RNA–Protein interactions for RNA: ENST00000553949.1

SHMT2-209, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-209ENST00000553949 CITED1Q99966 193 aa9.55□□□□□ -0.88
SHMT2-209ENST00000553949 CITED2Q99967 270 aaPredicted RBP9.55□□□□□ -0.88
SHMT2-209ENST00000553949 RBKSQ9H477 322 aa9.55□□□□□ -0.88
SHMT2-209ENST00000553949 SLA2Q9H6Q3 261 aa9.55□□□□□ -0.88
SHMT2-209ENST00000553949 COL6A5A8TX70 2615 aa9.54□□□□□ -0.88
SHMT2-209ENST00000553949 TCRBV4S1A1TA0A5B7 111 aa9.54□□□□□ -0.88
SHMT2-209ENST00000553949 SIX6O95475 246 aa9.54□□□□□ -0.88
SHMT2-209ENST00000553949 TRGV3P03979 118 aa9.54□□□□□ -0.88
SHMT2-209ENST00000553949 RPLP1P05386 114 aaKnown RBP9.54□□□□□ -0.88
SHMT2-209ENST00000553949 DEFA4P12838 97 aa9.54□□□□□ -0.88
SHMT2-209ENST00000553949 NKX2-1P43699 371 aaPredicted RBP9.54□□□□□ -0.88
SHMT2-209ENST00000553949 TPPP2P59282 170 aa9.54□□□□□ -0.88
SHMT2-209ENST00000553949 CD83Q01151 205 aa9.54□□□□□ -0.88
SHMT2-209ENST00000553949 ID3Q02535 119 aa9.54□□□□□ -0.88
SHMT2-209ENST00000553949 ZNF114Q8NC26 417 aa9.54□□□□□ -0.88
SHMT2-209ENST00000553949 MYOZ3Q8TDC0 251 aa9.54□□□□□ -0.88
SHMT2-209ENST00000553949 DTD1Q8TEA8 209 aa9.54□□□□□ -0.88
SHMT2-209ENST00000553949 MAGT1Q9H0U3 335 aa9.54□□□□□ -0.88
SHMT2-209ENST00000553949 HEYLQ9NQ87 328 aaPredicted RBP9.54□□□□□ -0.88
SHMT2-209ENST00000553949 MGAT4CQ9UBM8 478 aa9.54□□□□□ -0.88
SHMT2-209ENST00000553949 F11RQ9Y624 299 aaKnown RBP9.54□□□□□ -0.88
SHMT2-209ENST00000553949 IGLV11-55A0A075B6I3 123 aa9.53□□□□□ -0.88
SHMT2-209ENST00000553949 TRBV9A0A0B4J1U6 114 aa9.53□□□□□ -0.88
SHMT2-209ENST00000553949 SYNGR2O43760 224 aa9.53□□□□□ -0.88
SHMT2-209ENST00000553949 MED6O75586 246 aa9.53□□□□□ -0.88
SHMT2-209ENST00000553949 SCGB1D2O95969 90 aa9.53□□□□□ -0.88
SHMT2-209ENST00000553949 SNCAP37840 140 aa9.53□□□□□ -0.88
SHMT2-209ENST00000553949 KIAA0141Q14154 515 aaPredicted RBP9.53□□□□□ -0.88
SHMT2-209ENST00000553949 KLK9Q2XQG4 91 aa9.53□□□□□ -0.88
SHMT2-209ENST00000553949 KHDC1LQ5JSQ8 128 aa9.53□□□□□ -0.88
SHMT2-209ENST00000553949 C11orf87Q6NUJ2 197 aa9.53□□□□□ -0.88
SHMT2-209ENST00000553949 OR1P1Q8NH06 330 aa9.53□□□□□ -0.88
SHMT2-209ENST00000553949 FANCD2OSQ96PS1 177 aa9.53□□□□□ -0.88
SHMT2-209ENST00000553949 P2RX4Q99571 388 aa9.53□□□□□ -0.88
SHMT2-209ENST00000553949 MED28Q9H204 178 aa9.53□□□□□ -0.88
SHMT2-209ENST00000553949 HIPK2Q9H2X6 1198 aa9.53□□□□□ -0.88
SHMT2-209ENST00000553949 ZFP57Q9NU63 452 aa9.53□□□□□ -0.88
SHMT2-209ENST00000553949 KLK9Q9UKQ9 250 aa9.53□□□□□ -0.88
SHMT2-209ENST00000553949 DMRT1Q9Y5R6 373 aa9.53□□□□□ -0.88
SHMT2-209ENST00000553949 FAM223BA6NKX1 122 aa9.52□□□□□ -0.89
SHMT2-209ENST00000553949 WRBO00258 174 aa9.52□□□□□ -0.89
SHMT2-209ENST00000553949 CYB5BO43169 146 aa9.52□□□□□ -0.89
SHMT2-209ENST00000553949 OR2J3O76001 311 aa9.52□□□□□ -0.89
SHMT2-209ENST00000553949 MBPP02686 304 aaPredicted RBP9.52□□□□□ -0.89
SHMT2-209ENST00000553949 HIST1H1BP16401 226 aaKnown RBP9.52□□□□□ -0.89
SHMT2-209ENST00000553949 HTR2BP41595 481 aa9.52□□□□□ -0.89
SHMT2-209ENST00000553949 MFAP2P55001 183 aa9.52□□□□□ -0.89
SHMT2-209ENST00000553949 H2BFSP57053 126 aa9.52□□□□□ -0.89
SHMT2-209ENST00000553949 POLR2GP62487 172 aaKnown RBP eCLIP9.52□□□□□ -0.89
SHMT2-209ENST00000553949 RPL23AP62750 156 aaKnown RBP9.52□□□□□ -0.89
SHMT2-209ENST00000553949 RHOGP84095 191 aa9.52□□□□□ -0.89
SHMT2-209ENST00000553949 IL15RAQ13261 267 aa9.52□□□□□ -0.89
SHMT2-209ENST00000553949 FCN2Q15485 313 aa9.52□□□□□ -0.89
SHMT2-209ENST00000553949 BSXQ3C1V8 233 aa9.52□□□□□ -0.89
SHMT2-209ENST00000553949 SLC25A24Q6NUK1 477 aa9.52□□□□□ -0.89
SHMT2-209ENST00000553949 SHISA2Q6UWI4 295 aa9.52□□□□□ -0.89
SHMT2-209ENST00000553949 FAM223AQ8IWN6 122 aa9.52□□□□□ -0.89
SHMT2-209ENST00000553949 NECAP1Q8NC96 275 aa9.52□□□□□ -0.89
SHMT2-209ENST00000553949 SLC24A4Q8NFF2 622 aa9.52□□□□□ -0.89
SHMT2-209ENST00000553949 OR1L6Q8NGR2 347 aa9.52□□□□□ -0.89
SHMT2-209ENST00000553949 TSSC4Q9Y5U2 329 aaPredicted RBP9.52□□□□□ -0.89
SHMT2-209ENST00000553949 DNHD1Q96M86 4753 aa9.51□□□□□ -0.89
SHMT2-209ENST00000553949 SSSCA1O60232 199 aa9.51□□□□□ -0.89
SHMT2-209ENST00000553949 RNASE2P10153 161 aaKnown RBP9.51□□□□□ -0.89
SHMT2-209ENST00000553949 IAPPP10997 89 aa9.51□□□□□ -0.89
SHMT2-209ENST00000553949 CXCL3P19876 107 aa9.51□□□□□ -0.89
SHMT2-209ENST00000553949 CDX1P47902 265 aaPredicted RBP9.51□□□□□ -0.89
SHMT2-209ENST00000553949 SUB1P53999 127 aaKnown RBP eCLIP9.51□□□□□ -0.89
SHMT2-209ENST00000553949 RRAS2P62070 204 aaPredicted RBP9.51□□□□□ -0.89
SHMT2-209ENST00000553949 DEFA5Q01523 94 aa9.51□□□□□ -0.89
SHMT2-209ENST00000553949 Q6ZNX1 250 aa9.51□□□□□ -0.89
SHMT2-209ENST00000553949 NDUFA11Q86Y39 141 aa9.51□□□□□ -0.89
SHMT2-209ENST00000553949 ZNF491Q8N8L2 437 aa9.51□□□□□ -0.89
SHMT2-209ENST00000553949 OR11H7Q8NGC8 314 aa9.51□□□□□ -0.89
SHMT2-209ENST00000553949 USMG5Q96IX5 58 aa9.51□□□□□ -0.89
SHMT2-209ENST00000553949 UBE2E2Q96LR5 201 aa9.51□□□□□ -0.89
SHMT2-209ENST00000553949 CIB3Q96Q77 187 aaPredicted RBP9.51□□□□□ -0.89
SHMT2-209ENST00000553949 NMES1Q9C002 83 aa9.51□□□□□ -0.89
SHMT2-209ENST00000553949 FBXL7Q9UJT9 491 aa9.51□□□□□ -0.89
SHMT2-209ENST00000553949 U3KQ87 197 aa9.51□□□□□ -0.89
SHMT2-209ENST00000553949 TENM1Q9UKZ4 2725 aa9.51□□□□□ -0.89
SHMT2-209ENST00000553949 TET2Q6N021 2002 aaPredicted RBP9.51□□□□□ -0.89
SHMT2-209ENST00000553949 ANK2Q01484 3957 aa9.5□□□□□ -0.89
SHMT2-209ENST00000553949 A0A0G2JLM5 398 aa9.5□□□□□ -0.89
SHMT2-209ENST00000553949 A0A1W2PRX2 142 aa9.5□□□□□ -0.89
SHMT2-209ENST00000553949 ADARB2-AS1A8MUL3 147 aa9.5□□□□□ -0.89
SHMT2-209ENST00000553949 K7EPK0 472 aa9.5□□□□□ -0.89
SHMT2-209ENST00000553949 NDUFB8O95169 186 aa9.5□□□□□ -0.89
SHMT2-209ENST00000553949 LY86O95711 162 aa9.5□□□□□ -0.89
SHMT2-209ENST00000553949 IFNA10P01566 189 aa9.5□□□□□ -0.89
SHMT2-209ENST00000553949 CYCSP99999 105 aaKnown RBP9.5□□□□□ -0.89
SHMT2-209ENST00000553949 ATP5G2Q06055 141 aa9.5□□□□□ -0.89
SHMT2-209ENST00000553949 C15orf32Q32M92 178 aa9.5□□□□□ -0.89
SHMT2-209ENST00000553949 NSUN5P1Q3KNT7 163 aa9.5□□□□□ -0.89
SHMT2-209ENST00000553949 C2orf83Q53S99 150 aa9.5□□□□□ -0.89
SHMT2-209ENST00000553949 PVRIGQ6DKI7 326 aa9.5□□□□□ -0.89
SHMT2-209ENST00000553949 C18orf65Q6ZTR6 163 aa9.5□□□□□ -0.89
SHMT2-209ENST00000553949 TMEM170AQ8WVE7 144 aa9.5□□□□□ -0.89
SHMT2-209ENST00000553949 WDR89Q96FK6 387 aaPredicted RBP9.5□□□□□ -0.89
SHMT2-209ENST00000553949 RAB40CQ96S21 281 aa9.5□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms