RNA–Protein interactions for RNA: ENST00000491233.1

COL6A3-211, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 3

Gene COL6A3, Length 652 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-211ENST00000491233 GPX8Q8TED1 209 aa10.16□□□□□ -0.78
COL6A3-211ENST00000491233 SLC25A46Q96AG3 418 aa10.16□□□□□ -0.78
COL6A3-211ENST00000491233 TMEM56Q96MV1 263 aa10.16□□□□□ -0.78
COL6A3-211ENST00000491233 EPPK1P58107 5090 aaKnown RBP10.16□□□□□ -0.78
COL6A3-211ENST00000491233 PLECQ15149 4684 aaKnown RBP10.16□□□□□ -0.78
COL6A3-211ENST00000491233 TSPAN4O14817 238 aa10.15□□□□□ -0.78
COL6A3-211ENST00000491233 ZNF207O43670 478 aaKnown RBP10.15□□□□□ -0.78
COL6A3-211ENST00000491233 ADMP35318 185 aa10.15□□□□□ -0.78
COL6A3-211ENST00000491233 TSPAN5P62079 268 aa10.15□□□□□ -0.78
COL6A3-211ENST00000491233 NCS1P62166 190 aa10.15□□□□□ -0.78
COL6A3-211ENST00000491233 TBC1D26Q86UD7 250 aa10.15□□□□□ -0.78
COL6A3-211ENST00000491233 SNX29P2Q8IUI4 249 aa10.15□□□□□ -0.78
COL6A3-211ENST00000491233 ATP6V0BQ99437 205 aa10.15□□□□□ -0.78
COL6A3-211ENST00000491233 TSC22D3Q99576 134 aa10.15□□□□□ -0.78
COL6A3-211ENST00000491233 COMMD3Q9UBI1 195 aa10.15□□□□□ -0.78
COL6A3-211ENST00000491233 BIRC6Q9NR09 4857 aa10.15□□□□□ -0.79
COL6A3-211ENST00000491233 TNFAIP8O95379 198 aa10.14□□□□□ -0.79
COL6A3-211ENST00000491233 APOA1P02647 267 aa10.14□□□□□ -0.79
COL6A3-211ENST00000491233 S100GP29377 79 aa10.14□□□□□ -0.79
COL6A3-211ENST00000491233 RCVRNP35243 200 aa10.14□□□□□ -0.79
COL6A3-211ENST00000491233 APOC4P55056 127 aa10.14□□□□□ -0.79
COL6A3-211ENST00000491233 ODF3L2Q3SX64 289 aa10.14□□□□□ -0.79
COL6A3-211ENST00000491233 LAMTOR1Q6IAA8 161 aa10.14□□□□□ -0.79
COL6A3-211ENST00000491233 SCPEP1Q9HB40 452 aa10.14□□□□□ -0.79
COL6A3-211ENST00000491233 FAM212BQ9NTI7 297 aaPredicted RBP10.14□□□□□ -0.79
COL6A3-211ENST00000491233 TMEM14BQ9NUH8 114 aa10.14□□□□□ -0.79
COL6A3-211ENST00000491233 FKBP11Q9NYL4 201 aa10.14□□□□□ -0.79
COL6A3-211ENST00000491233 OR4C46A6NHA9 309 aa10.13□□□□□ -0.79
COL6A3-211ENST00000491233 K7EMT4 169 aa10.13□□□□□ -0.79
COL6A3-211ENST00000491233 IGKV1-39P01597 117 aa10.13□□□□□ -0.79
COL6A3-211ENST00000491233 IGKV1D-39P04432 117 aa10.13□□□□□ -0.79
COL6A3-211ENST00000491233 CTSDP07339 412 aaPredicted RBP10.13□□□□□ -0.79
COL6A3-211ENST00000491233 DEFB135Q30KP9 77 aa10.13□□□□□ -0.79
COL6A3-211ENST00000491233 LPCAT3Q6P1A2 487 aa10.13□□□□□ -0.79
COL6A3-211ENST00000491233 H2BFWTQ7Z2G1 175 aa10.13□□□□□ -0.79
COL6A3-211ENST00000491233 OR1P1Q8NH06 330 aa10.13□□□□□ -0.79
COL6A3-211ENST00000491233 MRGPRFQ96AM1 343 aa10.13□□□□□ -0.79
COL6A3-211ENST00000491233 MISP3Q96FF7 219 aa10.13□□□□□ -0.79
COL6A3-211ENST00000491233 ZNF414Q96IQ9 312 aa10.13□□□□□ -0.79
COL6A3-211ENST00000491233 SEC22AQ96IW7 307 aa10.13□□□□□ -0.79
COL6A3-211ENST00000491233 CMTM3Q96MX0 182 aa10.13□□□□□ -0.79
COL6A3-211ENST00000491233 FUNDC2Q9BWH2 189 aa10.13□□□□□ -0.79
COL6A3-211ENST00000491233 A0A0J9YWU9 116 aa10.12□□□□□ -0.79
COL6A3-211ENST00000491233 SMIM31A0A1B0GVY4 71 aa10.12□□□□□ -0.79
COL6A3-211ENST00000491233 C15orf62A8K5M9 175 aa10.12□□□□□ -0.79
COL6A3-211ENST00000491233 HPGDSO60760 199 aa10.12□□□□□ -0.79
COL6A3-211ENST00000491233 CTSGP08311 255 aa10.12□□□□□ -0.79
COL6A3-211ENST00000491233 VBP1P61758 197 aa10.12□□□□□ -0.79
COL6A3-211ENST00000491233 PRCDQ00LT1 54 aa10.12□□□□□ -0.79
COL6A3-211ENST00000491233 PMS2P11Q13670 270 aa10.12□□□□□ -0.79
COL6A3-211ENST00000491233 RNASE12Q5GAN4 147 aaKnown RBP10.12□□□□□ -0.79
COL6A3-211ENST00000491233 Q6ZWC4 215 aa10.12□□□□□ -0.79
COL6A3-211ENST00000491233 OR4A16Q8NH70 328 aa10.12□□□□□ -0.79
COL6A3-211ENST00000491233 TP53TG1Q9Y2A0 90 aa10.12□□□□□ -0.79
COL6A3-211ENST00000491233 IGHV3-49A0A0A0MS15 119 aa10.11□□□□□ -0.79
COL6A3-211ENST00000491233 IGHV7-4-1A0A0J9YVY3 117 aa10.11□□□□□ -0.79
COL6A3-211ENST00000491233 CXorf65A6NEN9 183 aa10.11□□□□□ -0.79
COL6A3-211ENST00000491233 I3L2K1 104 aa10.11□□□□□ -0.79
COL6A3-211ENST00000491233 M0QYG6 137 aa10.11□□□□□ -0.79
COL6A3-211ENST00000491233 NUPL2O15504 423 aaKnown RBP10.11□□□□□ -0.79
COL6A3-211ENST00000491233 SPRY2O43597 315 aa10.11□□□□□ -0.79
COL6A3-211ENST00000491233 RPL35AP18077 110 aaKnown RBP10.11□□□□□ -0.79
COL6A3-211ENST00000491233 ELK1P19419 428 aa10.11□□□□□ -0.79
COL6A3-211ENST00000491233 UCP3P55916 312 aa10.11□□□□□ -0.79
COL6A3-211ENST00000491233 EWSR1Q01844 656 aaKnown RBP eCLIP10.11□□□□□ -0.79
COL6A3-211ENST00000491233 RELQ04864 619 aaPredicted RBP10.11□□□□□ -0.79
COL6A3-211ENST00000491233 LYG2Q86SG7 212 aa10.11□□□□□ -0.79
COL6A3-211ENST00000491233 WFDC3Q8IUB2 231 aa10.11□□□□□ -0.79
COL6A3-211ENST00000491233 ZNF114Q8NC26 417 aa10.11□□□□□ -0.79
COL6A3-211ENST00000491233 RNF2Q99496 336 aa10.11□□□□□ -0.79
COL6A3-211ENST00000491233 SMPXQ9UHP9 88 aa10.11□□□□□ -0.79
COL6A3-211ENST00000491233 UBE2CO00762 179 aa10.1□□□□□ -0.79
COL6A3-211ENST00000491233 YIF1AO95070 293 aa10.1□□□□□ -0.79
COL6A3-211ENST00000491233 MT-CO2P00403 227 aa10.1□□□□□ -0.79
COL6A3-211ENST00000491233 IGHV3-48P01763 117 aa10.1□□□□□ -0.79
COL6A3-211ENST00000491233 FCGR2BP31994 310 aaPredicted RBP10.1□□□□□ -0.79
COL6A3-211ENST00000491233 BMI1P35226 326 aa10.1□□□□□ -0.79
COL6A3-211ENST00000491233 MFAP4P55083 255 aa10.1□□□□□ -0.79
COL6A3-211ENST00000491233 IZUMO4Q1ZYL8 232 aa10.1□□□□□ -0.79
COL6A3-211ENST00000491233 SPINK9Q5DT21 86 aa10.1□□□□□ -0.79
COL6A3-211ENST00000491233 STPG3Q8N7X2 389 aa10.1□□□□□ -0.79
COL6A3-211ENST00000491233 PINX1Q96BK5 328 aaKnown RBP10.1□□□□□ -0.79
COL6A3-211ENST00000491233 RHPN1-AS1Q9BWJ2 59 aa10.1□□□□□ -0.79
COL6A3-211ENST00000491233 KIR2DL5BA0A0G2JN68 375 aa10.09□□□□□ -0.79
COL6A3-211ENST00000491233 KIR2DL5BA0A0G2JPC4 375 aa10.09□□□□□ -0.79
COL6A3-211ENST00000491233 FAM25AB3EWG3 89 aa10.09□□□□□ -0.79
COL6A3-211ENST00000491233 FAM25CB3EWG5 89 aa10.09□□□□□ -0.79
COL6A3-211ENST00000491233 FAM25GB3EWG6 89 aa10.09□□□□□ -0.79
COL6A3-211ENST00000491233 CHEK1O14757 476 aa10.09□□□□□ -0.79
COL6A3-211ENST00000491233 GNG7O60262 68 aa10.09□□□□□ -0.79
COL6A3-211ENST00000491233 PGAM2P15259 253 aa10.09□□□□□ -0.79
COL6A3-211ENST00000491233 PI3P19957 117 aa10.09□□□□□ -0.79
COL6A3-211ENST00000491233 TFPI2P48307 235 aa10.09□□□□□ -0.79
COL6A3-211ENST00000491233 HSPE1P61604 102 aaKnown RBP10.09□□□□□ -0.79
COL6A3-211ENST00000491233 TNFRSF9Q07011 255 aa10.09□□□□□ -0.79
COL6A3-211ENST00000491233 RNASE10Q5GAN6 216 aaKnown RBP10.09□□□□□ -0.79
COL6A3-211ENST00000491233 KIR2DL5AQ8N109 375 aa10.09□□□□□ -0.79
COL6A3-211ENST00000491233 TMEM116Q8NCL8 245 aa10.09□□□□□ -0.79
COL6A3-211ENST00000491233 KIR2DL5BQ8NHK3 375 aa10.09□□□□□ -0.79
COL6A3-211ENST00000491233 LINC00476Q8WZB0 136 aa10.09□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms