RNA–Protein interactions for RNA: ENST00000513024.5

LIMCH1-218, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,129 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-218ENST00000513024 TPRX1Q8N7U7 411 aa7.45□□□□□ -1.22
LIMCH1-218ENST00000513024 ABHD17AQ96GS6 310 aa7.45□□□□□ -1.22
LIMCH1-218ENST00000513024 HARBI1Q96MB7 349 aa7.45□□□□□ -1.22
LIMCH1-218ENST00000513024 CACNA1GO43497 2377 aa7.45□□□□□ -1.22
LIMCH1-218ENST00000513024 EP300Q09472 2414 aaPredicted RBP7.44□□□□□ -1.22
LIMCH1-218ENST00000513024 A0A0U1RQV5 110 aa7.44□□□□□ -1.22
LIMCH1-218ENST00000513024 CEACAM18A8MTB9 384 aa7.44□□□□□ -1.22
LIMCH1-218ENST00000513024 H3BRM9 83 aa7.44□□□□□ -1.22
LIMCH1-218ENST00000513024 GZMBP10144 247 aa7.44□□□□□ -1.22
LIMCH1-218ENST00000513024 SLAQ13239 276 aa7.44□□□□□ -1.22
LIMCH1-218ENST00000513024 ZNF114Q8NC26 417 aa7.44□□□□□ -1.22
LIMCH1-218ENST00000513024 SNHG12Q9BXW3 62 aa7.44□□□□□ -1.22
LIMCH1-218ENST00000513024 RNF122Q9H9V4 155 aa7.44□□□□□ -1.22
LIMCH1-218ENST00000513024 A0A1W2PPV9 198 aa7.44□□□□□ -1.22
LIMCH1-218ENST00000513024 IZUMO1RA6ND01 250 aa7.44□□□□□ -1.22
LIMCH1-218ENST00000513024 J3QT63 122 aa7.44□□□□□ -1.22
LIMCH1-218ENST00000513024 NDUFA2O43678 99 aa7.44□□□□□ -1.22
LIMCH1-218ENST00000513024 SLC25A20O43772 301 aa7.44□□□□□ -1.22
LIMCH1-218ENST00000513024 ZIC3O60481 467 aa7.44□□□□□ -1.22
LIMCH1-218ENST00000513024 PLAUP00749 431 aa7.44□□□□□ -1.22
LIMCH1-218ENST00000513024 CD1AP06126 327 aa7.44□□□□□ -1.22
LIMCH1-218ENST00000513024 ZNF708P17019 499 aa7.44□□□□□ -1.22
LIMCH1-218ENST00000513024 CNTFRP26992 372 aa7.44□□□□□ -1.22
LIMCH1-218ENST00000513024 GCHFRP30047 84 aa7.44□□□□□ -1.22
LIMCH1-218ENST00000513024 RPL23P62829 140 aaKnown RBP7.44□□□□□ -1.22
LIMCH1-218ENST00000513024 CX3CL1P78423 397 aa7.44□□□□□ -1.22
LIMCH1-218ENST00000513024 SPTBN1Q01082 2364 aaKnown RBP7.44□□□□□ -1.22
LIMCH1-218ENST00000513024 UCP2P55851 309 aa7.44□□□□□ -1.22
LIMCH1-218ENST00000513024 KCNMB1Q16558 191 aa7.44□□□□□ -1.22
LIMCH1-218ENST00000513024 C3AR1Q16581 482 aa7.44□□□□□ -1.22
LIMCH1-218ENST00000513024 SPINK14Q6IE38 97 aa7.44□□□□□ -1.22
LIMCH1-218ENST00000513024 FAM181AQ8N9Y4 354 aa7.44□□□□□ -1.22
LIMCH1-218ENST00000513024 GPR35Q9HC97 309 aa7.44□□□□□ -1.22
LIMCH1-218ENST00000513024 MBNL3Q9NUK0 354 aaKnown RBP7.44□□□□□ -1.22
LIMCH1-218ENST00000513024 A0A1W2PQD3 144 aa7.43□□□□□ -1.22
LIMCH1-218ENST00000513024 HBDP02042 147 aa7.43□□□□□ -1.22
LIMCH1-218ENST00000513024 SCTP09683 121 aa7.43□□□□□ -1.22
LIMCH1-218ENST00000513024 C1QTNF9P0C862 333 aa7.43□□□□□ -1.22
LIMCH1-218ENST00000513024 WFDC3Q8IUB2 231 aa7.43□□□□□ -1.22
LIMCH1-218ENST00000513024 SFXN3Q9BWM7 321 aa7.43□□□□□ -1.22
LIMCH1-218ENST00000513024 NCOR1O75376 2440 aa7.43□□□□□ -1.22
LIMCH1-218ENST00000513024 ZDBF2Q9HCK1 2354 aa7.43□□□□□ -1.22
LIMCH1-218ENST00000513024 MUC21A0A0G2JKD1 596 aa7.43□□□□□ -1.22
LIMCH1-218ENST00000513024 TRBV5-5A0A0J9YX44 114 aa7.43□□□□□ -1.22
LIMCH1-218ENST00000513024 MUC21A0A140T8X8 626 aa7.43□□□□□ -1.22
LIMCH1-218ENST00000513024 K7EP13 123 aa7.43□□□□□ -1.22
LIMCH1-218ENST00000513024 NKX2-8O15522 239 aa7.43□□□□□ -1.22
LIMCH1-218ENST00000513024 ZNHIT1O43257 154 aa7.43□□□□□ -1.22
LIMCH1-218ENST00000513024 FCN3O75636 299 aa7.43□□□□□ -1.22
LIMCH1-218ENST00000513024 LIMS1P48059 325 aa7.43□□□□□ -1.22
LIMCH1-218ENST00000513024 ZP1P60852 638 aa7.43□□□□□ -1.22
LIMCH1-218ENST00000513024 CEACAM21Q3KPI0 293 aa7.43□□□□□ -1.22
LIMCH1-218ENST00000513024 MUC21Q5SSG8 566 aa7.43□□□□□ -1.22
LIMCH1-218ENST00000513024 ZNF385AQ96PM9 386 aaKnown RBP7.43□□□□□ -1.22
LIMCH1-218ENST00000513024 C5orf66Q9H5L9 145 aa7.43□□□□□ -1.22
LIMCH1-218ENST00000513024 REG1BP48304 166 aa7.43□□□□□ -1.22
LIMCH1-218ENST00000513024 Q6AWC8 147 aa7.43□□□□□ -1.22
LIMCH1-218ENST00000513024 OR51G1Q8NGK1 321 aa7.43□□□□□ -1.22
LIMCH1-218ENST00000513024 TRAV16A0A0A6YYK6 109 aaPredicted RBP7.43□□□□□ -1.22
LIMCH1-218ENST00000513024 IGKV1D-16P01601 117 aa7.43□□□□□ -1.22
LIMCH1-218ENST00000513024 ID1P41134 155 aa7.43□□□□□ -1.22
LIMCH1-218ENST00000513024 UNC119Q13432 240 aa7.43□□□□□ -1.22
LIMCH1-218ENST00000513024 NFAM1Q8NET5 270 aaPredicted RBP7.43□□□□□ -1.22
LIMCH1-218ENST00000513024 OR10J6PQ8NGY7 276 aa7.43□□□□□ -1.22
LIMCH1-218ENST00000513024 CLDND2Q8NHS1 167 aa7.43□□□□□ -1.22
LIMCH1-218ENST00000513024 KLHDC3Q9BQ90 382 aa7.43□□□□□ -1.22
LIMCH1-218ENST00000513024 TMEM242Q9NWH2 141 aa7.43□□□□□ -1.22
LIMCH1-218ENST00000513024 DOCK4Q8N1I0 1966 aa7.42□□□□□ -1.22
LIMCH1-218ENST00000513024 BRCA2P51587 3418 aa7.42□□□□□ -1.22
LIMCH1-218ENST00000513024 A0A087X0K7 114 aa7.42□□□□□ -1.22
LIMCH1-218ENST00000513024 SHISA3A0PJX4 238 aa7.42□□□□□ -1.22
LIMCH1-218ENST00000513024 M0R2P5 195 aa7.42□□□□□ -1.22
LIMCH1-218ENST00000513024 LOXL3P58215 753 aa7.42□□□□□ -1.22
LIMCH1-218ENST00000513024 CT83Q5H943 113 aa7.42□□□□□ -1.22
LIMCH1-218ENST00000513024 TNFRSF19Q9NS68 423 aa7.42□□□□□ -1.22
LIMCH1-218ENST00000513024 ZNF236Q9UL36 1845 aa7.42□□□□□ -1.22
LIMCH1-218ENST00000513024 TRIOBPQ9H2D6 2365 aa7.42□□□□□ -1.22
LIMCH1-218ENST00000513024 IGHV5-10-1A0A0J9YXX1 117 aa7.42□□□□□ -1.22
LIMCH1-218ENST00000513024 UPK3AO75631 287 aa7.42□□□□□ -1.22
LIMCH1-218ENST00000513024 IGHV2-70P01814 119 aa7.42□□□□□ -1.22
LIMCH1-218ENST00000513024 CCL4P13236 92 aa7.42□□□□□ -1.22
LIMCH1-218ENST00000513024 DSCR9P59020 149 aa7.42□□□□□ -1.22
LIMCH1-218ENST00000513024 RNF182Q8N6D2 247 aa7.42□□□□□ -1.22
LIMCH1-218ENST00000513024 PHLDA1Q8WV24 401 aaPredicted RBP7.42□□□□□ -1.22
LIMCH1-218ENST00000513024 PPDPFLQ8WWR9 84 aa7.42□□□□□ -1.22
LIMCH1-218ENST00000513024 CHCHD1Q96BP2 118 aaKnown RBP7.42□□□□□ -1.22
LIMCH1-218ENST00000513024 MARS2Q96GW9 593 aaKnown RBP7.42□□□□□ -1.22
LIMCH1-218ENST00000513024 C9orf172C9J069 976 aa7.42□□□□□ -1.22
LIMCH1-218ENST00000513024 GREM1O60565 184 aa7.42□□□□□ -1.22
LIMCH1-218ENST00000513024 GATAD1Q8WUU5 269 aa7.42□□□□□ -1.22
LIMCH1-218ENST00000513024 COQ2Q96H96 371 aa7.42□□□□□ -1.22
LIMCH1-218ENST00000513024 MRPL32Q9BYC8 188 aaKnown RBP7.42□□□□□ -1.22
LIMCH1-218ENST00000513024 MYLKQ15746 1914 aa7.42□□□□□ -1.22
LIMCH1-218ENST00000513024 NYNRINQ9P2P1 1898 aaKnown RBP7.42□□□□□ -1.22
LIMCH1-218ENST00000513024 MSGN1A6NI15 193 aa7.42□□□□□ -1.22
LIMCH1-218ENST00000513024 FSTP19883 344 aa7.42□□□□□ -1.22
LIMCH1-218ENST00000513024 IL11P20809 199 aa7.42□□□□□ -1.22
LIMCH1-218ENST00000513024 EVI2AP22794 236 aa7.42□□□□□ -1.22
LIMCH1-218ENST00000513024 ETDBQ3ZM63 59 aa7.42□□□□□ -1.22
LIMCH1-218ENST00000513024 NRN1LQ496H8 165 aa7.42□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms