RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 IFT46Q9NQC8 304 aa9.15□□□□□ -0.94
CPSF3-204ENST00000489403 ANAPC10Q9UM13 185 aa9.15□□□□□ -0.94
CPSF3-204ENST00000489403 KLK5Q9Y337 293 aaPredicted RBP9.15□□□□□ -0.94
CPSF3-204ENST00000489403 OR51B2Q9Y5P1 312 aa9.15□□□□□ -0.94
CPSF3-204ENST00000489403 C15orf62A8K5M9 175 aa9.14□□□□□ -0.95
CPSF3-204ENST00000489403 KRASP01116 189 aa9.14□□□□□ -0.95
CPSF3-204ENST00000489403 LPAR6P43657 344 aa9.14□□□□□ -0.95
CPSF3-204ENST00000489403 RFX2P48378 723 aa9.14□□□□□ -0.95
CPSF3-204ENST00000489403 ZNF124Q15973 351 aa9.14□□□□□ -0.95
CPSF3-204ENST00000489403 Q56UQ5 140 aa9.14□□□□□ -0.95
CPSF3-204ENST00000489403 DHRS11Q6UWP2 260 aa9.14□□□□□ -0.95
CPSF3-204ENST00000489403 APRG1Q8IVJ8 170 aa9.14□□□□□ -0.95
CPSF3-204ENST00000489403 RPP25LQ8N5L8 163 aaKnown RBP9.14□□□□□ -0.95
CPSF3-204ENST00000489403 TMEM217Q8N7C4 229 aa9.14□□□□□ -0.95
CPSF3-204ENST00000489403 OR5B3Q8NH48 314 aa9.14□□□□□ -0.95
CPSF3-204ENST00000489403 PHLDA1Q8WV24 401 aaPredicted RBP9.14□□□□□ -0.95
CPSF3-204ENST00000489403 RNF2Q99496 336 aa9.14□□□□□ -0.95
CPSF3-204ENST00000489403 FXYD6Q9H0Q3 95 aa9.14□□□□□ -0.95
CPSF3-204ENST00000489403 DBX1A6NMT0 343 aa9.13□□□□□ -0.95
CPSF3-204ENST00000489403 CHEK1O14757 476 aa9.13□□□□□ -0.95
CPSF3-204ENST00000489403 XRCC3O43542 346 aa9.13□□□□□ -0.95
CPSF3-204ENST00000489403 SNAPC5O75971 98 aa9.13□□□□□ -0.95
CPSF3-204ENST00000489403 PMP2P02689 132 aa9.13□□□□□ -0.95
CPSF3-204ENST00000489403 CTSGP08311 255 aa9.13□□□□□ -0.95
CPSF3-204ENST00000489403 CADM3Q8N126 398 aa9.13□□□□□ -0.95
CPSF3-204ENST00000489403 DGCR14Q96DF8 476 aaKnown RBP9.13□□□□□ -0.95
CPSF3-204ENST00000489403 YTHDF1Q9BYJ9 559 aaKnown RBP9.13□□□□□ -0.95
CPSF3-204ENST00000489403 SMPXQ9UHP9 88 aa9.13□□□□□ -0.95
CPSF3-204ENST00000489403 IGHV7-4-1A0A0J9YVY3 117 aa9.12□□□□□ -0.95
CPSF3-204ENST00000489403 C15orf61A6NNL5 157 aa9.12□□□□□ -0.95
CPSF3-204ENST00000489403 DEDDO75618 318 aa9.12□□□□□ -0.95
CPSF3-204ENST00000489403 TGFBR1P36897 503 aa9.12□□□□□ -0.95
CPSF3-204ENST00000489403 TAS2R20P59543 309 aa9.12□□□□□ -0.95
CPSF3-204ENST00000489403 RELQ04864 619 aaPredicted RBP9.12□□□□□ -0.95
CPSF3-204ENST00000489403 TSPAN14Q8NG11 270 aa9.12□□□□□ -0.95
CPSF3-204ENST00000489403 OR1P1Q8NH06 330 aa9.12□□□□□ -0.95
CPSF3-204ENST00000489403 OR10C1Q96KK4 312 aa9.12□□□□□ -0.95
CPSF3-204ENST00000489403 TMEM56Q96MV1 263 aa9.12□□□□□ -0.95
CPSF3-204ENST00000489403 RHPN1-AS1Q9BWJ2 59 aa9.12□□□□□ -0.95
CPSF3-204ENST00000489403 TMEM14BQ9NUH8 114 aa9.12□□□□□ -0.95
CPSF3-204ENST00000489403 PRNDQ9UKY0 176 aa9.12□□□□□ -0.95
CPSF3-204ENST00000489403 IGKV3-7A0A075B6H7 116 aa9.11□□□□□ -0.95
CPSF3-204ENST00000489403 IGHV3-49A0A0A0MS15 119 aa9.11□□□□□ -0.95
CPSF3-204ENST00000489403 I3L2K1 104 aa9.11□□□□□ -0.95
CPSF3-204ENST00000489403 GPR31O00270 319 aa9.11□□□□□ -0.95
CPSF3-204ENST00000489403 NUPL2O15504 423 aaKnown RBP9.11□□□□□ -0.95
CPSF3-204ENST00000489403 TMEM127O75204 238 aa9.11□□□□□ -0.95
CPSF3-204ENST00000489403 NAT1P18440 290 aa9.11□□□□□ -0.95
CPSF3-204ENST00000489403 TFPI2P48307 235 aa9.11□□□□□ -0.95
CPSF3-204ENST00000489403 NEDD8Q15843 81 aa9.11□□□□□ -0.95
CPSF3-204ENST00000489403 UBE2NLQ5JXB2 153 aa9.11□□□□□ -0.95
CPSF3-204ENST00000489403 CMTM1Q8IZ96 169 aa9.11□□□□□ -0.95
CPSF3-204ENST00000489403 TMEM116Q8NCL8 245 aa9.11□□□□□ -0.95
CPSF3-204ENST00000489403 OR5H2Q8NGV7 314 aa9.11□□□□□ -0.95
CPSF3-204ENST00000489403 MISP3Q96FF7 219 aa9.11□□□□□ -0.95
CPSF3-204ENST00000489403 S100A16Q96FQ6 103 aaKnown RBP9.11□□□□□ -0.95
CPSF3-204ENST00000489403 TSC22D3Q99576 134 aa9.11□□□□□ -0.95
CPSF3-204ENST00000489403 KRTAP17-1Q9BYP8 105 aa9.11□□□□□ -0.95
CPSF3-204ENST00000489403 C6orf62Q9GZU0 229 aaPredicted RBP9.11□□□□□ -0.95
CPSF3-204ENST00000489403 CSTL1Q9H114 145 aa9.11□□□□□ -0.95
CPSF3-204ENST00000489403 Q9H521 79 aa9.11□□□□□ -0.95
CPSF3-204ENST00000489403 FKBP11Q9NYL4 201 aa9.11□□□□□ -0.95
CPSF3-204ENST00000489403 DNAH10Q8IVF4 4471 aa9.11□□□□□ -0.95
CPSF3-204ENST00000489403 HERC2O95714 4834 aa9.1□□□□□ -0.95
CPSF3-204ENST00000489403 MPTX1A8MV57 137 aa9.1□□□□□ -0.95
CPSF3-204ENST00000489403 YIF1AO95070 293 aa9.1□□□□□ -0.95
CPSF3-204ENST00000489403 ATP6V1G2O95670 118 aa9.1□□□□□ -0.95
CPSF3-204ENST00000489403 HRH1P35367 487 aa9.1□□□□□ -0.95
CPSF3-204ENST00000489403 MFAP4P55083 255 aa9.1□□□□□ -0.95
CPSF3-204ENST00000489403 TAS2R46P59540 309 aa9.1□□□□□ -0.95
CPSF3-204ENST00000489403 PHLDA2Q53GA4 152 aa9.1□□□□□ -0.95
CPSF3-204ENST00000489403 TMEM69Q5SWH9 247 aa9.1□□□□□ -0.95
CPSF3-204ENST00000489403 FAM90A2PQ658T7 463 aa9.1□□□□□ -0.95
CPSF3-204ENST00000489403 LGALS9CQ6DKI2 356 aa9.1□□□□□ -0.95
CPSF3-204ENST00000489403 GATAD1Q8WUU5 269 aa9.1□□□□□ -0.95
CPSF3-204ENST00000489403 SLC25A46Q96AG3 418 aa9.1□□□□□ -0.95
CPSF3-204ENST00000489403 RARRES2Q99969 163 aa9.1□□□□□ -0.95
CPSF3-204ENST00000489403 NXF2Q9GZY0 626 aaKnown RBP9.1□□□□□ -0.95
CPSF3-204ENST00000489403 DNAH6Q9C0G6 4158 aa9.09□□□□□ -0.95
CPSF3-204ENST00000489403 IGHV3OR16-13A0A075B7E8 117 aa9.09□□□□□ -0.95
CPSF3-204ENST00000489403 IGHV3-74A0A0B4J1X5 117 aa9.09□□□□□ -0.95
CPSF3-204ENST00000489403 MT-CO2P00403 227 aa9.09□□□□□ -0.95
CPSF3-204ENST00000489403 IGKV1-39P01597 117 aa9.09□□□□□ -0.95
CPSF3-204ENST00000489403 IGHV3-48P01763 117 aa9.09□□□□□ -0.95
CPSF3-204ENST00000489403 IGKV1D-39P04432 117 aa9.09□□□□□ -0.95
CPSF3-204ENST00000489403 CMC4P56277 68 aaPredicted RBP9.09□□□□□ -0.95
CPSF3-204ENST00000489403 NANOS2P60321 138 aaKnown RBP9.09□□□□□ -0.95
CPSF3-204ENST00000489403 LYSMD2Q8IV50 215 aa9.09□□□□□ -0.95
CPSF3-204ENST00000489403 GBGT1Q8N5D6 347 aa9.09□□□□□ -0.95
CPSF3-204ENST00000489403 ZNF114Q8NC26 417 aa9.09□□□□□ -0.95
CPSF3-204ENST00000489403 OR6F1Q8NGZ6 308 aa9.09□□□□□ -0.95
CPSF3-204ENST00000489403 SEC22AQ96IW7 307 aa9.09□□□□□ -0.95
CPSF3-204ENST00000489403 TXN2Q99757 166 aa9.09□□□□□ -0.95
CPSF3-204ENST00000489403 C11orf68Q9H3H3 251 aaKnown RBP9.09□□□□□ -0.95
CPSF3-204ENST00000489403 TRAV14DV4A0A0A6YYC5 116 aa9.08□□□□□ -0.96
CPSF3-204ENST00000489403 HLA-DMAP28067 261 aa9.08□□□□□ -0.96
CPSF3-204ENST00000489403 RPS19P39019 145 aaKnown RBP9.08□□□□□ -0.96
CPSF3-204ENST00000489403 PRCDQ00LT1 54 aa9.08□□□□□ -0.96
CPSF3-204ENST00000489403 TBC1D26Q86UD7 250 aa9.08□□□□□ -0.96
CPSF3-204ENST00000489403 CROCCP3Q8IVE0 287 aa9.08□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms