RNA–Protein interactions for RNA: ENST00000553011.5

PTCH1-226, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-226ENST00000553011 HSD17B13Q7Z5P4 300 aaPredicted RBP10.87□□□□□ -0.67
PTCH1-226ENST00000553011 FAM219AQ8IW50 185 aa10.87□□□□□ -0.67
PTCH1-226ENST00000553011 SLC35G3Q8N808 338 aa10.87□□□□□ -0.67
PTCH1-226ENST00000553011 DCUN1D4Q92564 292 aa10.87□□□□□ -0.67
PTCH1-226ENST00000553011 IL22RA2Q969J5 263 aa10.87□□□□□ -0.67
PTCH1-226ENST00000553011 WDR12Q9GZL7 423 aaKnown RBP10.87□□□□□ -0.67
PTCH1-226ENST00000553011 CACNG5Q9UF02 275 aa10.87□□□□□ -0.67
PTCH1-226ENST00000553011 KLK9Q9UKQ9 250 aa10.87□□□□□ -0.67
PTCH1-226ENST00000553011 S4R3C0 116 aa10.87□□□□□ -0.67
PTCH1-226ENST00000553011 SFT2D2O95562 160 aa10.86□□□□□ -0.67
PTCH1-226ENST00000553011 IGHV3-23P01764 117 aa10.86□□□□□ -0.67
PTCH1-226ENST00000553011 HOXD3P31249 432 aaPredicted RBP10.86□□□□□ -0.67
PTCH1-226ENST00000553011 MFAP2P55001 183 aa10.86□□□□□ -0.67
PTCH1-226ENST00000553011 BEAN1Q3B7T3 259 aa10.86□□□□□ -0.67
PTCH1-226ENST00000553011 ANKRD55Q3KP44 614 aa10.86□□□□□ -0.67
PTCH1-226ENST00000553011 LYZL2Q7Z4W2 148 aa10.86□□□□□ -0.67
PTCH1-226ENST00000553011 LGI3Q8N145 548 aa10.86□□□□□ -0.67
PTCH1-226ENST00000553011 DLX4Q92988 240 aaPredicted RBP10.86□□□□□ -0.67
PTCH1-226ENST00000553011 RANGRFQ9HD47 186 aaPredicted RBP10.86□□□□□ -0.67
PTCH1-226ENST00000553011 PEF1Q9UBV8 284 aaKnown RBP10.86□□□□□ -0.67
PTCH1-226ENST00000553011 MFSD2BA6NFX1 497 aa10.85□□□□□ -0.67
PTCH1-226ENST00000553011 IFNA17P01571 189 aa10.85□□□□□ -0.67
PTCH1-226ENST00000553011 SRPXP78539 464 aa10.85□□□□□ -0.67
PTCH1-226ENST00000553011 SLC25A24Q6NUK1 477 aa10.85□□□□□ -0.67
PTCH1-226ENST00000553011 OR2C3Q8N628 320 aa10.85□□□□□ -0.67
PTCH1-226ENST00000553011 PDCD10Q9BUL8 212 aa10.85□□□□□ -0.67
PTCH1-226ENST00000553011 PLEKHA3Q9HB20 300 aa10.85□□□□□ -0.67
PTCH1-226ENST00000553011 CTNNBIP1Q9NSA3 81 aaPredicted RBP10.85□□□□□ -0.67
PTCH1-226ENST00000553011 TBC1D24Q9ULP9 559 aa10.85□□□□□ -0.67
PTCH1-226ENST00000553011 F11RQ9Y624 299 aaKnown RBP10.85□□□□□ -0.67
PTCH1-226ENST00000553011 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP10.84□□□□□ -0.67
PTCH1-226ENST00000553011 A0A0B4J2A0 478 aa10.84□□□□□ -0.67
PTCH1-226ENST00000553011 BMPR1BO00238 502 aa10.84□□□□□ -0.67
PTCH1-226ENST00000553011 OVOL1O14753 267 aa10.84□□□□□ -0.67
PTCH1-226ENST00000553011 DUS4LO95620 317 aaKnown RBP10.84□□□□□ -0.67
PTCH1-226ENST00000553011 ANXA7P20073 488 aaKnown RBP10.84□□□□□ -0.67
PTCH1-226ENST00000553011 ZP3P21754 424 aa10.84□□□□□ -0.67
PTCH1-226ENST00000553011 UBE2MP61081 183 aaKnown RBP10.84□□□□□ -0.67
PTCH1-226ENST00000553011 DEFA6Q01524 100 aa10.84□□□□□ -0.67
PTCH1-226ENST00000553011 AARDQ4LEZ3 155 aa10.84□□□□□ -0.67
PTCH1-226ENST00000553011 NMSQ5H8A3 153 aa10.84□□□□□ -0.67
PTCH1-226ENST00000553011 KPRPQ5T749 579 aaPredicted RBP10.84□□□□□ -0.67
PTCH1-226ENST00000553011 CCDC140Q96MF4 163 aa10.84□□□□□ -0.67
PTCH1-226ENST00000553011 MCRIP2Q9BUT9 160 aaKnown RBP10.84□□□□□ -0.67
PTCH1-226ENST00000553011 SHPKQ9UHJ6 478 aa10.84□□□□□ -0.67
PTCH1-226ENST00000553011 IGHV3-21A0A0B4J1V1 117 aa10.83□□□□□ -0.68
PTCH1-226ENST00000553011 C9orf170A2RU37 121 aa10.83□□□□□ -0.68
PTCH1-226ENST00000553011 SEC14L6B5MCN3 397 aa10.83□□□□□ -0.68
PTCH1-226ENST00000553011 PPP5D1E7EU14 171 aa10.83□□□□□ -0.68
PTCH1-226ENST00000553011 UPK1BO75841 260 aa10.83□□□□□ -0.68
PTCH1-226ENST00000553011 NXPH3O95157 252 aa10.83□□□□□ -0.68
PTCH1-226ENST00000553011 PRB2P02812 416 aaPredicted RBP10.83□□□□□ -0.68
PTCH1-226ENST00000553011 SULT1A3P0DMM9 295 aa10.83□□□□□ -0.68
PTCH1-226ENST00000553011 SULT1A4P0DMN0 295 aa10.83□□□□□ -0.68
PTCH1-226ENST00000553011 HOXA1P49639 335 aaPredicted RBP10.83□□□□□ -0.68
PTCH1-226ENST00000553011 ERHP84090 104 aaKnown RBP10.83□□□□□ -0.68
PTCH1-226ENST00000553011 IFITM3Q01628 133 aa10.83□□□□□ -0.68
PTCH1-226ENST00000553011 LRTM2Q8N967 370 aa10.83□□□□□ -0.68
PTCH1-226ENST00000553011 OR1P1Q8NH06 330 aa10.83□□□□□ -0.68
PTCH1-226ENST00000553011 EEF1AKMT3Q96AZ1 226 aa10.83□□□□□ -0.68
PTCH1-226ENST00000553011 THYN1Q9P016 225 aa10.83□□□□□ -0.68
PTCH1-226ENST00000553011 INS-IGF2F8WCM5 200 aa10.82□□□□□ -0.68
PTCH1-226ENST00000553011 CYB5BO43169 146 aa10.82□□□□□ -0.68
PTCH1-226ENST00000553011 HLA-AP01891 365 aaKnown RBP10.82□□□□□ -0.68
PTCH1-226ENST00000553011 TCRBP04435 133 aa10.82□□□□□ -0.68
PTCH1-226ENST00000553011 OR4E1P0C645 316 aa10.82□□□□□ -0.68
PTCH1-226ENST00000553011 SPCS3P61009 180 aa10.82□□□□□ -0.68
PTCH1-226ENST00000553011 DHRS2Q13268 280 aa10.82□□□□□ -0.68
PTCH1-226ENST00000553011 ASAH1Q13510 395 aa10.82□□□□□ -0.68
PTCH1-226ENST00000553011 SMCO1Q147U7 214 aa10.82□□□□□ -0.68
PTCH1-226ENST00000553011 CLEC19AQ6UXS0 136 aa10.82□□□□□ -0.68
PTCH1-226ENST00000553011 ZNF114Q8NC26 417 aa10.82□□□□□ -0.68
PTCH1-226ENST00000553011 ZNF502Q8TBZ5 544 aa10.82□□□□□ -0.68
PTCH1-226ENST00000553011 CXorf58Q96LI9 332 aa10.82□□□□□ -0.68
PTCH1-226ENST00000553011 C20orf85Q9H1P6 137 aa10.82□□□□□ -0.68
PTCH1-226ENST00000553011 TRAV6A0A075B6T7 132 aa10.81□□□□□ -0.68
PTCH1-226ENST00000553011 DUXBA0A1W2PPF3 345 aa10.81□□□□□ -0.68
PTCH1-226ENST00000553011 K7EIM0 57 aa10.81□□□□□ -0.68
PTCH1-226ENST00000553011 ARL3P36405 182 aa10.81□□□□□ -0.68
PTCH1-226ENST00000553011 SYNJ2BPP57105 145 aa10.81□□□□□ -0.68
PTCH1-226ENST00000553011 KRTAP10-11P60412 298 aa10.81□□□□□ -0.68
PTCH1-226ENST00000553011 KLF5Q13887 457 aaPredicted RBP10.81□□□□□ -0.68
PTCH1-226ENST00000553011 RPEL1Q2QD12 228 aa10.81□□□□□ -0.68
PTCH1-226ENST00000553011 C4orf46Q504U0 113 aa10.81□□□□□ -0.68
PTCH1-226ENST00000553011 C9orf66Q5T8R8 295 aa10.81□□□□□ -0.68
PTCH1-226ENST00000553011 C11orf87Q6NUJ2 197 aa10.81□□□□□ -0.68
PTCH1-226ENST00000553011 LYG2Q86SG7 212 aa10.81□□□□□ -0.68
PTCH1-226ENST00000553011 OR1L6Q8NGR2 347 aa10.81□□□□□ -0.68
PTCH1-226ENST00000553011 OR52E5Q8NH55 327 aa10.81□□□□□ -0.68
PTCH1-226ENST00000553011 VN1R17PQ8TDU5 208 aa10.81□□□□□ -0.68
PTCH1-226ENST00000553011 MISP3Q96FF7 219 aa10.81□□□□□ -0.68
PTCH1-226ENST00000553011 GPR61Q9BZJ8 451 aa10.81□□□□□ -0.68
PTCH1-226ENST00000553011 ENY2Q9NPA8 101 aa10.81□□□□□ -0.68
PTCH1-226ENST00000553011 TRBV7-1A0A0A6YYK4 115 aa10.8□□□□□ -0.68
PTCH1-226ENST00000553011 PIGBOS1A0A0B4J2F0 54 aa10.8□□□□□ -0.68
PTCH1-226ENST00000553011 FAM240BA0A1B0GVZ2 78 aa10.8□□□□□ -0.68
PTCH1-226ENST00000553011 CEBPZOSA8MTT3 80 aa10.8□□□□□ -0.68
PTCH1-226ENST00000553011 WIPF1O43516 503 aa10.8□□□□□ -0.68
PTCH1-226ENST00000553011 HOXB5P09067 269 aa10.8□□□□□ -0.68
PTCH1-226ENST00000553011 RNASE2P10153 161 aaKnown RBP10.8□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms