RNA–Protein interactions for RNA: ENST00000527158.2

SNRNP35-204, Transcript of small nuclear ribonucleoprotein U11/U12 subunit 35, humanhuman

TSL 1 (best)

Gene SNRNP35, Length 2,161 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP35-204ENST00000527158 NDUFA6P56556 154 aa13.12□□□□□ -0.31
SNRNP35-204ENST00000527158 LCN15Q6UWW0 184 aa13.12□□□□□ -0.31
SNRNP35-204ENST00000527158 Q8N7P7 452 aa13.12□□□□□ -0.31
SNRNP35-204ENST00000527158 OR5B3Q8NH48 314 aa13.12□□□□□ -0.31
SNRNP35-204ENST00000527158 PLEKHA3Q9HB20 300 aa13.12□□□□□ -0.31
SNRNP35-204ENST00000527158 LINC00587B1AMM8 73 aa13.11□□□□□ -0.31
SNRNP35-204ENST00000527158 TMEM250H0YL14 139 aa13.11□□□□□ -0.31
SNRNP35-204ENST00000527158 USF1P22415 310 aaPredicted RBP13.11□□□□□ -0.31
SNRNP35-204ENST00000527158 LGALS7P47929 136 aa13.11□□□□□ -0.31
SNRNP35-204ENST00000527158 PRCDQ00LT1 54 aa13.11□□□□□ -0.31
SNRNP35-204ENST00000527158 ZNF726P1Q15940 193 aa13.11□□□□□ -0.31
SNRNP35-204ENST00000527158 OR4P4Q8NGL7 312 aa13.11□□□□□ -0.31
SNRNP35-204ENST00000527158 RPEQ96AT9 228 aa13.11□□□□□ -0.31
SNRNP35-204ENST00000527158 GGACTQ9BVM4 153 aa13.11□□□□□ -0.31
SNRNP35-204ENST00000527158 NAT8Q9UHE5 227 aa13.11□□□□□ -0.31
SNRNP35-204ENST00000527158 TEX50A0A1B0GTY4 177 aa13.11□□□□□ -0.31
SNRNP35-204ENST00000527158 RRHO14718 337 aa13.11□□□□□ -0.31
SNRNP35-204ENST00000527158 PPP1R2P9O14990 202 aa13.11□□□□□ -0.31
SNRNP35-204ENST00000527158 RNF224P0DH78 156 aa13.11□□□□□ -0.31
SNRNP35-204ENST00000527158 RPL8P62917 257 aaKnown RBP13.11□□□□□ -0.31
SNRNP35-204ENST00000527158 VWC2Q2TAL6 325 aa13.11□□□□□ -0.31
SNRNP35-204ENST00000527158 VMA21Q3ZAQ7 101 aa13.11□□□□□ -0.31
SNRNP35-204ENST00000527158 COMMD5Q9GZQ3 224 aa13.11□□□□□ -0.31
SNRNP35-204ENST00000527158 MANBALQ9NQG1 85 aa13.11□□□□□ -0.31
SNRNP35-204ENST00000527158 TGIF2-C20orf24A0A0A6YYL0 155 aa13.1□□□□□ -0.31
SNRNP35-204ENST00000527158 ZNF343Q6P1L6 599 aa13.1□□□□□ -0.31
SNRNP35-204ENST00000527158 C1orf122Q6ZSJ8 110 aa13.1□□□□□ -0.31
SNRNP35-204ENST00000527158 MOB3BQ86TA1 216 aa13.1□□□□□ -0.31
SNRNP35-204ENST00000527158 SLC24A4Q8NFF2 622 aa13.1□□□□□ -0.31
SNRNP35-204ENST00000527158 OR11H6Q8NGC7 330 aa13.1□□□□□ -0.31
SNRNP35-204ENST00000527158 CCL19Q99731 98 aa13.1□□□□□ -0.31
SNRNP35-204ENST00000527158 IGHV1-3A0A0C4DH29 117 aa13.1□□□□□ -0.31
SNRNP35-204ENST00000527158 CTXND1A0A1B0GTU2 59 aa13.1□□□□□ -0.31
SNRNP35-204ENST00000527158 HIST1H2BKO60814 126 aa13.1□□□□□ -0.31
SNRNP35-204ENST00000527158 HIST1H2BJP06899 126 aa13.1□□□□□ -0.31
SNRNP35-204ENST00000527158 MYOD1P15172 320 aa13.1□□□□□ -0.31
SNRNP35-204ENST00000527158 FGF7P21781 194 aa13.1□□□□□ -0.31
SNRNP35-204ENST00000527158 HIST1H2BOP23527 126 aa13.1□□□□□ -0.31
SNRNP35-204ENST00000527158 PRTN3P24158 256 aa13.1□□□□□ -0.31
SNRNP35-204ENST00000527158 NPY1RP25929 384 aa13.1□□□□□ -0.31
SNRNP35-204ENST00000527158 HIST1H2BBP33778 126 aa13.1□□□□□ -0.31
SNRNP35-204ENST00000527158 PSMB3P49720 205 aa13.1□□□□□ -0.31
SNRNP35-204ENST00000527158 HIST1H2BDP58876 126 aa13.1□□□□□ -0.31
SNRNP35-204ENST00000527158 HIST1H2BCP62807 126 aa13.1□□□□□ -0.31
SNRNP35-204ENST00000527158 HIST2H2BEQ16778 126 aa13.1□□□□□ -0.31
SNRNP35-204ENST00000527158 HIST2H2BFQ5QNW6 126 aaPredicted RBP13.1□□□□□ -0.31
SNRNP35-204ENST00000527158 CYP2G1PQ6ZSU1 146 aa13.1□□□□□ -0.31
SNRNP35-204ENST00000527158 TMEM167AQ8TBQ9 72 aa13.1□□□□□ -0.31
SNRNP35-204ENST00000527158 HIST1H2BHQ93079 126 aa13.1□□□□□ -0.31
SNRNP35-204ENST00000527158 HIST1H2BNQ99877 126 aa13.1□□□□□ -0.31
SNRNP35-204ENST00000527158 HIST1H2BMQ99879 126 aa13.1□□□□□ -0.31
SNRNP35-204ENST00000527158 URGCP-MRPS24S4R325 110 aa13.1□□□□□ -0.31
SNRNP35-204ENST00000527158 IGHV3-72A0A0B4J1Y9 119 aa13.09□□□□□ -0.31
SNRNP35-204ENST00000527158 HTR1DP28221 377 aa13.09□□□□□ -0.31
SNRNP35-204ENST00000527158 CD1BP29016 333 aa13.09□□□□□ -0.31
SNRNP35-204ENST00000527158 PDLIM4P50479 330 aa13.09□□□□□ -0.31
SNRNP35-204ENST00000527158 KIR3DL3Q8N743 410 aa13.09□□□□□ -0.31
SNRNP35-204ENST00000527158 ZNF709Q8N972 641 aa13.09□□□□□ -0.31
SNRNP35-204ENST00000527158 BPESC1Q9GZL8 116 aa13.09□□□□□ -0.31
SNRNP35-204ENST00000527158 YIF1AO95070 293 aa13.08□□□□□ -0.31
SNRNP35-204ENST00000527158 IGLV2-23P01705 113 aa13.08□□□□□ -0.31
SNRNP35-204ENST00000527158 IGHV4-39P01824 125 aa13.08□□□□□ -0.31
SNRNP35-204ENST00000527158 ZFP36P26651 326 aaKnown RBP13.08□□□□□ -0.31
SNRNP35-204ENST00000527158 CEACAM3P40198 252 aa13.08□□□□□ -0.31
SNRNP35-204ENST00000527158 MEF2BQ02080 365 aaPredicted RBP13.08□□□□□ -0.31
SNRNP35-204ENST00000527158 OR1L8Q8NGR8 309 aa13.08□□□□□ -0.31
SNRNP35-204ENST00000527158 VSIRQ9H7M9 311 aa13.08□□□□□ -0.31
SNRNP35-204ENST00000527158 C17orf112F2Z3M2 114 aa13.08□□□□□ -0.32
SNRNP35-204ENST00000527158 LY6LH3BQJ8 138 aa13.08□□□□□ -0.32
SNRNP35-204ENST00000527158 GATCO43716 136 aaKnown RBP13.08□□□□□ -0.32
SNRNP35-204ENST00000527158 ATP5IP56385 69 aaPredicted RBP13.08□□□□□ -0.32
SNRNP35-204ENST00000527158 TMEM241Q24JQ0 296 aa13.08□□□□□ -0.32
SNRNP35-204ENST00000527158 IGFBPL1Q8WX77 278 aa13.08□□□□□ -0.32
SNRNP35-204ENST00000527158 ACTR3CQ9C0K3 210 aaPredicted RBP13.08□□□□□ -0.32
SNRNP35-204ENST00000527158 DPM3Q9P2X0 92 aa13.08□□□□□ -0.32
SNRNP35-204ENST00000527158 SLC25A17O43808 307 aa13.07□□□□□ -0.32
SNRNP35-204ENST00000527158 CA2P00918 260 aa13.07□□□□□ -0.32
SNRNP35-204ENST00000527158 TRGC2P03986 189 aa13.07□□□□□ -0.32
SNRNP35-204ENST00000527158 ZMAT5Q9UDW3 170 aaKnown RBP13.07□□□□□ -0.32
SNRNP35-204ENST00000527158 SMCO3A2RU48 225 aa13.07□□□□□ -0.32
SNRNP35-204ENST00000527158 LCN2P80188 198 aa13.07□□□□□ -0.32
SNRNP35-204ENST00000527158 TPTE2P1Q5T6R2 138 aa13.07□□□□□ -0.32
SNRNP35-204ENST00000527158 TEX45Q8NA69 505 aa13.07□□□□□ -0.32
SNRNP35-204ENST00000527158 TMEM170AQ8WVE7 144 aa13.07□□□□□ -0.32
SNRNP35-204ENST00000527158 SMIM7Q9BQ49 75 aa13.07□□□□□ -0.32
SNRNP35-204ENST00000527158 NPCDR1Q9BY65 106 aa13.07□□□□□ -0.32
SNRNP35-204ENST00000527158 NDUFA4L2Q9NRX3 87 aa13.07□□□□□ -0.32
SNRNP35-204ENST00000527158 DCHS2Q6V1P9 2916 aa13.07□□□□□ -0.32
SNRNP35-204ENST00000527158 MDKP21741 143 aaPredicted RBP13.06□□□□□ -0.32
SNRNP35-204ENST00000527158 FGF8P55075 233 aaPredicted RBP13.06□□□□□ -0.32
SNRNP35-204ENST00000527158 ELLP55199 621 aaPredicted RBP13.06□□□□□ -0.32
SNRNP35-204ENST00000527158 ERHP84090 104 aaKnown RBP13.06□□□□□ -0.32
SNRNP35-204ENST00000527158 HNF4GQ14541 408 aa13.06□□□□□ -0.32
SNRNP35-204ENST00000527158 HIST3H2BBQ8N257 126 aa13.06□□□□□ -0.32
SNRNP35-204ENST00000527158 RITA1Q96K30 269 aa13.06□□□□□ -0.32
SNRNP35-204ENST00000527158 ZNF430Q9H8G1 570 aaPredicted RBP13.06□□□□□ -0.32
SNRNP35-204ENST00000527158 SRD5A3Q9H8P0 318 aa13.06□□□□□ -0.32
SNRNP35-204ENST00000527158 PITPNC1Q9UKF7 332 aa13.06□□□□□ -0.32
SNRNP35-204ENST00000527158 WDR83OSQ9Y284 106 aa13.06□□□□□ -0.32
SNRNP35-204ENST00000527158 A0A1W2PN81 502 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms