RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 GLIPR1L1Q6UWM5 242 aa3.99□□□□□ -1.77
USP40-213ENST00000483216 TMPPEQ6ZT21 453 aa3.99□□□□□ -1.77
USP40-213ENST00000483216 OR5A2Q8NGI9 324 aa3.99□□□□□ -1.77
USP40-213ENST00000483216 OR51G1Q8NGK1 321 aa3.99□□□□□ -1.77
USP40-213ENST00000483216 OR5AR1Q8NGP9 310 aa3.99□□□□□ -1.77
USP40-213ENST00000483216 OR2A1Q8NGT9 310 aa3.99□□□□□ -1.77
USP40-213ENST00000483216 RNF133Q8WVZ7 376 aa3.99□□□□□ -1.77
USP40-213ENST00000483216 PSMF1Q92530 271 aa3.99□□□□□ -1.77
USP40-213ENST00000483216 KLK6Q92876 244 aa3.99□□□□□ -1.77
USP40-213ENST00000483216 RPUSD4Q96CM3 377 aaKnown RBP3.99□□□□□ -1.77
USP40-213ENST00000483216 COX14Q96I36 57 aa3.99□□□□□ -1.77
USP40-213ENST00000483216 AP1S3Q96PC3 154 aa3.99□□□□□ -1.77
USP40-213ENST00000483216 TBX15Q96SF7 602 aa3.99□□□□□ -1.77
USP40-213ENST00000483216 ANXA10Q9UJ72 324 aa3.99□□□□□ -1.77
USP40-213ENST00000483216 NPIPA1Q9UND3 350 aa3.99□□□□□ -1.77
USP40-213ENST00000483216 MRPS18BQ9Y676 258 aaKnown RBP3.99□□□□□ -1.77
USP40-213ENST00000483216 LAMA3Q16787 3333 aa3.98□□□□□ -1.77
USP40-213ENST00000483216 PRRC2BQ5JSZ5 2229 aaKnown RBP3.98□□□□□ -1.77
USP40-213ENST00000483216 C9JQL5 133 aa3.98□□□□□ -1.77
USP40-213ENST00000483216 SLC16A7O60669 478 aa3.98□□□□□ -1.77
USP40-213ENST00000483216 MPDU1O75352 247 aa3.98□□□□□ -1.77
USP40-213ENST00000483216 ZNF737O75373 536 aa3.98□□□□□ -1.77
USP40-213ENST00000483216 CA3P07451 260 aa3.98□□□□□ -1.77
USP40-213ENST00000483216 PFN1P07737 140 aaKnown RBP3.98□□□□□ -1.77
USP40-213ENST00000483216 CXCL1P09341 107 aa3.98□□□□□ -1.77
USP40-213ENST00000483216 OR5G3P0C626 314 aa3.98□□□□□ -1.77
USP40-213ENST00000483216 SMIM17P0DL12 118 aa3.98□□□□□ -1.77
USP40-213ENST00000483216 CRISP2P16562 243 aa3.98□□□□□ -1.77
USP40-213ENST00000483216 PMCHP20382 165 aa3.98□□□□□ -1.77
USP40-213ENST00000483216 BLVRBP30043 206 aaPredicted RBP3.98□□□□□ -1.77
USP40-213ENST00000483216 GRPRP30550 384 aa3.98□□□□□ -1.77
USP40-213ENST00000483216 CEACAM3P40198 252 aa3.98□□□□□ -1.77
USP40-213ENST00000483216 YPEL3P61236 119 aaPredicted RBP3.98□□□□□ -1.77
USP40-213ENST00000483216 RPS15P62841 145 aaKnown RBP3.98□□□□□ -1.77
USP40-213ENST00000483216 GNB2P62879 340 aa3.98□□□□□ -1.77
USP40-213ENST00000483216 SUPT4H1P63272 117 aaKnown RBP3.98□□□□□ -1.77
USP40-213ENST00000483216 QRFPP83859 136 aa3.98□□□□□ -1.77
USP40-213ENST00000483216 RPL18Q07020 188 aaKnown RBP3.98□□□□□ -1.77
USP40-213ENST00000483216 SIGLEC14Q08ET2 396 aa3.98□□□□□ -1.77
USP40-213ENST00000483216 MSMO1Q15800 293 aa3.98□□□□□ -1.77
USP40-213ENST00000483216 ADIRFQ15847 76 aa3.98□□□□□ -1.77
USP40-213ENST00000483216 PSG3Q16557 428 aa3.98□□□□□ -1.77
USP40-213ENST00000483216 AADACL3Q5VUY0 350 aa3.98□□□□□ -1.77
USP40-213ENST00000483216 Q6ZS49 121 aa3.98□□□□□ -1.77
USP40-213ENST00000483216 BAGE3Q86Y29 109 aa3.98□□□□□ -1.77
USP40-213ENST00000483216 BAGE2Q86Y30 109 aa3.98□□□□□ -1.77
USP40-213ENST00000483216 MRPL43Q8N983 215 aaKnown RBP3.98□□□□□ -1.77
USP40-213ENST00000483216 ZFP62Q8NB50 900 aaPredicted RBP3.98□□□□□ -1.77
USP40-213ENST00000483216 TMEM230Q96A57 120 aa3.98□□□□□ -1.77
USP40-213ENST00000483216 ZNF707Q96C28 371 aaPredicted RBP3.98□□□□□ -1.77
USP40-213ENST00000483216 TMEM56Q96MV1 263 aa3.98□□□□□ -1.77
USP40-213ENST00000483216 SCRT1Q9BWW7 348 aa3.98□□□□□ -1.77
USP40-213ENST00000483216 LPAR5Q9H1C0 372 aa3.98□□□□□ -1.77
USP40-213ENST00000483216 LINC00597Q9H2U6 94 aa3.98□□□□□ -1.77
USP40-213ENST00000483216 GLRX2Q9NS18 164 aa3.98□□□□□ -1.77
USP40-213ENST00000483216 GNG13Q9P2W3 67 aa3.98□□□□□ -1.77
USP40-213ENST00000483216 PRO0461Q9UI25 63 aa3.98□□□□□ -1.77
USP40-213ENST00000483216 LAMTOR2Q9Y2Q5 125 aa3.98□□□□□ -1.77
USP40-213ENST00000483216 KCNE3Q9Y6H6 103 aa3.98□□□□□ -1.77
USP40-213ENST00000483216 TMEM56-RWDD3S4R434 201 aa3.98□□□□□ -1.77
USP40-213ENST00000483216 ARL2-SNX15V9GYD0 113 aa3.98□□□□□ -1.77
USP40-213ENST00000483216 NUP210Q8TEM1 1887 aaPredicted RBP3.98□□□□□ -1.77
USP40-213ENST00000483216 COL6A3P12111 3177 aa3.97□□□□□ -1.77
USP40-213ENST00000483216 IGHV2-70DA0A0C4DH43 119 aa3.97□□□□□ -1.77
USP40-213ENST00000483216 IGHV1-69-2A0A0G2JMI3 117 aa3.97□□□□□ -1.77
USP40-213ENST00000483216 A0A0U1RQV5 110 aa3.97□□□□□ -1.77
USP40-213ENST00000483216 C3orf85A0A1B0GTC6 90 aa3.97□□□□□ -1.77
USP40-213ENST00000483216 CTXND1A0A1B0GTU2 59 aa3.97□□□□□ -1.77
USP40-213ENST00000483216 MDFIC2A0A1B0GVS7 189 aa3.97□□□□□ -1.77
USP40-213ENST00000483216 A0A1W2PPV9 198 aa3.97□□□□□ -1.77
USP40-213ENST00000483216 C5orf67F2Z3F1 127 aa3.97□□□□□ -1.77
USP40-213ENST00000483216 K7ENP7 123 aa3.97□□□□□ -1.77
USP40-213ENST00000483216 NPIPB7O75200 414 aa3.97□□□□□ -1.77
USP40-213ENST00000483216 KLF8O95600 359 aaPredicted RBP3.97□□□□□ -1.77
USP40-213ENST00000483216 SERPINE2P07093 398 aa3.97□□□□□ -1.77
USP40-213ENST00000483216 CISD3P0C7P0 127 aa3.97□□□□□ -1.77
USP40-213ENST00000483216 SMIM10L1P0DMW3 83 aa3.97□□□□□ -1.77
USP40-213ENST00000483216 FUT3P21217 361 aa3.97□□□□□ -1.77
USP40-213ENST00000483216 KITLGP21583 273 aa3.97□□□□□ -1.77
USP40-213ENST00000483216 CCL1P22362 96 aa3.97□□□□□ -1.77
USP40-213ENST00000483216 TUBG1P23258 451 aa3.97□□□□□ -1.77
USP40-213ENST00000483216 OMGP23515 440 aa3.97□□□□□ -1.77
USP40-213ENST00000483216 REG1BP48304 166 aa3.97□□□□□ -1.77
USP40-213ENST00000483216 CLDN18P56856 261 aa3.97□□□□□ -1.77
USP40-213ENST00000483216 NTHL1P78549 312 aa3.97□□□□□ -1.77
USP40-213ENST00000483216 ZNF154Q13106 437 aa3.97□□□□□ -1.77
USP40-213ENST00000483216 VAMP3Q15836 100 aa3.97□□□□□ -1.77
USP40-213ENST00000483216 LRRC10Q5BKY1 277 aa3.97□□□□□ -1.77
USP40-213ENST00000483216 TMEM215Q68D42 235 aa3.97□□□□□ -1.77
USP40-213ENST00000483216 CBLN3Q6UW01 205 aa3.97□□□□□ -1.77
USP40-213ENST00000483216 Q6ZN92 141 aa3.97□□□□□ -1.77
USP40-213ENST00000483216 LINC00596Q86U02 117 aa3.97□□□□□ -1.77
USP40-213ENST00000483216 NIT1Q86X76 327 aa3.97□□□□□ -1.77
USP40-213ENST00000483216 LYPD6Q86Y78 171 aa3.97□□□□□ -1.77
USP40-213ENST00000483216 TMEM252Q8N6L7 170 aa3.97□□□□□ -1.77
USP40-213ENST00000483216 LRRC75AQ8NAA5 344 aa3.97□□□□□ -1.77
USP40-213ENST00000483216 OR10P1Q8NGE3 313 aa3.97□□□□□ -1.77
USP40-213ENST00000483216 OR52R1Q8NGF1 315 aa3.97□□□□□ -1.77
USP40-213ENST00000483216 OR5C1Q8NGR4 320 aa3.97□□□□□ -1.77
USP40-213ENST00000483216 OR13G1Q8NGZ3 307 aa3.97□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms