RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 COMPP49747 757 aaPredicted RBP16.92■□□□□ 0.3
VPS28-212ENST00000530836 SLC25A24Q6NUK1 477 aa16.92■□□□□ 0.3
VPS28-212ENST00000530836 ETV3LQ6ZN32 361 aa16.92■□□□□ 0.3
VPS28-212ENST00000530836 SCGB1C1Q8TD33 95 aa16.92■□□□□ 0.3
VPS28-212ENST00000530836 TMED6Q8WW62 240 aa16.92■□□□□ 0.3
VPS28-212ENST00000530836 TMEM147Q9BVK8 224 aa16.92■□□□□ 0.3
VPS28-212ENST00000530836 FBXL15Q9H469 300 aa16.92■□□□□ 0.3
VPS28-212ENST00000530836 TPSG1Q9NRR2 321 aa16.92■□□□□ 0.3
VPS28-212ENST00000530836 SRP14P37108 136 aaKnown RBP16.91■□□□□ 0.3
VPS28-212ENST00000530836 SUB1P53999 127 aaKnown RBP eCLIP16.91■□□□□ 0.3
VPS28-212ENST00000530836 PJVKQ0ZLH3 352 aa16.91■□□□□ 0.3
VPS28-212ENST00000530836 HNF4GQ14541 408 aa16.91■□□□□ 0.3
VPS28-212ENST00000530836 TNXAQ16473 311 aa16.91■□□□□ 0.3
VPS28-212ENST00000530836 BSXQ3C1V8 233 aa16.91■□□□□ 0.3
VPS28-212ENST00000530836 C2orf83Q53S99 150 aa16.91■□□□□ 0.3
VPS28-212ENST00000530836 RPS10-NUDT3A0A1W2PQS6 291 aa16.9■□□□□ 0.3
VPS28-212ENST00000530836 FSHBP01225 129 aa16.9■□□□□ 0.3
VPS28-212ENST00000530836 IFNA4P05014 189 aa16.9■□□□□ 0.3
VPS28-212ENST00000530836 C5orf64Q2M2E5 130 aa16.9■□□□□ 0.3
VPS28-212ENST00000530836 VWC2Q2TAL6 325 aa16.9■□□□□ 0.3
VPS28-212ENST00000530836 UQCC1Q9NVA1 299 aa16.9■□□□□ 0.3
VPS28-212ENST00000530836 FAM96BQ9Y3D0 163 aa16.9■□□□□ 0.3
VPS28-212ENST00000530836 TET2Q6N021 2002 aaPredicted RBP16.9■□□□□ 0.3
VPS28-212ENST00000530836 SETD2Q9BYW2 2564 aaPredicted RBP16.9■□□□□ 0.3
VPS28-212ENST00000530836 CA2P00918 260 aa16.89■□□□□ 0.29
VPS28-212ENST00000530836 KLF17Q5JT82 389 aaPredicted RBP16.89■□□□□ 0.29
VPS28-212ENST00000530836 HSD17B11Q8NBQ5 300 aa16.89■□□□□ 0.29
VPS28-212ENST00000530836 MXRA5Q9NR99 2828 aa16.89■□□□□ 0.29
VPS28-212ENST00000530836 CGB1A6NKQ9 187 aa16.88■□□□□ 0.29
VPS28-212ENST00000530836 FBXO24O75426 580 aa16.88■□□□□ 0.29
VPS28-212ENST00000530836 IGHV4-38-2P0DP08 117 aa16.88■□□□□ 0.29
VPS28-212ENST00000530836 SRD5A1P18405 259 aa16.88■□□□□ 0.29
VPS28-212ENST00000530836 CD24P25063 80 aa16.88■□□□□ 0.29
VPS28-212ENST00000530836 RAB5CP51148 216 aa16.88■□□□□ 0.29
VPS28-212ENST00000530836 DLK1P80370 383 aa16.88■□□□□ 0.29
VPS28-212ENST00000530836 LRRC75BQ2VPJ9 315 aa16.88■□□□□ 0.29
VPS28-212ENST00000530836 RUSC1-AS1Q66K80 236 aa16.88■□□□□ 0.29
VPS28-212ENST00000530836 ZFHX3Q15911 3703 aa16.88■□□□□ 0.29
VPS28-212ENST00000530836 TNCP24821 2201 aa16.88■□□□□ 0.29
VPS28-212ENST00000530836 NF1P21359 2839 aa16.88■□□□□ 0.29
VPS28-212ENST00000530836 FNDC10F2Z333 226 aa16.88■□□□□ 0.29
VPS28-212ENST00000530836 NMBP08949 121 aa16.88■□□□□ 0.29
VPS28-212ENST00000530836 FBP1P09467 338 aa16.88■□□□□ 0.29
VPS28-212ENST00000530836 PAX6P26367 422 aa16.88■□□□□ 0.29
VPS28-212ENST00000530836 SULT1A2P50226 295 aa16.88■□□□□ 0.29
VPS28-212ENST00000530836 OR10W1Q8NGF6 305 aa16.88■□□□□ 0.29
VPS28-212ENST00000530836 WDR61Q9GZS3 305 aaKnown RBP16.88■□□□□ 0.29
VPS28-212ENST00000530836 NAV3Q8IVL0 2385 aa16.87■□□□□ 0.29
VPS28-212ENST00000530836 NCBP2LA6PVI3 153 aaKnown RBP16.87■□□□□ 0.29
VPS28-212ENST00000530836 PRSS46E5RG02 174 aa16.87■□□□□ 0.29
VPS28-212ENST00000530836 E7EUB6 86 aa16.87■□□□□ 0.29
VPS28-212ENST00000530836 FAM157CP0CG43 387 aa16.87■□□□□ 0.29
VPS28-212ENST00000530836 RNASE2P10153 161 aaKnown RBP16.87■□□□□ 0.29
VPS28-212ENST00000530836 ATP6V0CP27449 155 aa16.87■□□□□ 0.29
VPS28-212ENST00000530836 AANATQ16613 207 aa16.87■□□□□ 0.29
VPS28-212ENST00000530836 FAM74A1Q5RGS3 127 aa16.87■□□□□ 0.29
VPS28-212ENST00000530836 C10orf55Q5SWW7 151 aa16.87■□□□□ 0.29
VPS28-212ENST00000530836 BRD3OSQ6XYD6 125 aa16.87■□□□□ 0.29
VPS28-212ENST00000530836 TMEM170AQ8WVE7 144 aa16.87■□□□□ 0.29
VPS28-212ENST00000530836 IGHV3OR16-10A0A075B7F0 116 aa16.86■□□□□ 0.29
VPS28-212ENST00000530836 A0A0U1RQK1 487 aa16.86■□□□□ 0.29
VPS28-212ENST00000530836 LINC00862A6NCI5 91 aa16.86■□□□□ 0.29
VPS28-212ENST00000530836 UMAD1C9J7I0 102 aa16.86■□□□□ 0.29
VPS28-212ENST00000530836 FGF16O43320 207 aa16.86■□□□□ 0.29
VPS28-212ENST00000530836 CNIH1O95406 144 aa16.86■□□□□ 0.29
VPS28-212ENST00000530836 OR13C7P0DN81 318 aa16.86■□□□□ 0.29
VPS28-212ENST00000530836 GNB1P62873 340 aa16.86■□□□□ 0.29
VPS28-212ENST00000530836 WT1-ASQ06250 92 aa16.86■□□□□ 0.29
VPS28-212ENST00000530836 ZNF562Q6V9R5 426 aa16.86■□□□□ 0.29
VPS28-212ENST00000530836 ZNF114Q8NC26 417 aa16.86■□□□□ 0.29
VPS28-212ENST00000530836 SRSF12Q8WXF0 261 aaKnown RBP16.86■□□□□ 0.29
VPS28-212ENST00000530836 SAT2Q96F10 170 aaPredicted RBP16.86■□□□□ 0.29
VPS28-212ENST00000530836 PSMG3Q9BT73 122 aaPredicted RBP16.86■□□□□ 0.29
VPS28-212ENST00000530836 TSPAN9O75954 239 aa16.85■□□□□ 0.29
VPS28-212ENST00000530836 RNASEH2CQ8TDP1 164 aaKnown RBP16.85■□□□□ 0.29
VPS28-212ENST00000530836 TIMM9Q9Y5J7 89 aa16.85■□□□□ 0.29
VPS28-212ENST00000530836 UBE2L5PA0A1B0GUS4 154 aa16.85■□□□□ 0.29
VPS28-212ENST00000530836 A0A1B0GW64 132 aa16.85■□□□□ 0.29
VPS28-212ENST00000530836 IGLC7A0M8Q6 106 aa16.85■□□□□ 0.29
VPS28-212ENST00000530836 TRIM77I1YAP6 450 aa16.85■□□□□ 0.29
VPS28-212ENST00000530836 FCN1O00602 326 aa16.85■□□□□ 0.29
VPS28-212ENST00000530836 MPDU1O75352 247 aa16.85■□□□□ 0.29
VPS28-212ENST00000530836 OR2G3Q8NGZ4 309 aa16.85■□□□□ 0.29
VPS28-212ENST00000530836 TAF15Q92804 592 aaKnown RBP eCLIP16.85■□□□□ 0.29
VPS28-212ENST00000530836 BLOC1S1P78537 153 aa16.84■□□□□ 0.29
VPS28-212ENST00000530836 SERF2P84101 59 aa16.84■□□□□ 0.29
VPS28-212ENST00000530836 TUSC1Q2TAM9 212 aa16.84■□□□□ 0.29
VPS28-212ENST00000530836 CACNG8Q8WXS5 425 aa16.84■□□□□ 0.29
VPS28-212ENST00000530836 RASL11BQ9BPW5 248 aa16.84■□□□□ 0.29
VPS28-212ENST00000530836 SH3BGRL3Q9H299 93 aa16.84■□□□□ 0.29
VPS28-212ENST00000530836 NPVFQ9HCQ7 196 aa16.84■□□□□ 0.29
VPS28-212ENST00000530836 MED9Q9NWA0 146 aa16.84■□□□□ 0.29
VPS28-212ENST00000530836 TEX22C9J3V5 150 aa16.83■□□□□ 0.28
VPS28-212ENST00000530836 SOX15O60248 233 aa16.83■□□□□ 0.28
VPS28-212ENST00000530836 MDKP21741 143 aaPredicted RBP16.83■□□□□ 0.28
VPS28-212ENST00000530836 SCGB2A2Q13296 93 aa16.83■□□□□ 0.28
VPS28-212ENST00000530836 FXYD3Q14802 87 aa16.83■□□□□ 0.28
VPS28-212ENST00000530836 CENPVQ7Z7K6 275 aaPredicted RBP16.83■□□□□ 0.28
VPS28-212ENST00000530836 Q8N9W7 124 aa16.83■□□□□ 0.28
VPS28-212ENST00000530836 ZNF705EA8MWA4 302 aaPredicted RBP16.82■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms