RNA–Protein interactions for RNA: ENST00000479625.1

GPNMB-211, Transcript of glycoprotein nmb, humanhuman

TSL 2

Gene GPNMB, Length 788 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-211ENST00000479625 SLC25A24Q6NUK1 477 aa6.94□□□□□ -1.3
GPNMB-211ENST00000479625 MS4A15Q8N5U1 240 aa6.94□□□□□ -1.3
GPNMB-211ENST00000479625 NANOGP1Q8N7R0 232 aa6.94□□□□□ -1.3
GPNMB-211ENST00000479625 ST8SIA2Q92186 375 aa6.94□□□□□ -1.3
GPNMB-211ENST00000479625 FAM3DQ96BQ1 224 aa6.94□□□□□ -1.3
GPNMB-211ENST00000479625 CMTM3Q96MX0 182 aa6.94□□□□□ -1.3
GPNMB-211ENST00000479625 HSD17B10Q99714 261 aaKnown RBP6.94□□□□□ -1.3
GPNMB-211ENST00000479625 OR2W1Q9Y3N9 320 aa6.94□□□□□ -1.3
GPNMB-211ENST00000479625 VPS13BQ7Z7G8 4022 aa6.94□□□□□ -1.3
GPNMB-211ENST00000479625 KNCNA6PVL3 124 aa6.93□□□□□ -1.3
GPNMB-211ENST00000479625 K7EIM0 57 aa6.93□□□□□ -1.3
GPNMB-211ENST00000479625 RGS13O14921 159 aa6.93□□□□□ -1.3
GPNMB-211ENST00000479625 YIF1AO95070 293 aa6.93□□□□□ -1.3
GPNMB-211ENST00000479625 IFNA21P01568 189 aa6.93□□□□□ -1.3
GPNMB-211ENST00000479625 IFNA17P01571 189 aa6.93□□□□□ -1.3
GPNMB-211ENST00000479625 SERPINE2P07093 398 aa6.93□□□□□ -1.3
GPNMB-211ENST00000479625 CTSGP08311 255 aa6.93□□□□□ -1.3
GPNMB-211ENST00000479625 OR13C7P0DN81 318 aa6.93□□□□□ -1.3
GPNMB-211ENST00000479625 HIST1H1DP16402 221 aaKnown RBP6.93□□□□□ -1.3
GPNMB-211ENST00000479625 LILRB2Q8N423 598 aa6.93□□□□□ -1.3
GPNMB-211ENST00000479625 OR10R2Q8NGX6 335 aa6.93□□□□□ -1.3
GPNMB-211ENST00000479625 TMEM203Q969S6 136 aa6.93□□□□□ -1.3
GPNMB-211ENST00000479625 OR10C1Q96KK4 312 aa6.93□□□□□ -1.3
GPNMB-211ENST00000479625 QTRT1Q9BXR0 403 aaKnown RBP6.93□□□□□ -1.3
GPNMB-211ENST00000479625 COMMD5Q9GZQ3 224 aa6.93□□□□□ -1.3
GPNMB-211ENST00000479625 MS4A6AQ9H2W1 248 aa6.93□□□□□ -1.3
GPNMB-211ENST00000479625 SMPD3Q9NY59 655 aaPredicted RBP6.93□□□□□ -1.3
GPNMB-211ENST00000479625 TBC1D24Q9ULP9 559 aa6.93□□□□□ -1.3
GPNMB-211ENST00000479625 UPK2O00526 184 aa6.92□□□□□ -1.3
GPNMB-211ENST00000479625 ST8SIA3O43173 380 aa6.92□□□□□ -1.3
GPNMB-211ENST00000479625 TALDO1P37837 337 aa6.92□□□□□ -1.3
GPNMB-211ENST00000479625 TMEM91Q6ZNR0 172 aa6.92□□□□□ -1.3
GPNMB-211ENST00000479625 Q6ZS49 121 aa6.92□□□□□ -1.3
GPNMB-211ENST00000479625 SPAG16Q8N0X2 631 aa6.92□□□□□ -1.3
GPNMB-211ENST00000479625 CSNK1G2-AS1Q8NCQ2 148 aa6.92□□□□□ -1.3
GPNMB-211ENST00000479625 CYGBQ8WWM9 190 aa6.92□□□□□ -1.3
GPNMB-211ENST00000479625 TMEM14BQ9NUH8 114 aa6.92□□□□□ -1.3
GPNMB-211ENST00000479625 TMEM140Q9NV12 185 aa6.92□□□□□ -1.3
GPNMB-211ENST00000479625 PSORS1C1Q9UIG5 152 aa6.92□□□□□ -1.3
GPNMB-211ENST00000479625 F11RQ9Y624 299 aaKnown RBP6.92□□□□□ -1.3
GPNMB-211ENST00000479625 TRAV14DV4A0A0A6YYC5 116 aa6.91□□□□□ -1.3
GPNMB-211ENST00000479625 DNASE2O00115 360 aaPredicted RBP6.91□□□□□ -1.3
GPNMB-211ENST00000479625 SULT1C2O00338 296 aa6.91□□□□□ -1.3
GPNMB-211ENST00000479625 CYB5BO43169 146 aa6.91□□□□□ -1.3
GPNMB-211ENST00000479625 DFFBO76075 338 aa6.91□□□□□ -1.3
GPNMB-211ENST00000479625 IGHV3-48P01763 117 aa6.91□□□□□ -1.3
GPNMB-211ENST00000479625 SPP1P10451 314 aa6.91□□□□□ -1.3
GPNMB-211ENST00000479625 GADD45AP24522 165 aa6.91□□□□□ -1.3
GPNMB-211ENST00000479625 RASSF2P50749 326 aa6.91□□□□□ -1.3
GPNMB-211ENST00000479625 RPS25P62851 125 aaKnown RBP6.91□□□□□ -1.3
GPNMB-211ENST00000479625 RPL11P62913 178 aaKnown RBP6.91□□□□□ -1.3
GPNMB-211ENST00000479625 PAFAH1B2P68402 229 aa6.91□□□□□ -1.3
GPNMB-211ENST00000479625 RELQ04864 619 aaPredicted RBP6.91□□□□□ -1.3
GPNMB-211ENST00000479625 UBE2UQ5VVX9 321 aa6.91□□□□□ -1.3
GPNMB-211ENST00000479625 LIPKQ5VXJ0 399 aa6.91□□□□□ -1.3
GPNMB-211ENST00000479625 ZFP1Q6P2D0 407 aa6.91□□□□□ -1.3
GPNMB-211ENST00000479625 MORN3Q6PF18 240 aaPredicted RBP6.91□□□□□ -1.3
GPNMB-211ENST00000479625 DGCR14Q96DF8 476 aaKnown RBP6.91□□□□□ -1.3
GPNMB-211ENST00000479625 SRSF8Q9BRL6 282 aaKnown RBP6.91□□□□□ -1.3
GPNMB-211ENST00000479625 HINT2Q9BX68 163 aa6.91□□□□□ -1.3
GPNMB-211ENST00000479625 KRTAP4-9Q9BYQ8 210 aa6.91□□□□□ -1.3
GPNMB-211ENST00000479625 RABAC1Q9UI14 185 aa6.91□□□□□ -1.3
GPNMB-211ENST00000479625 RAB22AQ9UL26 194 aa6.91□□□□□ -1.3
GPNMB-211ENST00000479625 LSM2Q9Y333 95 aaKnown RBP6.91□□□□□ -1.3
GPNMB-211ENST00000479625 TEX50A0A1B0GTY4 177 aa6.9□□□□□ -1.3
GPNMB-211ENST00000479625 SLC22A5O76082 557 aa6.9□□□□□ -1.3
GPNMB-211ENST00000479625 EIF4EP06730 217 aaKnown RBP6.9□□□□□ -1.3
GPNMB-211ENST00000479625 GNAO1P09471 354 aa6.9□□□□□ -1.3
GPNMB-211ENST00000479625 ZNF688P0C7X2 276 aa6.9□□□□□ -1.3
GPNMB-211ENST00000479625 TRAPPC2P0DI81 140 aa6.9□□□□□ -1.3
GPNMB-211ENST00000479625 TRAPPC2BP0DI82 140 aa6.9□□□□□ -1.3
GPNMB-211ENST00000479625 CALRP27797 417 aaKnown RBP6.9□□□□□ -1.3
GPNMB-211ENST00000479625 TAS2R31P59538 309 aa6.9□□□□□ -1.3
GPNMB-211ENST00000479625 POU2AF1Q16633 256 aa6.9□□□□□ -1.3
GPNMB-211ENST00000479625 TMEM41BQ5BJD5 291 aa6.9□□□□□ -1.3
GPNMB-211ENST00000479625 ACTL10Q5JWF8 245 aa6.9□□□□□ -1.3
GPNMB-211ENST00000479625 ZNF773Q6PK81 442 aa6.9□□□□□ -1.3
GPNMB-211ENST00000479625 ZNF66Q6ZN08 573 aa6.9□□□□□ -1.3
GPNMB-211ENST00000479625 PQLC1Q8N2U9 271 aa6.9□□□□□ -1.3
GPNMB-211ENST00000479625 DMBX1Q8NFW5 382 aa6.9□□□□□ -1.3
GPNMB-211ENST00000479625 NUDCD2Q8WVJ2 157 aa6.9□□□□□ -1.3
GPNMB-211ENST00000479625 SECTM1Q8WVN6 248 aa6.9□□□□□ -1.3
GPNMB-211ENST00000479625 ATP6V0BQ99437 205 aa6.9□□□□□ -1.3
GPNMB-211ENST00000479625 MND1Q9BWT6 205 aa6.9□□□□□ -1.3
GPNMB-211ENST00000479625 VSIRQ9H7M9 311 aa6.9□□□□□ -1.3
GPNMB-211ENST00000479625 CCL28Q9NRJ3 127 aa6.9□□□□□ -1.3
GPNMB-211ENST00000479625 KRTAP9-7A8MTY7 169 aa6.89□□□□□ -1.31
GPNMB-211ENST00000479625 PTHLHP12272 177 aa6.89□□□□□ -1.31
GPNMB-211ENST00000479625 HTN3P15516 51 aa6.89□□□□□ -1.31
GPNMB-211ENST00000479625 DTYMKP23919 212 aa6.89□□□□□ -1.31
GPNMB-211ENST00000479625 EMP1P54849 157 aa6.89□□□□□ -1.31
GPNMB-211ENST00000479625 OR10A3P58181 314 aa6.89□□□□□ -1.31
GPNMB-211ENST00000479625 SSX1Q16384 188 aa6.89□□□□□ -1.31
GPNMB-211ENST00000479625 RNF212Q495C1 297 aa6.89□□□□□ -1.31
GPNMB-211ENST00000479625 THOC7Q6I9Y2 204 aaKnown RBP6.89□□□□□ -1.31
GPNMB-211ENST00000479625 SPATA12Q7Z6I5 190 aa6.89□□□□□ -1.31
GPNMB-211ENST00000479625 BPIFB6Q8NFQ5 453 aa6.89□□□□□ -1.31
GPNMB-211ENST00000479625 STXBP6Q8NFX7 210 aa6.89□□□□□ -1.31
GPNMB-211ENST00000479625 LSM10Q969L4 123 aaKnown RBP6.89□□□□□ -1.31
GPNMB-211ENST00000479625 SLC25A46Q96AG3 418 aa6.89□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms