RNA–Protein interactions for RNA: ENST00000553289.5

SYNE2-208, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 5,261 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-208ENST00000553289 IGKV3D-15A0A087WSY6 115 aa9.68□□□□□ -0.86
SYNE2-208ENST00000553289 IGKV3-15P01624 115 aa9.68□□□□□ -0.86
SYNE2-208ENST00000553289 IGHV3-48P01763 117 aa9.68□□□□□ -0.86
SYNE2-208ENST00000553289 PAX1P15863 534 aa9.68□□□□□ -0.86
SYNE2-208ENST00000553289 WDR82Q6UXN9 313 aa9.68□□□□□ -0.86
SYNE2-208ENST00000553289 TCF23Q7RTU1 214 aa9.68□□□□□ -0.86
SYNE2-208ENST00000553289 LYZL4Q96KX0 146 aa9.68□□□□□ -0.86
SYNE2-208ENST00000553289 FOXA2Q9Y261 457 aaPredicted RBP9.68□□□□□ -0.86
SYNE2-208ENST00000553289 IGHV3OR16-12A0A075B7B8 117 aa9.68□□□□□ -0.86
SYNE2-208ENST00000553289 ZFP36L1Q07352 338 aaKnown RBP9.68□□□□□ -0.86
SYNE2-208ENST00000553289 LY6G6FQ5SQ64 297 aa9.68□□□□□ -0.86
SYNE2-208ENST00000553289 C9orf106Q8NAJ2 232 aa9.68□□□□□ -0.86
SYNE2-208ENST00000553289 KCNS1Q96KK3 526 aa9.68□□□□□ -0.86
SYNE2-208ENST00000553289 TRAV24A0A0B4J272 114 aa9.68□□□□□ -0.86
SYNE2-208ENST00000553289 H7C2G1 150 aa9.68□□□□□ -0.86
SYNE2-208ENST00000553289 SMIM13P0DJ93 91 aa9.68□□□□□ -0.86
SYNE2-208ENST00000553289 CCL20P78556 96 aa9.68□□□□□ -0.86
SYNE2-208ENST00000553289 ID3Q02535 119 aa9.68□□□□□ -0.86
SYNE2-208ENST00000553289 ATP5G3P48201 142 aa9.67□□□□□ -0.86
SYNE2-208ENST00000553289 FGF16O43320 207 aa9.67□□□□□ -0.86
SYNE2-208ENST00000553289 OTX1P32242 354 aaPredicted RBP9.67□□□□□ -0.86
SYNE2-208ENST00000553289 MEIG1Q5JSS6 88 aa9.67□□□□□ -0.86
SYNE2-208ENST00000553289 FAM74A4Q5TZK3 123 aa9.67□□□□□ -0.86
SYNE2-208ENST00000553289 MYOFQ9NZM1 2061 aa9.67□□□□□ -0.86
SYNE2-208ENST00000553289 LOC102724200A0A096LPH7 203 aaPredicted RBP9.67□□□□□ -0.86
SYNE2-208ENST00000553289 FAM181BA6NEQ2 426 aa9.67□□□□□ -0.86
SYNE2-208ENST00000553289 SAA1P0DJI8 122 aaPredicted RBP9.67□□□□□ -0.86
SYNE2-208ENST00000553289 HOXA5P20719 270 aa9.67□□□□□ -0.86
SYNE2-208ENST00000553289 LEMD1Q68G75 181 aa9.67□□□□□ -0.86
SYNE2-208ENST00000553289 MIR17HGQ75NE6 70 aa9.67□□□□□ -0.86
SYNE2-208ENST00000553289 TBL2Q9Y4P3 447 aaKnown RBP9.67□□□□□ -0.86
SYNE2-208ENST00000553289 SAA2-SAA4A0A096LPE2 208 aa9.67□□□□□ -0.86
SYNE2-208ENST00000553289 C1QTNF9BB2RNN3 333 aa9.67□□□□□ -0.86
SYNE2-208ENST00000553289 SAA2P0DJI9 122 aaPredicted RBP9.67□□□□□ -0.86
SYNE2-208ENST00000553289 RSPO4Q2I0M5 234 aaPredicted RBP9.67□□□□□ -0.86
SYNE2-208ENST00000553289 MORN2Q502X0 79 aa9.67□□□□□ -0.86
SYNE2-208ENST00000553289 SLC50A1Q9BRV3 221 aa9.67□□□□□ -0.86
SYNE2-208ENST00000553289 ALKBH7Q9BT30 221 aaPredicted RBP9.67□□□□□ -0.86
SYNE2-208ENST00000553289 CRYGSP22914 178 aa9.66□□□□□ -0.86
SYNE2-208ENST00000553289 RPL23P62829 140 aaKnown RBP9.66□□□□□ -0.86
SYNE2-208ENST00000553289 TNFRSF14Q92956 283 aa9.66□□□□□ -0.86
SYNE2-208ENST00000553289 RNASE6Q93091 150 aaKnown RBP9.66□□□□□ -0.86
SYNE2-208ENST00000553289 Q9H3A6 140 aa9.66□□□□□ -0.86
SYNE2-208ENST00000553289 A0A1W2PRE2 83 aa9.66□□□□□ -0.86
SYNE2-208ENST00000553289 SLC17A3O00476 420 aa9.66□□□□□ -0.86
SYNE2-208ENST00000553289 APOHP02749 345 aaPredicted RBP9.66□□□□□ -0.86
SYNE2-208ENST00000553289 KLK15Q9H2R5 256 aa9.66□□□□□ -0.86
SYNE2-208ENST00000553289 TPRP12270 2363 aaKnown RBP9.66□□□□□ -0.86
SYNE2-208ENST00000553289 OTOFQ9HC10 1997 aa9.66□□□□□ -0.86
SYNE2-208ENST00000553289 IGKV1D-13A0A0B4J2D9 117 aa9.66□□□□□ -0.86
SYNE2-208ENST00000553289 NBR2O15453 112 aa9.66□□□□□ -0.86
SYNE2-208ENST00000553289 IGKV1-13P0DP09 117 aa9.66□□□□□ -0.86
SYNE2-208ENST00000553289 CSRP1P21291 193 aaKnown RBP9.66□□□□□ -0.86
SYNE2-208ENST00000553289 FOXA3P55318 350 aaPredicted RBP9.66□□□□□ -0.86
SYNE2-208ENST00000553289 PAQR4Q8N4S7 273 aaPredicted RBP9.66□□□□□ -0.86
SYNE2-208ENST00000553289 TTC9CQ8N5M4 171 aa9.66□□□□□ -0.86
SYNE2-208ENST00000553289 A0A0G2JMZ2 1700 aa9.66□□□□□ -0.86
SYNE2-208ENST00000553289 LRRC37A2A6NM11 1700 aa9.66□□□□□ -0.86
SYNE2-208ENST00000553289 GAS1P54826 345 aa9.66□□□□□ -0.86
SYNE2-208ENST00000553289 CD69Q07108 199 aa9.66□□□□□ -0.86
SYNE2-208ENST00000553289 ORMDL3Q8N138 153 aa9.66□□□□□ -0.86
SYNE2-208ENST00000553289 PDCD11Q14690 1871 aaKnown RBP9.65□□□□□ -0.86
SYNE2-208ENST00000553289 CELA3BP08861 270 aa9.65□□□□□ -0.86
SYNE2-208ENST00000553289 FAM201AQ5SY85 155 aa9.65□□□□□ -0.86
SYNE2-208ENST00000553289 FER1L6-AS1Q8NA97 138 aa9.65□□□□□ -0.86
SYNE2-208ENST00000553289 TMEM170AQ8WVE7 144 aa9.65□□□□□ -0.86
SYNE2-208ENST00000553289 WNT10AQ9GZT5 417 aa9.65□□□□□ -0.86
SYNE2-208ENST00000553289 PRDM6Q9NQX0 595 aa9.65□□□□□ -0.86
SYNE2-208ENST00000553289 OSTCQ9NRP0 149 aa9.65□□□□□ -0.86
SYNE2-208ENST00000553289 F11RQ9Y624 299 aaKnown RBP9.65□□□□□ -0.86
SYNE2-208ENST00000553289 ZNF324BQ6AW86 544 aaPredicted RBP9.65□□□□□ -0.86
SYNE2-208ENST00000553289 MTURNQ8N3F0 131 aa9.65□□□□□ -0.86
SYNE2-208ENST00000553289 ABHD17AQ96GS6 310 aa9.65□□□□□ -0.86
SYNE2-208ENST00000553289 ASCL2Q99929 193 aa9.65□□□□□ -0.86
SYNE2-208ENST00000553289 TNFRSF18Q9Y5U5 241 aa9.65□□□□□ -0.86
SYNE2-208ENST00000553289 PRR32B1ATL7 298 aa9.65□□□□□ -0.86
SYNE2-208ENST00000553289 TMEM133Q9H2Q1 129 aa9.65□□□□□ -0.86
SYNE2-208ENST00000553289 SEMA5BQ9P283 1151 aa9.65□□□□□ -0.86
SYNE2-208ENST00000553289 LCTP09848 1927 aa9.65□□□□□ -0.86
SYNE2-208ENST00000553289 SPTBP11277 2137 aa9.65□□□□□ -0.87
SYNE2-208ENST00000553289 NTN3O00634 580 aaPredicted RBP9.65□□□□□ -0.87
SYNE2-208ENST00000553289 SCGB1A1P11684 91 aa9.65□□□□□ -0.87
SYNE2-208ENST00000553289 PRCDQ00LT1 54 aa9.65□□□□□ -0.87
SYNE2-208ENST00000553289 CASP8AP2Q9UKL3 1982 aa9.64□□□□□ -0.87
SYNE2-208ENST00000553289 GPR183P32249 361 aa9.64□□□□□ -0.87
SYNE2-208ENST00000553289 FAM166AQ6J272 317 aa9.64□□□□□ -0.87
SYNE2-208ENST00000553289 ATOH7Q8N100 152 aa9.64□□□□□ -0.87
SYNE2-208ENST00000553289 FAM168AQ92567 244 aa9.64□□□□□ -0.87
SYNE2-208ENST00000553289 TMEM101Q96IK0 257 aa9.64□□□□□ -0.87
SYNE2-208ENST00000553289 WFIKKN1Q96NZ8 548 aa9.64□□□□□ -0.87
SYNE2-208ENST00000553289 TMEM160Q9NX00 188 aa9.64□□□□□ -0.87
SYNE2-208ENST00000553289 MBD3L1Q8WWY6 194 aa9.64□□□□□ -0.87
SYNE2-208ENST00000553289 IGHV3-35A0A0C4DH35 117 aa9.64□□□□□ -0.87
SYNE2-208ENST00000553289 IMMP2LQ96T52 175 aa9.64□□□□□ -0.87
SYNE2-208ENST00000553289 TCRBV4S1A1TA0A5B7 111 aa9.64□□□□□ -0.87
SYNE2-208ENST00000553289 SCGB3A1Q96QR1 104 aa9.64□□□□□ -0.87
SYNE2-208ENST00000553289 GFI1Q99684 422 aa9.64□□□□□ -0.87
SYNE2-208ENST00000553289 C2orf88Q9BSF0 95 aa9.64□□□□□ -0.87
SYNE2-208ENST00000553289 CTAG1AP78358 180 aa9.63□□□□□ -0.87
SYNE2-208ENST00000553289 PRDM13Q9H4Q3 707 aa9.63□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms