ENST00000555612 MPTX1A8MV57 137 aa6.83□□□□□ -1.32
SYNE2-220ENST00000555612 TDGF1P13385 188 aa6.83□□□□□ -1.32
SYNE2-220ENST00000555612 LEPP41159 167 aa6.83□□□□□ -1.32
SYNE2-220ENST00000555612 PAX8Q06710 450 aa6.83□□□□□ -1.32
SYNE2-220ENST00000555612 GCSAMLQ5JQS6 135 aa6.83□□□□□ -1.32
SYNE2-220ENST00000555612 PSMG4Q5JS54 123 aa6.83□□□□□ -1.32
SYNE2-220ENST00000555612 SAMD13Q5VXD3 122 aa6.83□□□□□ -1.32
SYNE2-220ENST00000555612 HIST1H2BAQ96A08 127 aa6.83□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms