RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 TMEM70Q9BUB7 260 aa7.96□□□□□ -1.13
SYNE1-230ENST00000495090 TNFRSF19Q9NS68 423 aa7.96□□□□□ -1.13
SYNE1-230ENST00000495090 MYO9BQ13459 2157 aa7.96□□□□□ -1.14
SYNE1-230ENST00000495090 C21orf140B9A014 251 aa7.95□□□□□ -1.14
SYNE1-230ENST00000495090 NTN3O00634 580 aaPredicted RBP7.95□□□□□ -1.14
SYNE1-230ENST00000495090 TOX4O94842 621 aa7.95□□□□□ -1.14
SYNE1-230ENST00000495090 HSPE1P61604 102 aaKnown RBP7.95□□□□□ -1.14
SYNE1-230ENST00000495090 SLC35B1P78383 322 aa7.95□□□□□ -1.14
SYNE1-230ENST00000495090 VAMP3Q15836 100 aa7.95□□□□□ -1.14
SYNE1-230ENST00000495090 Q56UQ5 140 aa7.95□□□□□ -1.14
SYNE1-230ENST00000495090 Q6ZVH6 145 aa7.95□□□□□ -1.14
SYNE1-230ENST00000495090 C11orf53Q8IXP5 236 aa7.95□□□□□ -1.14
SYNE1-230ENST00000495090 DEFB125Q8N687 156 aa7.95□□□□□ -1.14
SYNE1-230ENST00000495090 ZNF596Q8TC21 504 aa7.95□□□□□ -1.14
SYNE1-230ENST00000495090 DDB2Q92466 427 aa7.95□□□□□ -1.14
SYNE1-230ENST00000495090 MRPL32Q9BYC8 188 aaKnown RBP7.95□□□□□ -1.14
SYNE1-230ENST00000495090 CXXC4Q9H2H0 198 aa7.95□□□□□ -1.14
SYNE1-230ENST00000495090 PLEKHA3Q9HB20 300 aa7.95□□□□□ -1.14
SYNE1-230ENST00000495090 ENY2Q9NPA8 101 aa7.95□□□□□ -1.14
SYNE1-230ENST00000495090 LOXL2Q9Y4K0 774 aa7.95□□□□□ -1.14
SYNE1-230ENST00000495090 FREM1Q5H8C1 2179 aa7.95□□□□□ -1.14
SYNE1-230ENST00000495090 IGHV3-43A0A0B4J1X8 118 aa7.95□□□□□ -1.14
SYNE1-230ENST00000495090 M0R1X1 148 aa7.95□□□□□ -1.14
SYNE1-230ENST00000495090 TAX1BP3O14907 124 aa7.95□□□□□ -1.14
SYNE1-230ENST00000495090 IGHV3-43DP0DP04 118 aa7.95□□□□□ -1.14
SYNE1-230ENST00000495090 CCL4P13236 92 aa7.95□□□□□ -1.14
SYNE1-230ENST00000495090 SMIM21Q3B7S5 101 aa7.95□□□□□ -1.14
SYNE1-230ENST00000495090 OCIAD2Q56VL3 154 aa7.95□□□□□ -1.14
SYNE1-230ENST00000495090 C12orf54Q6X4T0 127 aa7.95□□□□□ -1.14
SYNE1-230ENST00000495090 TRIB1Q96RU8 372 aa7.95□□□□□ -1.14
SYNE1-230ENST00000495090 CST9LQ9H4G1 147 aa7.95□□□□□ -1.14
SYNE1-230ENST00000495090 SERTAD4Q9NUC0 356 aa7.95□□□□□ -1.14
SYNE1-230ENST00000495090 TRAV3A0A0B4J244 114 aa7.94□□□□□ -1.14
SYNE1-230ENST00000495090 WNT9BO14905 357 aa7.94□□□□□ -1.14
SYNE1-230ENST00000495090 C8orf88P0DMB2 117 aa7.94□□□□□ -1.14
SYNE1-230ENST00000495090 MGST1P10620 155 aaKnown RBP7.94□□□□□ -1.14
SYNE1-230ENST00000495090 OTX2P32243 289 aa7.94□□□□□ -1.14
SYNE1-230ENST00000495090 POU2AF1Q16633 256 aa7.94□□□□□ -1.14
SYNE1-230ENST00000495090 PET117Q6UWS5 81 aa7.94□□□□□ -1.14
SYNE1-230ENST00000495090 ZNF436-AS1Q8NC38 126 aaPredicted RBP7.94□□□□□ -1.14
SYNE1-230ENST00000495090 SLC25A40Q8TBP6 338 aa7.94□□□□□ -1.14
SYNE1-230ENST00000495090 CHCHD1Q96BP2 118 aaKnown RBP7.94□□□□□ -1.14
SYNE1-230ENST00000495090 SMIM12Q96EX1 92 aa7.94□□□□□ -1.14
SYNE1-230ENST00000495090 DIDO1Q9BTC0 2240 aaKnown RBP7.94□□□□□ -1.14
SYNE1-230ENST00000495090 A0A1B0GXF2 115 aa7.93□□□□□ -1.14
SYNE1-230ENST00000495090 DEFB108AA8MXU0 73 aa7.93□□□□□ -1.14
SYNE1-230ENST00000495090 F2RL2O00254 374 aa7.93□□□□□ -1.14
SYNE1-230ENST00000495090 OR7C2O60412 319 aa7.93□□□□□ -1.14
SYNE1-230ENST00000495090 ACTL6BO94805 426 aa7.93□□□□□ -1.14
SYNE1-230ENST00000495090 CELA3AP09093 270 aa7.93□□□□□ -1.14
SYNE1-230ENST00000495090 MFAP2P55001 183 aa7.93□□□□□ -1.14
SYNE1-230ENST00000495090 ALKBH6Q3KRA9 238 aa7.93□□□□□ -1.14
SYNE1-230ENST00000495090 FAM120AOSQ5T036 256 aa7.93□□□□□ -1.14
SYNE1-230ENST00000495090 BVES-AS1Q5T3Y7 98 aa7.93□□□□□ -1.14
SYNE1-230ENST00000495090 CLEC2AQ6UVW9 174 aa7.93□□□□□ -1.14
SYNE1-230ENST00000495090 WDR82Q6UXN9 313 aa7.93□□□□□ -1.14
SYNE1-230ENST00000495090 NUP35Q8NFH5 326 aa7.93□□□□□ -1.14
SYNE1-230ENST00000495090 SLC25A33Q9BSK2 321 aa7.93□□□□□ -1.14
SYNE1-230ENST00000495090 IFI27L2Q9H2X8 130 aa7.93□□□□□ -1.14
SYNE1-230ENST00000495090 GNG12Q9UBI6 72 aa7.93□□□□□ -1.14
SYNE1-230ENST00000495090 ZNF257Q9Y2Q1 563 aa7.93□□□□□ -1.14
SYNE1-230ENST00000495090 SOX21Q9Y651 276 aaPredicted RBP7.93□□□□□ -1.14
SYNE1-230ENST00000495090 LAMA1P25391 3075 aa7.93□□□□□ -1.14
SYNE1-230ENST00000495090 CACNA1EQ15878 2313 aa7.93□□□□□ -1.14
SYNE1-230ENST00000495090 OR4C46A6NHA9 309 aa7.93□□□□□ -1.14
SYNE1-230ENST00000495090 AHRRA9YTQ3 701 aa7.93□□□□□ -1.14
SYNE1-230ENST00000495090 HIST1H1EP10412 219 aaKnown RBP7.93□□□□□ -1.14
SYNE1-230ENST00000495090 RNF151Q2KHN1 245 aa7.93□□□□□ -1.14
SYNE1-230ENST00000495090 GDF5OSQ5U4N7 250 aa7.93□□□□□ -1.14
SYNE1-230ENST00000495090 SPINK14Q6IE38 97 aa7.93□□□□□ -1.14
SYNE1-230ENST00000495090 RNASEKQ6P5S7 137 aaKnown RBP7.93□□□□□ -1.14
SYNE1-230ENST00000495090 SLC25A34Q6PIV7 304 aa7.93□□□□□ -1.14
SYNE1-230ENST00000495090 VKORC1L1Q8N0U8 176 aa7.93□□□□□ -1.14
SYNE1-230ENST00000495090 NHLRC2Q8NBF2 726 aa7.93□□□□□ -1.14
SYNE1-230ENST00000495090 RFESDQ8TAC1 157 aa7.93□□□□□ -1.14
SYNE1-230ENST00000495090 FAM122AQ96E09 287 aa7.93□□□□□ -1.14
SYNE1-230ENST00000495090 TTTY12Q9BZ98 90 aa7.93□□□□□ -1.14
SYNE1-230ENST00000495090 GCM1Q9NP62 436 aa7.93□□□□□ -1.14
SYNE1-230ENST00000495090 OBP2BQ9NPH6 170 aa7.93□□□□□ -1.14
SYNE1-230ENST00000495090 DUSP13Q9UII6 198 aa7.93□□□□□ -1.14
SYNE1-230ENST00000495090 PRNDQ9UKY0 176 aa7.93□□□□□ -1.14
SYNE1-230ENST00000495090 HCFC1P51610 2035 aa7.92□□□□□ -1.14
SYNE1-230ENST00000495090 CD5LO43866 347 aa7.92□□□□□ -1.14
SYNE1-230ENST00000495090 OR5AL1P0C617 328 aa7.92□□□□□ -1.14
SYNE1-230ENST00000495090 LOXL3P58215 753 aa7.92□□□□□ -1.14
SYNE1-230ENST00000495090 RPL8P62917 257 aaKnown RBP7.92□□□□□ -1.14
SYNE1-230ENST00000495090 MPV17L2Q567V2 206 aa7.92□□□□□ -1.14
SYNE1-230ENST00000495090 LDLRAD2Q5SZI1 272 aa7.92□□□□□ -1.14
SYNE1-230ENST00000495090 LYSMD4Q5XG99 296 aa7.92□□□□□ -1.14
SYNE1-230ENST00000495090 OR4A47Q6IF82 309 aa7.92□□□□□ -1.14
SYNE1-230ENST00000495090 FAM71F2Q6NXP2 309 aa7.92□□□□□ -1.14
SYNE1-230ENST00000495090 ZNF826PQ6ZT77 177 aa7.92□□□□□ -1.14
SYNE1-230ENST00000495090 KLF14Q8TD94 323 aaPredicted RBP7.92□□□□□ -1.14
SYNE1-230ENST00000495090 FAM168AQ92567 244 aa7.92□□□□□ -1.14
SYNE1-230ENST00000495090 SNRNP40Q96DI7 357 aaKnown RBP7.92□□□□□ -1.14
SYNE1-230ENST00000495090 ADTRPQ96IZ2 230 aa7.92□□□□□ -1.14
SYNE1-230ENST00000495090 VPS25Q9BRG1 176 aa7.92□□□□□ -1.14
SYNE1-230ENST00000495090 TMEM191AQ9H0A3 160 aa7.92□□□□□ -1.14
SYNE1-230ENST00000495090 MS4A6AQ9H2W1 248 aa7.92□□□□□ -1.14
SYNE1-230ENST00000495090 R4GN57 208 aa7.92□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms