RNA–Protein interactions for RNA: ENST00000545663.5

CLSTN3-216, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 533 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-216ENST00000545663 NECAP1Q8NC96 275 aa11.13□□□□□ -0.63
CLSTN3-216ENST00000545663 OR52I2Q8NH67 350 aa11.13□□□□□ -0.63
CLSTN3-216ENST00000545663 C18orf15Q96N68 181 aa11.13□□□□□ -0.63
CLSTN3-216ENST00000545663 AGMATQ9BSE5 352 aa11.13□□□□□ -0.63
CLSTN3-216ENST00000545663 RDH8Q9NYR8 311 aa11.13□□□□□ -0.63
CLSTN3-216ENST00000545663 ZNF221Q9UK13 617 aa11.13□□□□□ -0.63
CLSTN3-216ENST00000545663 MPPED1O15442 326 aa11.12□□□□□ -0.63
CLSTN3-216ENST00000545663 ADMP35318 185 aa11.12□□□□□ -0.63
CLSTN3-216ENST00000545663 FAUP35544 74 aaKnown RBP11.12□□□□□ -0.63
CLSTN3-216ENST00000545663 MEF2DQ14814 521 aa11.12□□□□□ -0.63
CLSTN3-216ENST00000545663 IGSF11Q5DX21 431 aa11.12□□□□□ -0.63
CLSTN3-216ENST00000545663 ARRDC1Q8N5I2 433 aa11.12□□□□□ -0.63
CLSTN3-216ENST00000545663 TMEM229BQ8NBD8 167 aa11.12□□□□□ -0.63
CLSTN3-216ENST00000545663 GIMAP1Q8WWP7 306 aa11.12□□□□□ -0.63
CLSTN3-216ENST00000545663 MAFIPQ8WZ33 124 aa11.12□□□□□ -0.63
CLSTN3-216ENST00000545663 RBMX2Q9Y388 322 aaKnown RBP11.12□□□□□ -0.63
CLSTN3-216ENST00000545663 OR2W1Q9Y3N9 320 aa11.12□□□□□ -0.63
CLSTN3-216ENST00000545663 RBM7Q9Y580 266 aaKnown RBP11.12□□□□□ -0.63
CLSTN3-216ENST00000545663 DEFB131BA0A096LNP1 70 aa11.11□□□□□ -0.63
CLSTN3-216ENST00000545663 IGHV4-28A0A0C4DH34 117 aa11.11□□□□□ -0.63
CLSTN3-216ENST00000545663 IGKV1-6A0A0C4DH72 117 aa11.11□□□□□ -0.63
CLSTN3-216ENST00000545663 SRRM4A7MD48 611 aaKnown RBP11.11□□□□□ -0.63
CLSTN3-216ENST00000545663 TSPAN4O14817 238 aa11.11□□□□□ -0.63
CLSTN3-216ENST00000545663 PTHLHP12272 177 aa11.11□□□□□ -0.63
CLSTN3-216ENST00000545663 MSMO1Q15800 293 aa11.11□□□□□ -0.63
CLSTN3-216ENST00000545663 RNASE10Q5GAN6 216 aaKnown RBP11.11□□□□□ -0.63
CLSTN3-216ENST00000545663 H1FOOQ8IZA3 346 aaPredicted RBP11.11□□□□□ -0.63
CLSTN3-216ENST00000545663 OR6F1Q8NGZ6 308 aa11.11□□□□□ -0.63
CLSTN3-216ENST00000545663 NDUFAF3Q9BU61 184 aa11.11□□□□□ -0.63
CLSTN3-216ENST00000545663 C5orf66Q9H5L9 145 aa11.11□□□□□ -0.63
CLSTN3-216ENST00000545663 EHFQ9NZC4 300 aa11.11□□□□□ -0.63
CLSTN3-216ENST00000545663 KLK11Q9UBX7 282 aa11.11□□□□□ -0.63
CLSTN3-216ENST00000545663 V9GYH0 126 aa11.11□□□□□ -0.63
CLSTN3-216ENST00000545663 IGKV1D-8A0A087WSZ0 117 aa11.1□□□□□ -0.63
CLSTN3-216ENST00000545663 ELOA3CA0A087WX78 387 aaPredicted RBP11.1□□□□□ -0.63
CLSTN3-216ENST00000545663 IGHV3-35A0A0C4DH35 117 aa11.1□□□□□ -0.63
CLSTN3-216ENST00000545663 MEIS3P1A6NDR6 274 aa11.1□□□□□ -0.63
CLSTN3-216ENST00000545663 CA1P00915 261 aaPredicted RBP11.1□□□□□ -0.63
CLSTN3-216ENST00000545663 CD74P04233 296 aa11.1□□□□□ -0.63
CLSTN3-216ENST00000545663 INPP1P49441 399 aa11.1□□□□□ -0.63
CLSTN3-216ENST00000545663 HERV-K104P61576 105 aa11.1□□□□□ -0.63
CLSTN3-216ENST00000545663 TSPAN5P62079 268 aa11.1□□□□□ -0.63
CLSTN3-216ENST00000545663 TAGLNQ01995 201 aaKnown RBP11.1□□□□□ -0.63
CLSTN3-216ENST00000545663 OR4A47Q6IF82 309 aa11.1□□□□□ -0.63
CLSTN3-216ENST00000545663 LPCAT3Q6P1A2 487 aa11.1□□□□□ -0.63
CLSTN3-216ENST00000545663 DHRS11Q6UWP2 260 aa11.1□□□□□ -0.63
CLSTN3-216ENST00000545663 SPATA12Q7Z6I5 190 aa11.1□□□□□ -0.63
CLSTN3-216ENST00000545663 PDPNQ86YL7 162 aa11.1□□□□□ -0.63
CLSTN3-216ENST00000545663 UBE2DNLQ8IWF7 75 aa11.1□□□□□ -0.63
CLSTN3-216ENST00000545663 WDR12Q9GZL7 423 aaKnown RBP11.1□□□□□ -0.63
CLSTN3-216ENST00000545663 C11orf54Q9H0W9 315 aaPredicted RBP11.1□□□□□ -0.63
CLSTN3-216ENST00000545663 OR1A1Q9P1Q5 309 aa11.1□□□□□ -0.63
CLSTN3-216ENST00000545663 IFNA21P01568 189 aa11.09□□□□□ -0.63
CLSTN3-216ENST00000545663 IFNA17P01571 189 aa11.09□□□□□ -0.63
CLSTN3-216ENST00000545663 AKAIN1P0CW23 69 aa11.09□□□□□ -0.63
CLSTN3-216ENST00000545663 HLA-DMAP28067 261 aa11.09□□□□□ -0.63
CLSTN3-216ENST00000545663 S100GP29377 79 aa11.09□□□□□ -0.63
CLSTN3-216ENST00000545663 FCGR2CP31995 323 aa11.09□□□□□ -0.63
CLSTN3-216ENST00000545663 HRH1P35367 487 aa11.09□□□□□ -0.63
CLSTN3-216ENST00000545663 TMEM187Q14656 261 aa11.09□□□□□ -0.63
CLSTN3-216ENST00000545663 TNXAQ16473 311 aa11.09□□□□□ -0.63
CLSTN3-216ENST00000545663 TRIQKQ629K1 86 aa11.09□□□□□ -0.63
CLSTN3-216ENST00000545663 STEAP1BQ6NZ63 245 aa11.09□□□□□ -0.63
CLSTN3-216ENST00000545663 LYSMD2Q8IV50 215 aa11.09□□□□□ -0.63
CLSTN3-216ENST00000545663 ZBTB34Q8NCN2 500 aa11.09□□□□□ -0.63
CLSTN3-216ENST00000545663 SRSF12Q8WXF0 261 aaKnown RBP11.09□□□□□ -0.63
CLSTN3-216ENST00000545663 ADTRPQ96IZ2 230 aa11.09□□□□□ -0.63
CLSTN3-216ENST00000545663 CCDC32Q9BV29 185 aa11.09□□□□□ -0.63
CLSTN3-216ENST00000545663 MRPL27Q9P0M9 148 aaKnown RBP11.09□□□□□ -0.63
CLSTN3-216ENST00000545663 DISC1C4P0D8 188 aa11.08□□□□□ -0.64
CLSTN3-216ENST00000545663 RAB3DO95716 219 aa11.08□□□□□ -0.64
CLSTN3-216ENST00000545663 ZNF79Q15937 498 aa11.08□□□□□ -0.64
CLSTN3-216ENST00000545663 C12orf74Q32Q52 190 aa11.08□□□□□ -0.64
CLSTN3-216ENST00000545663 FAM209BQ5JX69 171 aa11.08□□□□□ -0.64
CLSTN3-216ENST00000545663 IDO2Q6ZQW0 420 aa11.08□□□□□ -0.64
CLSTN3-216ENST00000545663 TOMM5Q8N4H5 51 aa11.08□□□□□ -0.64
CLSTN3-216ENST00000545663 MARC2Q969Z3 335 aa11.08□□□□□ -0.64
CLSTN3-216ENST00000545663 SRRQ9GZT4 340 aa11.08□□□□□ -0.64
CLSTN3-216ENST00000545663 CELA1Q9UNI1 258 aa11.08□□□□□ -0.64
CLSTN3-216ENST00000545663 ANKRD20A5PA0PJZ0 165 aa11.07□□□□□ -0.64
CLSTN3-216ENST00000545663 PPYP01298 95 aa11.07□□□□□ -0.64
CLSTN3-216ENST00000545663 APOA2P02652 100 aa11.07□□□□□ -0.64
CLSTN3-216ENST00000545663 PMP2P02689 132 aa11.07□□□□□ -0.64
CLSTN3-216ENST00000545663 FCER2P06734 321 aa11.07□□□□□ -0.64
CLSTN3-216ENST00000545663 NFYAP23511 347 aaPredicted RBP11.07□□□□□ -0.64
CLSTN3-216ENST00000545663 RFX2P48378 723 aa11.07□□□□□ -0.64
CLSTN3-216ENST00000545663 ZNF846Q147U1 533 aa11.07□□□□□ -0.64
CLSTN3-216ENST00000545663 PRSS8Q16651 343 aa11.07□□□□□ -0.64
CLSTN3-216ENST00000545663 RNASE12Q5GAN4 147 aaKnown RBP11.07□□□□□ -0.64
CLSTN3-216ENST00000545663 C10orf55Q5SWW7 151 aa11.07□□□□□ -0.64
CLSTN3-216ENST00000545663 TTC9CQ8N5M4 171 aa11.07□□□□□ -0.64
CLSTN3-216ENST00000545663 HARBI1Q96MB7 349 aa11.07□□□□□ -0.64
CLSTN3-216ENST00000545663 SCGB3A2Q96PL1 93 aa11.07□□□□□ -0.64
CLSTN3-216ENST00000545663 PRRT1Q99946 306 aa11.07□□□□□ -0.64
CLSTN3-216ENST00000545663 OR2D2Q9H210 308 aa11.07□□□□□ -0.64
CLSTN3-216ENST00000545663 SLC35D1Q9NTN3 355 aa11.07□□□□□ -0.64
CLSTN3-216ENST00000545663 SCP2D1Q9UJQ7 156 aa11.07□□□□□ -0.64
CLSTN3-216ENST00000545663 CENPXA8MT69 81 aa11.06□□□□□ -0.64
CLSTN3-216ENST00000545663 CD3DP04234 171 aa11.06□□□□□ -0.64
CLSTN3-216ENST00000545663 PPP5CP53041 499 aa11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms