RNA–Protein interactions for RNA: ENST00000513016.5

VCAN-209, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 8,483 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-209ENST00000513016 ZNF818PQ6ZRF7 136 aa3.54□□□□□ -1.84
VCAN-209ENST00000513016 SRSF8Q9BRL6 282 aaKnown RBP3.54□□□□□ -1.84
VCAN-209ENST00000513016 TRAV9-2A0A087WT02 112 aa3.54□□□□□ -1.84
VCAN-209ENST00000513016 A0A087WX48 190 aa3.54□□□□□ -1.84
VCAN-209ENST00000513016 LOC102724200A0A096LPH7 203 aaPredicted RBP3.54□□□□□ -1.84
VCAN-209ENST00000513016 DPRXA6NFQ7 191 aa3.54□□□□□ -1.84
VCAN-209ENST00000513016 FABP5P3A8MUU1 101 aa3.54□□□□□ -1.84
VCAN-209ENST00000513016 GCM2O75603 506 aaPredicted RBP3.54□□□□□ -1.84
VCAN-209ENST00000513016 SAA1P0DJI8 122 aaPredicted RBP3.54□□□□□ -1.84
VCAN-209ENST00000513016 P2RY4P51582 365 aa3.54□□□□□ -1.84
VCAN-209ENST00000513016 TAS2R60P59551 318 aa3.54□□□□□ -1.84
VCAN-209ENST00000513016 TMEM187Q14656 261 aa3.54□□□□□ -1.84
VCAN-209ENST00000513016 AANATQ16613 207 aa3.54□□□□□ -1.84
VCAN-209ENST00000513016 TMEM42Q69YG0 159 aa3.54□□□□□ -1.84
VCAN-209ENST00000513016 CIARTQ8N365 385 aaPredicted RBP3.54□□□□□ -1.84
VCAN-209ENST00000513016 OR13C6PQ8NH95 151 aa3.54□□□□□ -1.84
VCAN-209ENST00000513016 FBLIM1Q8WUP2 373 aa3.54□□□□□ -1.84
VCAN-209ENST00000513016 RGP1Q92546 391 aaPredicted RBP3.54□□□□□ -1.84
VCAN-209ENST00000513016 IGHV1-69DA0A0B4J2H0 117 aa3.54□□□□□ -1.84
VCAN-209ENST00000513016 E7EQL1 145 aa3.54□□□□□ -1.84
VCAN-209ENST00000513016 C1QL1O75973 258 aa3.54□□□□□ -1.84
VCAN-209ENST00000513016 IGHV1-69P01742 117 aa3.54□□□□□ -1.84
VCAN-209ENST00000513016 GCHFRP30047 84 aa3.54□□□□□ -1.84
VCAN-209ENST00000513016 UBE2E1P51965 193 aa3.54□□□□□ -1.84
VCAN-209ENST00000513016 DEFB113Q30KQ7 82 aa3.54□□□□□ -1.84
VCAN-209ENST00000513016 TMEM144Q7Z5S9 345 aa3.54□□□□□ -1.84
VCAN-209ENST00000513016 DMRTA2Q96SC8 542 aa3.54□□□□□ -1.84
VCAN-209ENST00000513016 PSMG3Q9BT73 122 aaPredicted RBP3.54□□□□□ -1.84
VCAN-209ENST00000513016 BET1LQ9NYM9 111 aa3.54□□□□□ -1.84
VCAN-209ENST00000513016 KIAA1217Q5T5P2 1943 aa3.53□□□□□ -1.84
VCAN-209ENST00000513016 TRBV20OR9-2A0A075B6H5 130 aa3.53□□□□□ -1.84
VCAN-209ENST00000513016 PHOX2AO14813 284 aa3.53□□□□□ -1.84
VCAN-209ENST00000513016 EIF3GO75821 320 aaKnown RBP eCLIP3.53□□□□□ -1.84
VCAN-209ENST00000513016 ZNF525Q8N782 197 aa3.53□□□□□ -1.84
VCAN-209ENST00000513016 OR52E5Q8NH55 327 aa3.53□□□□□ -1.84
VCAN-209ENST00000513016 RMI2Q96E14 147 aa3.53□□□□□ -1.84
VCAN-209ENST00000513016 FMC1Q96HJ9 113 aa3.53□□□□□ -1.84
VCAN-209ENST00000513016 MIXL1Q9H2W2 232 aa3.53□□□□□ -1.84
VCAN-209ENST00000513016 A0A0G2JMZ2 1700 aa3.53□□□□□ -1.84
VCAN-209ENST00000513016 LRRC37A2A6NM11 1700 aa3.53□□□□□ -1.84
VCAN-209ENST00000513016 RBMY1BA6NDE4 496 aaKnown RBP3.53□□□□□ -1.84
VCAN-209ENST00000513016 RBMY1EA6NEQ0 496 aaKnown RBP3.53□□□□□ -1.84
VCAN-209ENST00000513016 RBMY1DP0C7P1 496 aaKnown RBP3.53□□□□□ -1.84
VCAN-209ENST00000513016 RBMY1A1P0DJD3 496 aaKnown RBP3.53□□□□□ -1.84
VCAN-209ENST00000513016 RBMY1CP0DJD4 496 aa3.53□□□□□ -1.84
VCAN-209ENST00000513016 ASCL4Q6XD76 172 aa3.53□□□□□ -1.84
VCAN-209ENST00000513016 ZNF497Q6ZNH5 498 aa3.53□□□□□ -1.84
VCAN-209ENST00000513016 ZCCHC24Q8N2G6 241 aaKnown RBP3.53□□□□□ -1.84
VCAN-209ENST00000513016 TMEM158Q8WZ71 300 aa3.53□□□□□ -1.84
VCAN-209ENST00000513016 SOX21Q9Y651 276 aaPredicted RBP3.53□□□□□ -1.84
VCAN-209ENST00000513016 A6NDN8 102 aa3.53□□□□□ -1.84
VCAN-209ENST00000513016 IFITM10A6NMD0 228 aa3.53□□□□□ -1.84
VCAN-209ENST00000513016 NDUFB4O95168 129 aa3.53□□□□□ -1.84
VCAN-209ENST00000513016 PTBP3O95758 552 aaKnown RBP3.53□□□□□ -1.84
VCAN-209ENST00000513016 HLA-DQB1P01920 261 aa3.53□□□□□ -1.84
VCAN-209ENST00000513016 UCP1P25874 307 aa3.53□□□□□ -1.84
VCAN-209ENST00000513016 VKORC1L1Q8N0U8 176 aa3.53□□□□□ -1.84
VCAN-209ENST00000513016 PGLYRP4Q96LB8 373 aa3.53□□□□□ -1.84
VCAN-209ENST00000513016 SAA2-SAA4A0A096LPE2 208 aa3.53□□□□□ -1.84
VCAN-209ENST00000513016 HSPB1P04792 205 aaKnown RBP3.53□□□□□ -1.84
VCAN-209ENST00000513016 SAA2P0DJI9 122 aaPredicted RBP3.53□□□□□ -1.84
VCAN-209ENST00000513016 CCL1P22362 96 aa3.53□□□□□ -1.84
VCAN-209ENST00000513016 EFNB3Q15768 340 aa3.53□□□□□ -1.84
VCAN-209ENST00000513016 TMEM200BQ69YZ2 307 aa3.53□□□□□ -1.84
VCAN-209ENST00000513016 RNF125Q96EQ8 232 aa3.53□□□□□ -1.84
VCAN-209ENST00000513016 PEF1Q9UBV8 284 aaKnown RBP3.53□□□□□ -1.84
VCAN-209ENST00000513016 TRBV6-7A0A0A0MS04 114 aa3.53□□□□□ -1.84
VCAN-209ENST00000513016 CD7P09564 240 aa3.53□□□□□ -1.84
VCAN-209ENST00000513016 ZNF250P15622 560 aa3.53□□□□□ -1.84
VCAN-209ENST00000513016 PKIGQ9Y2B9 76 aa3.53□□□□□ -1.84
VCAN-209ENST00000513016 ZNF256Q9Y2P7 627 aaPredicted RBP3.53□□□□□ -1.84
VCAN-209ENST00000513016 TRAV24A0A0B4J272 114 aa3.53□□□□□ -1.84
VCAN-209ENST00000513016 IGHV1-3A0A0C4DH29 117 aa3.53□□□□□ -1.84
VCAN-209ENST00000513016 ZNF815PA8K554 130 aa3.53□□□□□ -1.84
VCAN-209ENST00000513016 C17orf98A8MV24 154 aa3.53□□□□□ -1.84
VCAN-209ENST00000513016 LINC01619G3V211 115 aa3.53□□□□□ -1.84
VCAN-209ENST00000513016 CIDEAO60543 219 aa3.53□□□□□ -1.84
VCAN-209ENST00000513016 CNTFRP26992 372 aa3.53□□□□□ -1.84
VCAN-209ENST00000513016 SIGLEC15Q6ZMC9 328 aa3.53□□□□□ -1.84
VCAN-209ENST00000513016 NABP1Q96AH0 204 aa3.53□□□□□ -1.84
VCAN-209ENST00000513016 FOCADQ5VW36 1801 aa3.53□□□□□ -1.85
VCAN-209ENST00000513016 RBBP6Q7Z6E9 1792 aaKnown RBP3.53□□□□□ -1.85
VCAN-209ENST00000513016 TRAV8-6A0A0B4J262 113 aa3.52□□□□□ -1.85
VCAN-209ENST00000513016 M0R381 172 aa3.52□□□□□ -1.85
VCAN-209ENST00000513016 SLC25A20O43772 301 aa3.52□□□□□ -1.85
VCAN-209ENST00000513016 ATP5LO75964 103 aa3.52□□□□□ -1.85
VCAN-209ENST00000513016 SRSF6Q13247 344 aaKnown RBP3.52□□□□□ -1.85
VCAN-209ENST00000513016 ZNF474Q6S9Z5 364 aaPredicted RBP3.52□□□□□ -1.85
VCAN-209ENST00000513016 BRD3OSQ6XYD6 125 aa3.52□□□□□ -1.85
VCAN-209ENST00000513016 C9orf139Q6ZV77 190 aa3.52□□□□□ -1.85
VCAN-209ENST00000513016 RFLNBQ8N5W9 214 aa3.52□□□□□ -1.85
VCAN-209ENST00000513016 KIR3DL3Q8N743 410 aa3.52□□□□□ -1.85
VCAN-209ENST00000513016 FAM110DQ8TAY7 271 aaPredicted RBP3.52□□□□□ -1.85
VCAN-209ENST00000513016 PLPPR1Q8TBJ4 325 aa3.52□□□□□ -1.85
VCAN-209ENST00000513016 TBX15Q96SF7 602 aa3.52□□□□□ -1.85
VCAN-209ENST00000513016 SPOCK3Q9BQ16 436 aa3.52□□□□□ -1.85
VCAN-209ENST00000513016 TRBV9A0A0B4J1U6 114 aa3.52□□□□□ -1.85
VCAN-209ENST00000513016 CRYBB3P26998 211 aa3.52□□□□□ -1.85
VCAN-209ENST00000513016 RPL29P47914 159 aaKnown RBP3.52□□□□□ -1.85
VCAN-209ENST00000513016 C5orf64Q2M2E5 130 aa3.52□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms