RNA–Protein interactions for RNA: ENST00000477547.6

SEC13-215, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, humanhuman

TSL 2

Gene SEC13, Length 1,313 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC13-215ENST00000477547 DEFA5Q01523 94 aa11.96□□□□□ -0.49
SEC13-215ENST00000477547 SRSF4Q08170 494 aaKnown RBP11.96□□□□□ -0.49
SEC13-215ENST00000477547 HIST2H2BDQ6DRA6 164 aa11.96□□□□□ -0.49
SEC13-215ENST00000477547 CTRB2Q6GPI1 263 aa11.96□□□□□ -0.49
SEC13-215ENST00000477547 OR2C3Q8N628 320 aa11.96□□□□□ -0.49
SEC13-215ENST00000477547 OR4D5Q8NGN0 318 aa11.96□□□□□ -0.49
SEC13-215ENST00000477547 MGAT4CQ9UBM8 478 aa11.96□□□□□ -0.49
SEC13-215ENST00000477547 WRBO00258 174 aa11.95□□□□□ -0.5
SEC13-215ENST00000477547 PRH1P02810 166 aa11.95□□□□□ -0.5
SEC13-215ENST00000477547 TRGV3P03979 118 aa11.95□□□□□ -0.5
SEC13-215ENST00000477547 RPLP1P05386 114 aaKnown RBP11.95□□□□□ -0.5
SEC13-215ENST00000477547 CRYGCP07315 174 aa11.95□□□□□ -0.5
SEC13-215ENST00000477547 DEFA4P12838 97 aa11.95□□□□□ -0.5
SEC13-215ENST00000477547 NKX2-1P43699 371 aaPredicted RBP11.95□□□□□ -0.5
SEC13-215ENST00000477547 TCTEX1D4Q5JR98 221 aa11.95□□□□□ -0.5
SEC13-215ENST00000477547 C11orf87Q6NUJ2 197 aa11.95□□□□□ -0.5
SEC13-215ENST00000477547 TMEM65Q6PI78 240 aa11.95□□□□□ -0.5
SEC13-215ENST00000477547 DTD1Q8TEA8 209 aa11.95□□□□□ -0.5
SEC13-215ENST00000477547 MS4A10Q96PG2 267 aa11.95□□□□□ -0.5
SEC13-215ENST00000477547 MAGT1Q9H0U3 335 aa11.95□□□□□ -0.5
SEC13-215ENST00000477547 RBKSQ9H477 322 aa11.95□□□□□ -0.5
SEC13-215ENST00000477547 SLA2Q9H6Q3 261 aa11.95□□□□□ -0.5
SEC13-215ENST00000477547 GSKIPQ9P0R6 139 aa11.95□□□□□ -0.5
SEC13-215ENST00000477547 INS-IGF2F8WCM5 200 aa11.94□□□□□ -0.5
SEC13-215ENST00000477547 MED6O75586 246 aa11.94□□□□□ -0.5
SEC13-215ENST00000477547 SIX6O95475 246 aa11.94□□□□□ -0.5
SEC13-215ENST00000477547 IAPPP10997 89 aa11.94□□□□□ -0.5
SEC13-215ENST00000477547 ERHP84090 104 aaKnown RBP11.94□□□□□ -0.5
SEC13-215ENST00000477547 RNF152Q8N8N0 203 aa11.94□□□□□ -0.5
SEC13-215ENST00000477547 ZNF114Q8NC26 417 aa11.94□□□□□ -0.5
SEC13-215ENST00000477547 C2orf50Q96LR7 162 aa11.94□□□□□ -0.5
SEC13-215ENST00000477547 CITED1Q99966 193 aa11.94□□□□□ -0.5
SEC13-215ENST00000477547 CITED2Q99967 270 aaPredicted RBP11.94□□□□□ -0.5
SEC13-215ENST00000477547 ZNF747Q9BV97 191 aa11.94□□□□□ -0.5
SEC13-215ENST00000477547 MED28Q9H204 178 aa11.94□□□□□ -0.5
SEC13-215ENST00000477547 KLK15Q9H2R5 256 aa11.94□□□□□ -0.5
SEC13-215ENST00000477547 HEYLQ9NQ87 328 aaPredicted RBP11.94□□□□□ -0.5
SEC13-215ENST00000477547 F11RQ9Y624 299 aaKnown RBP11.94□□□□□ -0.5
SEC13-215ENST00000477547 TCRBV4S1A1TA0A5B7 111 aa11.93□□□□□ -0.5
SEC13-215ENST00000477547 CYB5BO43169 146 aa11.93□□□□□ -0.5
SEC13-215ENST00000477547 SNCAP37840 140 aa11.93□□□□□ -0.5
SEC13-215ENST00000477547 RHOGP84095 191 aa11.93□□□□□ -0.5
SEC13-215ENST00000477547 CD83Q01151 205 aa11.93□□□□□ -0.5
SEC13-215ENST00000477547 SLC24A4Q8NFF2 622 aa11.93□□□□□ -0.5
SEC13-215ENST00000477547 MYOZ3Q8TDC0 251 aa11.93□□□□□ -0.5
SEC13-215ENST00000477547 P2RX4Q99571 388 aa11.93□□□□□ -0.5
SEC13-215ENST00000477547 HIPK2Q9H2X6 1198 aa11.93□□□□□ -0.5
SEC13-215ENST00000477547 PRKDCP78527 4128 aaKnown RBP11.93□□□□□ -0.5
SEC13-215ENST00000477547 IGLV11-55A0A075B6I3 123 aa11.92□□□□□ -0.5
SEC13-215ENST00000477547 A0A1W2PRX2 142 aa11.92□□□□□ -0.5
SEC13-215ENST00000477547 SYNGR2O43760 224 aa11.92□□□□□ -0.5
SEC13-215ENST00000477547 SSSCA1O60232 199 aa11.92□□□□□ -0.5
SEC13-215ENST00000477547 OR2J3O76001 311 aa11.92□□□□□ -0.5
SEC13-215ENST00000477547 BRI3O95415 125 aa11.92□□□□□ -0.5
SEC13-215ENST00000477547 RAB9AP51151 201 aa11.92□□□□□ -0.5
SEC13-215ENST00000477547 S100A10P60903 97 aa11.92□□□□□ -0.5
SEC13-215ENST00000477547 RRAS2P62070 204 aaPredicted RBP11.92□□□□□ -0.5
SEC13-215ENST00000477547 POLR2GP62487 172 aaKnown RBP eCLIP11.92□□□□□ -0.5
SEC13-215ENST00000477547 RPL23AP62750 156 aaKnown RBP11.92□□□□□ -0.5
SEC13-215ENST00000477547 PRR31Q5SQ13 230 aa11.92□□□□□ -0.5
SEC13-215ENST00000477547 OR1P1Q8NH06 330 aa11.92□□□□□ -0.5
SEC13-215ENST00000477547 RCL1Q9Y2P8 373 aaKnown RBP11.92□□□□□ -0.5
SEC13-215ENST00000477547 DMRT1Q9Y5R6 373 aa11.92□□□□□ -0.5
SEC13-215ENST00000477547 TSSC4Q9Y5U2 329 aaPredicted RBP11.92□□□□□ -0.5
SEC13-215ENST00000477547 FAM223BA6NKX1 122 aa11.91□□□□□ -0.5
SEC13-215ENST00000477547 NUDT19A8MXV4 375 aa11.91□□□□□ -0.5
SEC13-215ENST00000477547 MBPP02686 304 aaPredicted RBP11.91□□□□□ -0.5
SEC13-215ENST00000477547 RNASE2P10153 161 aaKnown RBP11.91□□□□□ -0.5
SEC13-215ENST00000477547 HIST1H1BP16401 226 aaKnown RBP11.91□□□□□ -0.5
SEC13-215ENST00000477547 NPY1RP25929 384 aa11.91□□□□□ -0.5
SEC13-215ENST00000477547 MFAP2P55001 183 aa11.91□□□□□ -0.5
SEC13-215ENST00000477547 H2BFSP57053 126 aa11.91□□□□□ -0.5
SEC13-215ENST00000477547 ID3Q02535 119 aa11.91□□□□□ -0.5
SEC13-215ENST00000477547 FCN2Q15485 313 aa11.91□□□□□ -0.5
SEC13-215ENST00000477547 SHISA2Q6UWI4 295 aa11.91□□□□□ -0.5
SEC13-215ENST00000477547 FAM223AQ8IWN6 122 aa11.91□□□□□ -0.5
SEC13-215ENST00000477547 NECAP1Q8NC96 275 aa11.91□□□□□ -0.5
SEC13-215ENST00000477547 KLHL30-AS1Q8NEE0 82 aa11.91□□□□□ -0.5
SEC13-215ENST00000477547 OR1L6Q8NGR2 347 aa11.91□□□□□ -0.5
SEC13-215ENST00000477547 FANCD2OSQ96PS1 177 aa11.91□□□□□ -0.5
SEC13-215ENST00000477547 CIB3Q96Q77 187 aaPredicted RBP11.91□□□□□ -0.5
SEC13-215ENST00000477547 FBXL7Q9UJT9 491 aa11.91□□□□□ -0.5
SEC13-215ENST00000477547 LSM5Q9Y4Y9 91 aaKnown RBP11.91□□□□□ -0.5
SEC13-215ENST00000477547 CMYA5Q8N3K9 4069 aa11.91□□□□□ -0.5
SEC13-215ENST00000477547 TRBV9A0A0B4J1U6 114 aa11.9□□□□□ -0.5
SEC13-215ENST00000477547 IFNA10P01566 189 aa11.9□□□□□ -0.5
SEC13-215ENST00000477547 CXCL3P19876 107 aa11.9□□□□□ -0.5
SEC13-215ENST00000477547 HTR2BP41595 481 aa11.9□□□□□ -0.5
SEC13-215ENST00000477547 SUB1P53999 127 aaKnown RBP eCLIP11.9□□□□□ -0.55e-7■□□□□ 9.3
SEC13-215ENST00000477547 EXOSC2Q13868 293 aaKnown RBP11.9□□□□□ -0.5
SEC13-215ENST00000477547 BSXQ3C1V8 233 aa11.9□□□□□ -0.5
SEC13-215ENST00000477547 NSUN5P1Q3KNT7 163 aa11.9□□□□□ -0.5
SEC13-215ENST00000477547 SLC25A24Q6NUK1 477 aa11.9□□□□□ -0.5
SEC13-215ENST00000477547 NDUFA11Q86Y39 141 aa11.9□□□□□ -0.5
SEC13-215ENST00000477547 ZNF491Q8N8L2 437 aa11.9□□□□□ -0.5
SEC13-215ENST00000477547 OR11H7Q8NGC8 314 aa11.9□□□□□ -0.5
SEC13-215ENST00000477547 MISP3Q96FF7 219 aa11.9□□□□□ -0.5
SEC13-215ENST00000477547 NMES1Q9C002 83 aa11.9□□□□□ -0.5
SEC13-215ENST00000477547 ZFP57Q9NU63 452 aa11.9□□□□□ -0.5
SEC13-215ENST00000477547 A0A0G2JLM5 398 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms