RNA–Protein interactions for RNA: ENST00000509454.5

LIMCH1-210, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,506 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-210ENST00000509454 CTRB2Q6GPI1 263 aa8.85□□□□□ -0.99
LIMCH1-210ENST00000509454 ETV3LQ6ZN32 361 aa8.85□□□□□ -0.99
LIMCH1-210ENST00000509454 LYZL2Q7Z4W2 148 aa8.85□□□□□ -0.99
LIMCH1-210ENST00000509454 OR1S1Q8NH92 325 aa8.85□□□□□ -0.99
LIMCH1-210ENST00000509454 NUDT15Q9NV35 164 aa8.85□□□□□ -0.99
LIMCH1-210ENST00000509454 TBC1D24Q9ULP9 559 aa8.85□□□□□ -0.99
LIMCH1-210ENST00000509454 S4R3C0 116 aa8.85□□□□□ -0.99
LIMCH1-210ENST00000509454 IGHV4OR15-8A0A075B7B6 117 aa8.85□□□□□ -0.99
LIMCH1-210ENST00000509454 A0A087WW49 117 aa8.85□□□□□ -0.99
LIMCH1-210ENST00000509454 A0A0B4J2A0 478 aa8.85□□□□□ -0.99
LIMCH1-210ENST00000509454 C9orf170A2RU37 121 aa8.85□□□□□ -0.99
LIMCH1-210ENST00000509454 CEBPZOSA8MTT3 80 aa8.85□□□□□ -0.99
LIMCH1-210ENST00000509454 LINC01619G3V211 115 aa8.85□□□□□ -0.99
LIMCH1-210ENST00000509454 CRYGCP07315 174 aa8.85□□□□□ -0.99
LIMCH1-210ENST00000509454 HOXB5P09067 269 aa8.85□□□□□ -0.99
LIMCH1-210ENST00000509454 OR4E1P0C645 316 aa8.85□□□□□ -0.99
LIMCH1-210ENST00000509454 OR8U8P0C7N1 319 aa8.85□□□□□ -0.99
LIMCH1-210ENST00000509454 SNCAP37840 140 aa8.85□□□□□ -0.99
LIMCH1-210ENST00000509454 ERHP84090 104 aaKnown RBP8.85□□□□□ -0.99
LIMCH1-210ENST00000509454 Q6ZRM9 215 aa8.85□□□□□ -0.99
LIMCH1-210ENST00000509454 ZNF429Q86V71 674 aa8.85□□□□□ -0.99
LIMCH1-210ENST00000509454 COQ8AQ8NI60 647 aa8.85□□□□□ -0.99
LIMCH1-210ENST00000509454 THYN1Q9P016 225 aa8.85□□□□□ -0.99
LIMCH1-210ENST00000509454 SHPKQ9UHJ6 478 aa8.85□□□□□ -0.99
LIMCH1-210ENST00000509454 NDUFB8O95169 186 aa8.84□□□□□ -0.99
LIMCH1-210ENST00000509454 HSPB1P04792 205 aaKnown RBP8.84□□□□□ -0.99
LIMCH1-210ENST00000509454 H2AFB2P0C5Z0 115 aa8.84□□□□□ -0.99
LIMCH1-210ENST00000509454 SLURP1P55000 103 aa8.84□□□□□ -0.99
LIMCH1-210ENST00000509454 RUNX1Q01196 453 aa8.84□□□□□ -0.99
LIMCH1-210ENST00000509454 DHRS2Q13268 280 aa8.84□□□□□ -0.99
LIMCH1-210ENST00000509454 SMCO1Q147U7 214 aa8.84□□□□□ -0.99
LIMCH1-210ENST00000509454 LYG2Q86SG7 212 aa8.84□□□□□ -0.99
LIMCH1-210ENST00000509454 LINC00482Q8N8I6 264 aa8.84□□□□□ -0.99
LIMCH1-210ENST00000509454 EEF1AKMT3Q96AZ1 226 aa8.84□□□□□ -0.99
LIMCH1-210ENST00000509454 MISP3Q96FF7 219 aa8.84□□□□□ -0.99
LIMCH1-210ENST00000509454 P2RX4Q99571 388 aa8.84□□□□□ -0.99
LIMCH1-210ENST00000509454 TRBV9A0A0B4J1U6 114 aa8.83□□□□□ -1
LIMCH1-210ENST00000509454 IGHV3-21A0A0B4J1V1 117 aa8.83□□□□□ -1
LIMCH1-210ENST00000509454 DUXBA0A1W2PPF3 345 aa8.83□□□□□ -1
LIMCH1-210ENST00000509454 BRI3O95415 125 aa8.83□□□□□ -1
LIMCH1-210ENST00000509454 IFNA21P01568 189 aa8.83□□□□□ -1
LIMCH1-210ENST00000509454 IGLL1P15814 213 aa8.83□□□□□ -1
LIMCH1-210ENST00000509454 SPCS3P61009 180 aa8.83□□□□□ -1
LIMCH1-210ENST00000509454 IFITM3Q01628 133 aa8.83□□□□□ -1
LIMCH1-210ENST00000509454 C1QL4Q86Z23 238 aa8.83□□□□□ -1
LIMCH1-210ENST00000509454 OR2C3Q8N628 320 aa8.83□□□□□ -1
LIMCH1-210ENST00000509454 UXS1Q8NBZ7 420 aa8.83□□□□□ -1
LIMCH1-210ENST00000509454 OR52B4Q8NGK2 314 aa8.83□□□□□ -1
LIMCH1-210ENST00000509454 FANCD2OSQ96PS1 177 aa8.83□□□□□ -1
LIMCH1-210ENST00000509454 RANGRFQ9HD47 186 aaPredicted RBP8.83□□□□□ -1
LIMCH1-210ENST00000509454 HEYLQ9NQ87 328 aaPredicted RBP8.83□□□□□ -1
LIMCH1-210ENST00000509454 PEF1Q9UBV8 284 aaKnown RBP8.83□□□□□ -1
LIMCH1-210ENST00000509454 F11RQ9Y624 299 aaKnown RBP8.83□□□□□ -1
LIMCH1-210ENST00000509454 IGLV11-55A0A075B6I3 123 aa8.82□□□□□ -1
LIMCH1-210ENST00000509454 SUB1P53999 127 aaKnown RBP eCLIP8.82□□□□□ -1
LIMCH1-210ENST00000509454 RPEL1Q2QD12 228 aa8.82□□□□□ -1
LIMCH1-210ENST00000509454 GGNBP1Q5YKI7 109 aa8.82□□□□□ -1
LIMCH1-210ENST00000509454 ZNF343Q6P1L6 599 aa8.82□□□□□ -1
LIMCH1-210ENST00000509454 OR1L6Q8NGR2 347 aa8.82□□□□□ -1
LIMCH1-210ENST00000509454 PINX1Q96BK5 328 aaKnown RBP8.82□□□□□ -1
LIMCH1-210ENST00000509454 RCC1LQ96I51 464 aaKnown RBP8.82□□□□□ -1
LIMCH1-210ENST00000509454 CXorf58Q96LI9 332 aa8.82□□□□□ -1
LIMCH1-210ENST00000509454 SEC22CQ9BRL7 303 aa8.82□□□□□ -1
LIMCH1-210ENST00000509454 A0A1B0GU03 582 aa8.81□□□□□ -1
LIMCH1-210ENST00000509454 MFSD2BA6NFX1 497 aa8.81□□□□□ -1
LIMCH1-210ENST00000509454 PPP5D1E7EU14 171 aa8.81□□□□□ -1
LIMCH1-210ENST00000509454 DUS4LO95620 317 aaKnown RBP8.81□□□□□ -1
LIMCH1-210ENST00000509454 TRBV12-3P01733 135 aa8.81□□□□□ -1
LIMCH1-210ENST00000509454 ZP3P21754 424 aa8.81□□□□□ -1
LIMCH1-210ENST00000509454 HOXD3P31249 432 aaPredicted RBP8.81□□□□□ -1
LIMCH1-210ENST00000509454 FHL3Q13643 280 aa8.81□□□□□ -1
LIMCH1-210ENST00000509454 OXLD1Q5BKU9 147 aa8.81□□□□□ -1
LIMCH1-210ENST00000509454 NMSQ5H8A3 153 aa8.81□□□□□ -1
LIMCH1-210ENST00000509454 CLEC19AQ6UXS0 136 aa8.81□□□□□ -1
LIMCH1-210ENST00000509454 LRTM2Q8N967 370 aa8.81□□□□□ -1
LIMCH1-210ENST00000509454 UBAC2Q8NBM4 344 aa8.81□□□□□ -1
LIMCH1-210ENST00000509454 OR1P1Q8NH06 330 aa8.81□□□□□ -1
LIMCH1-210ENST00000509454 DCUN1D4Q92564 292 aa8.81□□□□□ -1
LIMCH1-210ENST00000509454 MCRIP2Q9BUT9 160 aaKnown RBP8.81□□□□□ -1
LIMCH1-210ENST00000509454 HIPK2Q9H2X6 1198 aa8.81□□□□□ -1
LIMCH1-210ENST00000509454 ZC4H2Q9NQZ6 224 aa8.81□□□□□ -1
LIMCH1-210ENST00000509454 CACFD1Q9UGQ2 172 aa8.81□□□□□ -1
LIMCH1-210ENST00000509454 TMED3Q9Y3Q3 217 aa8.81□□□□□ -1
LIMCH1-210ENST00000509454 MGAM2Q2M2H8 2515 aa8.81□□□□□ -1
LIMCH1-210ENST00000509454 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP8.8□□□□□ -1
LIMCH1-210ENST00000509454 SEC14L6B5MCN3 397 aa8.8□□□□□ -1
LIMCH1-210ENST00000509454 G3V4G9 280 aa8.8□□□□□ -1
LIMCH1-210ENST00000509454 OVOL1O14753 267 aa8.8□□□□□ -1
LIMCH1-210ENST00000509454 ADAP1O75689 374 aa8.8□□□□□ -1
LIMCH1-210ENST00000509454 ARL3P36405 182 aa8.8□□□□□ -1
LIMCH1-210ENST00000509454 Q56UQ5 140 aa8.8□□□□□ -1
LIMCH1-210ENST00000509454 PLET1Q6UQ28 207 aa8.8□□□□□ -1
LIMCH1-210ENST00000509454 NRARPQ7Z6K4 114 aa8.8□□□□□ -1
LIMCH1-210ENST00000509454 OR52E5Q8NH55 327 aa8.8□□□□□ -1
LIMCH1-210ENST00000509454 DLX4Q92988 240 aaPredicted RBP8.8□□□□□ -1
LIMCH1-210ENST00000509454 RBKSQ9H477 322 aa8.8□□□□□ -1
LIMCH1-210ENST00000509454 DMRT1Q9Y5R6 373 aa8.8□□□□□ -1
LIMCH1-210ENST00000509454 NOTCH3Q9UM47 2321 aa8.8□□□□□ -1
LIMCH1-210ENST00000509454 TRBV7-1A0A0A6YYK4 115 aa8.8□□□□□ -1
LIMCH1-210ENST00000509454 FAM25EA8MYX2 175 aa8.8□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms