RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 COQ4Q9Y3A0 265 aa1.02□□□□□ -2.25
CD44-238ENST00000534296 RBM7Q9Y580 266 aaKnown RBP1.02□□□□□ -2.25
CD44-238ENST00000534296 MUC2Q02817 5179 aa1.02□□□□□ -2.25
CD44-238ENST00000534296 CELSR3Q9NYQ7 3312 aa1.01□□□□□ -2.25
CD44-238ENST00000534296 MED1Q15648 1581 aaPredicted RBP1.01□□□□□ -2.25
CD44-238ENST00000534296 SNAPC4Q5SXM2 1469 aa1.01□□□□□ -2.25
CD44-238ENST00000534296 PLB1Q6P1J6 1458 aa1.01□□□□□ -2.25
CD44-238ENST00000534296 ABCC12Q96J65 1359 aa1.01□□□□□ -2.25
CD44-238ENST00000534296 TRBV10-2A0A0K0K1G8 114 aa1.01□□□□□ -2.25
CD44-238ENST00000534296 A8MUN3 132 aa1.01□□□□□ -2.25
CD44-238ENST00000534296 EEF1E1-BLOC1S5C9J1V9 151 aa1.01□□□□□ -2.25
CD44-238ENST00000534296 RPP14O95059 124 aaKnown RBP1.01□□□□□ -2.25
CD44-238ENST00000534296 AHSA1O95433 338 aa1.01□□□□□ -2.25
CD44-238ENST00000534296 IGHV3-7P01780 117 aa1.01□□□□□ -2.25
CD44-238ENST00000534296 FGF6P10767 208 aa1.01□□□□□ -2.25
CD44-238ENST00000534296 RPS4Y1P22090 263 aaKnown RBP1.01□□□□□ -2.25
CD44-238ENST00000534296 AQP4P55087 323 aa1.01□□□□□ -2.25
CD44-238ENST00000534296 RAB5BP61020 215 aa1.01□□□□□ -2.25
CD44-238ENST00000534296 NNATQ16517 81 aa1.01□□□□□ -2.25
CD44-238ENST00000534296 ACSM3Q53FZ2 586 aa1.01□□□□□ -2.25
CD44-238ENST00000534296 IBA57Q5T440 356 aaKnown RBP1.01□□□□□ -2.25
CD44-238ENST00000534296 RPL22L1Q6P5R6 122 aaKnown RBP1.01□□□□□ -2.25
CD44-238ENST00000534296 LRRC25Q8N386 305 aaPredicted RBP1.01□□□□□ -2.25
CD44-238ENST00000534296 DEFB125Q8N687 156 aa1.01□□□□□ -2.25
CD44-238ENST00000534296 MNS1Q8NEH6 495 aa1.01□□□□□ -2.25
CD44-238ENST00000534296 DNAJC9Q8WXX5 260 aa1.01□□□□□ -2.25
CD44-238ENST00000534296 CCDC42Q96M95 316 aa1.01□□□□□ -2.25
CD44-238ENST00000534296 KRTAP4-1Q9BYQ7 146 aa1.01□□□□□ -2.25
CD44-238ENST00000534296 YIPF3Q9GZM5 350 aa1.01□□□□□ -2.25
CD44-238ENST00000534296 OR51I1Q9H343 314 aa1.01□□□□□ -2.25
CD44-238ENST00000534296 EFCAB1Q9HAE3 211 aa1.01□□□□□ -2.25
CD44-238ENST00000534296 IL36BQ9NZH7 164 aa1.01□□□□□ -2.25
CD44-238ENST00000534296 VPS29Q9UBQ0 182 aa1.01□□□□□ -2.25
CD44-238ENST00000534296 SNURFQ9Y675 71 aa1.01□□□□□ -2.25
CD44-238ENST00000534296 CCDC88CQ9P219 2028 aa1.01□□□□□ -2.25
CD44-238ENST00000534296 MYH11P35749 1972 aa1.01□□□□□ -2.25
CD44-238ENST00000534296 C2CD3Q4AC94 2353 aa1□□□□□ -2.25
CD44-238ENST00000534296 ADCY9O60503 1353 aa1□□□□□ -2.25
CD44-238ENST00000534296 MYO3BQ8WXR4 1341 aa1□□□□□ -2.25
CD44-238ENST00000534296 IGSF10Q6WRI0 2623 aa1□□□□□ -2.25
CD44-238ENST00000534296 TRAV14DV4A0A0A6YYC5 116 aa1□□□□□ -2.25
CD44-238ENST00000534296 IGKV3D-7A0A0C4DH55 119 aa1□□□□□ -2.25
CD44-238ENST00000534296 IGKV3OR2-268A0A0C4DH90 116 aa1□□□□□ -2.25
CD44-238ENST00000534296 CRYZL1O95825 349 aa1□□□□□ -2.25
CD44-238ENST00000534296 IFNA10P01566 189 aa1□□□□□ -2.25
CD44-238ENST00000534296 OR5G3P0C626 314 aa1□□□□□ -2.25
CD44-238ENST00000534296 DEFA4P12838 97 aa1□□□□□ -2.25
CD44-238ENST00000534296 GPX2P18283 190 aa1□□□□□ -2.25
CD44-238ENST00000534296 CCL1P22362 96 aa1□□□□□ -2.25
CD44-238ENST00000534296 HIST1H2BOP23527 126 aa1□□□□□ -2.25
CD44-238ENST00000534296 HIST1H2BBP33778 126 aa1□□□□□ -2.25
CD44-238ENST00000534296 NKX2-5P52952 324 aaPredicted RBP1□□□□□ -2.25
CD44-238ENST00000534296 HIST1H2BDP58876 126 aa1□□□□□ -2.25
CD44-238ENST00000534296 HIST1H2BCP62807 126 aa1□□□□□ -2.25
CD44-238ENST00000534296 HBA1P69905 142 aa1□□□□□ -2.25
CD44-238ENST00000534296 TNFAIP6P98066 277 aaPredicted RBP1□□□□□ -2.25
CD44-238ENST00000534296 ITGB3BPQ13352 177 aaPredicted RBP1□□□□□ -2.25
CD44-238ENST00000534296 HIST2H2BEQ16778 126 aa1□□□□□ -2.25
CD44-238ENST00000534296 ARHGAP11BQ3KRB8 267 aa1□□□□□ -2.25
CD44-238ENST00000534296 SPANXN3Q5MJ09 141 aa1□□□□□ -2.25
CD44-238ENST00000534296 HIST2H2BFQ5QNW6 126 aaPredicted RBP1□□□□□ -2.25
CD44-238ENST00000534296 SFXN4Q6P4A7 337 aa1□□□□□ -2.25
CD44-238ENST00000534296 Q6ZS49 121 aa1□□□□□ -2.25
CD44-238ENST00000534296 BPIFA4PQ86YQ2 179 aa1□□□□□ -2.25
CD44-238ENST00000534296 TRAPPC5Q8IUR0 188 aa1□□□□□ -2.25
CD44-238ENST00000534296 ANKRD29Q8N6D5 301 aa1□□□□□ -2.25
CD44-238ENST00000534296 HIST1H2BHQ93079 126 aa1□□□□□ -2.25
CD44-238ENST00000534296 SCGB3A1Q96QR1 104 aa1□□□□□ -2.25
CD44-238ENST00000534296 HIST1H2BNQ99877 126 aa1□□□□□ -2.25
CD44-238ENST00000534296 HIST1H2BMQ99879 126 aa1□□□□□ -2.25
CD44-238ENST00000534296 CMSS1Q9BQ75 279 aaKnown RBP1□□□□□ -2.25
CD44-238ENST00000534296 WDR61Q9GZS3 305 aaKnown RBP1□□□□□ -2.25
CD44-238ENST00000534296 CCDC90BQ9GZT6 254 aa1□□□□□ -2.25
CD44-238ENST00000534296 OR5AC2Q9NZP5 309 aa1□□□□□ -2.25
CD44-238ENST00000534296 CKLFQ9UBR5 152 aa1□□□□□ -2.25
CD44-238ENST00000534296 COL11A1P12107 1806 aaPredicted RBP1□□□□□ -2.25
CD44-238ENST00000534296 COL5A3P25940 1745 aaPredicted RBP1□□□□□ -2.25
CD44-238ENST00000534296 RYR1P21817 5038 aa1□□□□□ -2.25
CD44-238ENST00000534296 PRRC2BQ5JSZ5 2229 aaKnown RBP1□□□□□ -2.25
CD44-238ENST00000534296 SDK1Q7Z5N4 2213 aa1□□□□□ -2.25
CD44-238ENST00000534296 ZFYVE26Q68DK2 2539 aa0.99□□□□□ -2.25
CD44-238ENST00000534296 VCANP13611 3396 aa0.99□□□□□ -2.25
CD44-238ENST00000534296 DCCP43146 1447 aa0.99□□□□□ -2.25
CD44-238ENST00000534296 TENM4Q6N022 2769 aa0.99□□□□□ -2.25
CD44-238ENST00000534296 FLNCQ14315 2725 aa0.99□□□□□ -2.25
CD44-238ENST00000534296 IGKV3-7A0A075B6H7 116 aa0.99□□□□□ -2.25
CD44-238ENST00000534296 A0A0D9SG52 128 aa0.99□□□□□ -2.25
CD44-238ENST00000534296 A0A0J9YY10 115 aa0.99□□□□□ -2.25
CD44-238ENST00000534296 A0A1B0GX78 115 aa0.99□□□□□ -2.25
CD44-238ENST00000534296 OR51F1A6NGY5 319 aa0.99□□□□□ -2.25
CD44-238ENST00000534296 OR5F1O95221 314 aa0.99□□□□□ -2.25
CD44-238ENST00000534296 IFNA16P05015 189 aa0.99□□□□□ -2.25
CD44-238ENST00000534296 HIST1H1EP10412 219 aaKnown RBP0.99□□□□□ -2.25
CD44-238ENST00000534296 S100A4P26447 101 aaKnown RBP0.99□□□□□ -2.25
CD44-238ENST00000534296 CCL20P78556 96 aa0.99□□□□□ -2.25
CD44-238ENST00000534296 CDK5R1Q15078 307 aa0.99□□□□□ -2.25
CD44-238ENST00000534296 TPRXLQ17RH7 258 aa0.99□□□□□ -2.25
CD44-238ENST00000534296 FAM27BQ5VT28 67 aa0.99□□□□□ -2.25
CD44-238ENST00000534296 AADACL3Q5VUY0 350 aa0.99□□□□□ -2.25
CD44-238ENST00000534296 SYPL2Q5VXT5 272 aa0.99□□□□□ -2.25
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms