RNA–Protein interactions for RNA: ENST00000506941.1

NPHP4-210, Transcript of nephrocystin 4, humanhuman

TSL 4

Gene NPHP4, Length 570 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-210ENST00000506941 TBC1D24Q9ULP9 559 aa14□□□□□ -0.17
NPHP4-210ENST00000506941 DHFRP00374 187 aa13.99□□□□□ -0.17
NPHP4-210ENST00000506941 ANXA3P12429 323 aa13.99□□□□□ -0.17
NPHP4-210ENST00000506941 DEFA4P12838 97 aa13.99□□□□□ -0.17
NPHP4-210ENST00000506941 VAMP1P23763 118 aa13.99□□□□□ -0.17
NPHP4-210ENST00000506941 MECP2P51608 486 aaKnown RBP13.99□□□□□ -0.17
NPHP4-210ENST00000506941 AARDQ4LEZ3 155 aa13.99□□□□□ -0.17
NPHP4-210ENST00000506941 LYZL2Q7Z4W2 148 aa13.99□□□□□ -0.17
NPHP4-210ENST00000506941 DPF1Q92782 380 aa13.99□□□□□ -0.17
NPHP4-210ENST00000506941 RCC1LQ96I51 464 aaKnown RBP13.99□□□□□ -0.17
NPHP4-210ENST00000506941 CACNG5Q9UF02 275 aa13.99□□□□□ -0.17
NPHP4-210ENST00000506941 A0A0B4J2A0 478 aa13.98□□□□□ -0.17
NPHP4-210ENST00000506941 SFT2D2O95562 160 aa13.98□□□□□ -0.17
NPHP4-210ENST00000506941 HIST1H1BP16401 226 aaKnown RBP13.98□□□□□ -0.17
NPHP4-210ENST00000506941 SRPXP78539 464 aa13.98□□□□□ -0.17
NPHP4-210ENST00000506941 IFITM3Q01628 133 aa13.98□□□□□ -0.17
NPHP4-210ENST00000506941 BEAN1Q3B7T3 259 aa13.98□□□□□ -0.17
NPHP4-210ENST00000506941 NMSQ5H8A3 153 aa13.98□□□□□ -0.17
NPHP4-210ENST00000506941 LGI3Q8N145 548 aa13.98□□□□□ -0.17
NPHP4-210ENST00000506941 OR2C3Q8N628 320 aa13.98□□□□□ -0.17
NPHP4-210ENST00000506941 DCUN1D4Q92564 292 aa13.98□□□□□ -0.17
NPHP4-210ENST00000506941 DLX4Q92988 240 aaPredicted RBP13.98□□□□□ -0.17
NPHP4-210ENST00000506941 SHPKQ9UHJ6 478 aa13.98□□□□□ -0.17
NPHP4-210ENST00000506941 F11RQ9Y624 299 aaKnown RBP13.98□□□□□ -0.17
NPHP4-210ENST00000506941 S4R3C0 116 aa13.98□□□□□ -0.17
NPHP4-210ENST00000506941 MFSD2BA6NFX1 497 aa13.97□□□□□ -0.17
NPHP4-210ENST00000506941 UPK1BO75841 260 aa13.97□□□□□ -0.17
NPHP4-210ENST00000506941 IGHV3-23P01764 117 aa13.97□□□□□ -0.17
NPHP4-210ENST00000506941 ANXA7P20073 488 aaKnown RBP13.97□□□□□ -0.17
NPHP4-210ENST00000506941 HOXD3P31249 432 aaPredicted RBP13.97□□□□□ -0.17
NPHP4-210ENST00000506941 UBE2MP61081 183 aaKnown RBP13.97□□□□□ -0.17
NPHP4-210ENST00000506941 CCDC140Q96MF4 163 aa13.97□□□□□ -0.17
NPHP4-210ENST00000506941 PLEKHA3Q9HB20 300 aa13.97□□□□□ -0.17
NPHP4-210ENST00000506941 RANGRFQ9HD47 186 aaPredicted RBP13.97□□□□□ -0.17
NPHP4-210ENST00000506941 PEF1Q9UBV8 284 aaKnown RBP13.97□□□□□ -0.17
NPHP4-210ENST00000506941 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP13.96□□□□□ -0.17
NPHP4-210ENST00000506941 IFNA17P01571 189 aa13.96□□□□□ -0.17
NPHP4-210ENST00000506941 ASAH1Q13510 395 aa13.96□□□□□ -0.17
NPHP4-210ENST00000506941 KPRPQ5T749 579 aaPredicted RBP13.96□□□□□ -0.17
NPHP4-210ENST00000506941 LRTM2Q8N967 370 aa13.96□□□□□ -0.17
NPHP4-210ENST00000506941 ZNF114Q8NC26 417 aa13.96□□□□□ -0.17
NPHP4-210ENST00000506941 C20orf85Q9H1P6 137 aa13.96□□□□□ -0.17
NPHP4-210ENST00000506941 CTNNBIP1Q9NSA3 81 aaPredicted RBP13.96□□□□□ -0.17
NPHP4-210ENST00000506941 C9orf170A2RU37 121 aa13.95□□□□□ -0.18
NPHP4-210ENST00000506941 BMPR1BO00238 502 aa13.95□□□□□ -0.18
NPHP4-210ENST00000506941 HLA-AP01891 365 aaKnown RBP13.95□□□□□ -0.18
NPHP4-210ENST00000506941 TCRBP04435 133 aa13.95□□□□□ -0.18
NPHP4-210ENST00000506941 OR4E1P0C645 316 aa13.95□□□□□ -0.18
NPHP4-210ENST00000506941 SULT1A3P0DMM9 295 aa13.95□□□□□ -0.18
NPHP4-210ENST00000506941 SULT1A4P0DMN0 295 aa13.95□□□□□ -0.18
NPHP4-210ENST00000506941 DHRS2Q13268 280 aa13.95□□□□□ -0.18
NPHP4-210ENST00000506941 SLC25A24Q6NUK1 477 aa13.95□□□□□ -0.18
NPHP4-210ENST00000506941 PDCD10Q9BUL8 212 aa13.95□□□□□ -0.18
NPHP4-210ENST00000506941 DUXBA0A1W2PPF3 345 aa13.94□□□□□ -0.18
NPHP4-210ENST00000506941 PPP5D1E7EU14 171 aa13.94□□□□□ -0.18
NPHP4-210ENST00000506941 INS-IGF2F8WCM5 200 aa13.94□□□□□ -0.18
NPHP4-210ENST00000506941 OVOL1O14753 267 aa13.94□□□□□ -0.18
NPHP4-210ENST00000506941 NXPH3O95157 252 aa13.94□□□□□ -0.18
NPHP4-210ENST00000506941 DUS4LO95620 317 aaKnown RBP13.94□□□□□ -0.18
NPHP4-210ENST00000506941 SPCS3P61009 180 aa13.94□□□□□ -0.18
NPHP4-210ENST00000506941 PDLIM3Q53GG5 364 aaPredicted RBP13.94□□□□□ -0.18
NPHP4-210ENST00000506941 OR1P1Q8NH06 330 aa13.94□□□□□ -0.18
NPHP4-210ENST00000506941 OR52E5Q8NH55 327 aa13.94□□□□□ -0.18
NPHP4-210ENST00000506941 MCRIP2Q9BUT9 160 aaKnown RBP13.94□□□□□ -0.18
NPHP4-210ENST00000506941 NUDT15Q9NV35 164 aa13.94□□□□□ -0.18
NPHP4-210ENST00000506941 PRKDCP78527 4128 aaKnown RBP13.94□□□□□ -0.18
NPHP4-210ENST00000506941 TRAV6A0A075B6T7 132 aa13.93□□□□□ -0.18
NPHP4-210ENST00000506941 ZP3P21754 424 aa13.93□□□□□ -0.18
NPHP4-210ENST00000506941 HOXA1P49639 335 aaPredicted RBP13.93□□□□□ -0.18
NPHP4-210ENST00000506941 SMCO1Q147U7 214 aa13.93□□□□□ -0.18
NPHP4-210ENST00000506941 C11orf87Q6NUJ2 197 aa13.93□□□□□ -0.18
NPHP4-210ENST00000506941 CLEC19AQ6UXS0 136 aa13.93□□□□□ -0.18
NPHP4-210ENST00000506941 LYG2Q86SG7 212 aa13.93□□□□□ -0.18
NPHP4-210ENST00000506941 ZNF502Q8TBZ5 544 aa13.93□□□□□ -0.18
NPHP4-210ENST00000506941 EEF1AKMT3Q96AZ1 226 aa13.93□□□□□ -0.18
NPHP4-210ENST00000506941 IGHV3-21A0A0B4J1V1 117 aa13.92□□□□□ -0.18
NPHP4-210ENST00000506941 SEC14L6B5MCN3 397 aa13.92□□□□□ -0.18
NPHP4-210ENST00000506941 K7EIM0 57 aa13.92□□□□□ -0.18
NPHP4-210ENST00000506941 CYB5BO43169 146 aa13.92□□□□□ -0.18
NPHP4-210ENST00000506941 ERHP84090 104 aaKnown RBP13.92□□□□□ -0.18
NPHP4-210ENST00000506941 KLF5Q13887 457 aaPredicted RBP13.92□□□□□ -0.18
NPHP4-210ENST00000506941 C4orf46Q504U0 113 aa13.92□□□□□ -0.18
NPHP4-210ENST00000506941 OR52B4Q8NGK2 314 aa13.92□□□□□ -0.18
NPHP4-210ENST00000506941 CXorf58Q96LI9 332 aa13.92□□□□□ -0.18
NPHP4-210ENST00000506941 THYN1Q9P016 225 aa13.92□□□□□ -0.18
NPHP4-210ENST00000506941 TRBV7-1A0A0A6YYK4 115 aa13.91□□□□□ -0.18
NPHP4-210ENST00000506941 A0A1B0GU03 582 aa13.91□□□□□ -0.18
NPHP4-210ENST00000506941 FAM240BA0A1B0GVZ2 78 aa13.91□□□□□ -0.18
NPHP4-210ENST00000506941 WIPF1O43516 503 aa13.91□□□□□ -0.18
NPHP4-210ENST00000506941 HOXB5P09067 269 aa13.91□□□□□ -0.18
NPHP4-210ENST00000506941 RNASE2P10153 161 aaKnown RBP13.91□□□□□ -0.18
NPHP4-210ENST00000506941 KRTAP10-11P60412 298 aa13.91□□□□□ -0.18
NPHP4-210ENST00000506941 DEFA6Q01524 100 aa13.91□□□□□ -0.18
NPHP4-210ENST00000506941 RPEL1Q2QD12 228 aa13.91□□□□□ -0.18
NPHP4-210ENST00000506941 BSXQ3C1V8 233 aa13.91□□□□□ -0.18
NPHP4-210ENST00000506941 MZT2BQ6NZ67 158 aa13.91□□□□□ -0.18
NPHP4-210ENST00000506941 OR1L6Q8NGR2 347 aa13.91□□□□□ -0.18
NPHP4-210ENST00000506941 VN1R17PQ8TDU5 208 aa13.91□□□□□ -0.18
NPHP4-210ENST00000506941 HSPB7Q9UBY9 170 aa13.91□□□□□ -0.18
NPHP4-210ENST00000506941 SORL1Q92673 2214 aa13.9□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms