RNA–Protein interactions for RNA: ENST00000541410.1

CLIP1-216, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,379 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-216ENST00000541410 HSPB1P04792 205 aaKnown RBP11.69□□□□□ -0.54
CLIP1-216ENST00000541410 AGAP20933 346 aa11.69□□□□□ -0.54
CLIP1-216ENST00000541410 LGALS4P56470 323 aa11.69□□□□□ -0.54
CLIP1-216ENST00000541410 ACOT6Q3I5F7 207 aaPredicted RBP11.69□□□□□ -0.54
CLIP1-216ENST00000541410 VMA21Q3ZAQ7 101 aa11.69□□□□□ -0.54
CLIP1-216ENST00000541410 KHDC3LQ587J8 217 aa11.69□□□□□ -0.54
CLIP1-216ENST00000541410 PCGF1Q9BSM1 259 aa11.69□□□□□ -0.54
CLIP1-216ENST00000541410 LSM4Q9Y4Z0 139 aaKnown RBP11.69□□□□□ -0.54
CLIP1-216ENST00000541410 MBP02144 154 aa11.68□□□□□ -0.54
CLIP1-216ENST00000541410 TNXAQ16473 311 aa11.68□□□□□ -0.54
CLIP1-216ENST00000541410 TEPPQ6URK8 271 aa11.68□□□□□ -0.54
CLIP1-216ENST00000541410 BEND2Q8NDZ0 799 aa11.68□□□□□ -0.54
CLIP1-216ENST00000541410 OR2T6Q8NHC8 308 aa11.68□□□□□ -0.54
CLIP1-216ENST00000541410 ZNF462Q96JM2 2506 aa11.68□□□□□ -0.54
CLIP1-216ENST00000541410 TIMM23O14925 209 aa11.68□□□□□ -0.54
CLIP1-216ENST00000541410 UBE2G2P60604 165 aa11.68□□□□□ -0.54
CLIP1-216ENST00000541410 B2MP61769 119 aa11.68□□□□□ -0.54
CLIP1-216ENST00000541410 FBLN7Q53RD9 439 aa11.68□□□□□ -0.54
CLIP1-216ENST00000541410 HCP5Q6MZN7 132 aa11.68□□□□□ -0.54
CLIP1-216ENST00000541410 STPG3Q8N7X2 389 aa11.68□□□□□ -0.54
CLIP1-216ENST00000541410 VSTM2AQ8TAG5 236 aa11.68□□□□□ -0.54
CLIP1-216ENST00000541410 TNFRSF14Q92956 283 aa11.68□□□□□ -0.54
CLIP1-216ENST00000541410 BBC3Q96PG8 261 aaPredicted RBP11.68□□□□□ -0.54
CLIP1-216ENST00000541410 GGACTQ9BVM4 153 aa11.68□□□□□ -0.54
CLIP1-216ENST00000541410 BPESC1Q9GZL8 116 aa11.68□□□□□ -0.54
CLIP1-216ENST00000541410 FBXL15Q9H469 300 aa11.68□□□□□ -0.54
CLIP1-216ENST00000541410 DOPEY1Q5JWR5 2465 aa11.67□□□□□ -0.54
CLIP1-216ENST00000541410 LOC105371267A0A1B0GV96 52 aa11.67□□□□□ -0.54
CLIP1-216ENST00000541410 A0A1W2PPI3 338 aa11.67□□□□□ -0.54
CLIP1-216ENST00000541410 A0A1W2PPV4 95 aa11.67□□□□□ -0.54
CLIP1-216ENST00000541410 CYB5BO43169 146 aa11.67□□□□□ -0.54
CLIP1-216ENST00000541410 OPRK1P41145 380 aa11.67□□□□□ -0.54
CLIP1-216ENST00000541410 KIAA0141Q14154 515 aaPredicted RBP11.67□□□□□ -0.54
CLIP1-216ENST00000541410 GAMTQ14353 236 aa11.67□□□□□ -0.54
CLIP1-216ENST00000541410 SPATA31B1PQ5VZV4 182 aa11.67□□□□□ -0.54
CLIP1-216ENST00000541410 C17orf50Q8WW18 174 aa11.67□□□□□ -0.54
CLIP1-216ENST00000541410 ACY3Q96HD9 319 aa11.67□□□□□ -0.54
CLIP1-216ENST00000541410 LPAR2Q9HBW0 351 aa11.67□□□□□ -0.54
CLIP1-216ENST00000541410 FAM208BQ5VWN6 2430 aa11.67□□□□□ -0.54
CLIP1-216ENST00000541410 EPG5Q9HCE0 2579 aa11.67□□□□□ -0.54
CLIP1-216ENST00000541410 PAGE4O60829 102 aa11.67□□□□□ -0.54
CLIP1-216ENST00000541410 ACTL6BO94805 426 aa11.67□□□□□ -0.54
CLIP1-216ENST00000541410 EFNA4P52798 201 aa11.67□□□□□ -0.54
CLIP1-216ENST00000541410 SSBP2P81877 361 aaPredicted RBP11.67□□□□□ -0.54
CLIP1-216ENST00000541410 ERHP84090 104 aaKnown RBP11.67□□□□□ -0.54
CLIP1-216ENST00000541410 ABHD5Q8WTS1 349 aa11.67□□□□□ -0.54
CLIP1-216ENST00000541410 SEPSECSQ9HD40 501 aaKnown RBP11.67□□□□□ -0.54
CLIP1-216ENST00000541410 METTL1Q9UBP6 276 aaKnown RBP11.67□□□□□ -0.54
CLIP1-216ENST00000541410 IGHV3-21A0A0B4J1V1 117 aa11.66□□□□□ -0.54
CLIP1-216ENST00000541410 ZNF727A8MUV8 499 aa11.66□□□□□ -0.54
CLIP1-216ENST00000541410 LY6LH3BQJ8 138 aa11.66□□□□□ -0.54
CLIP1-216ENST00000541410 FCN1O00602 326 aa11.66□□□□□ -0.54
CLIP1-216ENST00000541410 MPDU1O75352 247 aa11.66□□□□□ -0.54
CLIP1-216ENST00000541410 AREGP15514 252 aa11.66□□□□□ -0.54
CLIP1-216ENST00000541410 CD81P60033 236 aa11.66□□□□□ -0.54
CLIP1-216ENST00000541410 PSG5Q15238 335 aa11.66□□□□□ -0.54
CLIP1-216ENST00000541410 ZNF674Q2M3X9 581 aa11.66□□□□□ -0.54
CLIP1-216ENST00000541410 C2orf83Q53S99 150 aa11.66□□□□□ -0.54
CLIP1-216ENST00000541410 FAM90A2PQ658T7 463 aa11.66□□□□□ -0.54
CLIP1-216ENST00000541410 SMDT1Q9H4I9 107 aa11.66□□□□□ -0.54
CLIP1-216ENST00000541410 VAX2Q9UIW0 290 aa11.66□□□□□ -0.54
CLIP1-216ENST00000541410 HTR1DP28221 377 aa11.65□□□□□ -0.54
CLIP1-216ENST00000541410 LGALS7P47929 136 aa11.65□□□□□ -0.54
CLIP1-216ENST00000541410 SSX2Q16385 188 aa11.65□□□□□ -0.54
CLIP1-216ENST00000541410 BSXQ3C1V8 233 aa11.65□□□□□ -0.54
CLIP1-216ENST00000541410 RUSC1-AS1Q66K80 236 aa11.65□□□□□ -0.54
CLIP1-216ENST00000541410 VMO1Q7Z5L0 202 aa11.65□□□□□ -0.54
CLIP1-216ENST00000541410 P2RX4Q99571 388 aa11.65□□□□□ -0.54
CLIP1-216ENST00000541410 FNDC4Q9H6D8 234 aaPredicted RBP11.65□□□□□ -0.54
CLIP1-216ENST00000541410 RBP4P02753 201 aa11.65□□□□□ -0.54
CLIP1-216ENST00000541410 ARL14EPLP0DKL9 152 aa11.65□□□□□ -0.54
CLIP1-216ENST00000541410 PLGLAQ15195 96 aa11.65□□□□□ -0.54
CLIP1-216ENST00000541410 OR4F5Q8NH21 305 aa11.65□□□□□ -0.54
CLIP1-216ENST00000541410 OR4F4Q96R69 305 aa11.65□□□□□ -0.54
CLIP1-216ENST00000541410 SIGLEC9Q9Y336 463 aa11.65□□□□□ -0.54
CLIP1-216ENST00000541410 CELSR2Q9HCU4 2923 aa11.65□□□□□ -0.54
CLIP1-216ENST00000541410 OR10J1P30954 320 aa11.64□□□□□ -0.55
CLIP1-216ENST00000541410 MEF2BQ02080 365 aaPredicted RBP11.64□□□□□ -0.55
CLIP1-216ENST00000541410 PRSS8Q16651 343 aa11.64□□□□□ -0.55
CLIP1-216ENST00000541410 TPTE2P1Q5T6R2 138 aa11.64□□□□□ -0.55
CLIP1-216ENST00000541410 DYNAPQ8N1N2 210 aa11.64□□□□□ -0.55
CLIP1-216ENST00000541410 OR4A5Q8NH83 315 aa11.64□□□□□ -0.55
CLIP1-216ENST00000541410 RPUSD4Q96CM3 377 aaKnown RBP11.64□□□□□ -0.55
CLIP1-216ENST00000541410 MRPL36Q9P0J6 103 aaKnown RBP11.64□□□□□ -0.55
CLIP1-216ENST00000541410 AMMECR1Q9Y4X0 333 aaPredicted RBP11.64□□□□□ -0.55
CLIP1-216ENST00000541410 FOXH1O75593 365 aa11.64□□□□□ -0.55
CLIP1-216ENST00000541410 IFNA1P01562 189 aa11.64□□□□□ -0.55
CLIP1-216ENST00000541410 IGHV2-5P01817 119 aa11.64□□□□□ -0.55
CLIP1-216ENST00000541410 TAGLN2P37802 199 aaKnown RBP11.64□□□□□ -0.55
CLIP1-216ENST00000541410 PSMB3P49720 205 aa11.64□□□□□ -0.55
CLIP1-216ENST00000541410 CD69Q07108 199 aa11.64□□□□□ -0.55
CLIP1-216ENST00000541410 SLC35E3Q7Z769 313 aa11.64□□□□□ -0.55
CLIP1-216ENST00000541410 NIPSNAP3BQ9BS92 247 aa11.64□□□□□ -0.55
CLIP1-216ENST00000541410 SMCO4Q9NRQ5 59 aa11.64□□□□□ -0.55
CLIP1-216ENST00000541410 DPM3Q9P2X0 92 aa11.64□□□□□ -0.55
CLIP1-216ENST00000541410 ABCA2Q9BZC7 2435 aa11.64□□□□□ -0.55
CLIP1-216ENST00000541410 A0A1W2PN81 502 aa11.63□□□□□ -0.55
CLIP1-216ENST00000541410 IGHV4-39P01824 125 aa11.63□□□□□ -0.55
CLIP1-216ENST00000541410 PRTN3P24158 256 aa11.63□□□□□ -0.55
CLIP1-216ENST00000541410 CHRNA7P36544 502 aa11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms