RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 OR2Y1Q8NGV0 311 aa9.65□□□□□ -0.87
CPSF3-202ENST00000460593 OR2T6Q8NHC8 308 aa9.65□□□□□ -0.87
CPSF3-202ENST00000460593 C11orf52Q96A22 123 aa9.65□□□□□ -0.87
CPSF3-202ENST00000460593 ZNF331Q9NQX6 463 aaPredicted RBP9.65□□□□□ -0.87
CPSF3-202ENST00000460593 CFAP47Q6ZTR5 3102 aa9.64□□□□□ -0.87
CPSF3-202ENST00000460593 TRBV9A0A0B4J1U6 114 aa9.64□□□□□ -0.87
CPSF3-202ENST00000460593 CER1O95813 267 aa9.64□□□□□ -0.87
CPSF3-202ENST00000460593 UBE2G1P62253 170 aa9.64□□□□□ -0.87
CPSF3-202ENST00000460593 MORN5Q5VZ52 161 aa9.64□□□□□ -0.87
CPSF3-202ENST00000460593 C1orf229Q6ZS94 237 aaPredicted RBP9.64□□□□□ -0.87
CPSF3-202ENST00000460593 TNFRSF19Q9NS68 423 aa9.64□□□□□ -0.87
CPSF3-202ENST00000460593 SAP30O75446 220 aa9.64□□□□□ -0.87
CPSF3-202ENST00000460593 MT-ND6P03923 174 aa9.64□□□□□ -0.87
CPSF3-202ENST00000460593 NPY1RP25929 384 aa9.64□□□□□ -0.87
CPSF3-202ENST00000460593 ARG2P78540 354 aa9.64□□□□□ -0.87
CPSF3-202ENST00000460593 TMEM249Q2WGJ8 235 aa9.64□□□□□ -0.87
CPSF3-202ENST00000460593 MORN2Q502X0 79 aa9.64□□□□□ -0.87
CPSF3-202ENST00000460593 TRAT1Q6PIZ9 186 aa9.64□□□□□ -0.87
CPSF3-202ENST00000460593 C19orf35Q6ZS72 473 aa9.64□□□□□ -0.87
CPSF3-202ENST00000460593 BCL2L2Q92843 193 aaPredicted RBP9.64□□□□□ -0.87
CPSF3-202ENST00000460593 TMEM45BQ96B21 275 aa9.64□□□□□ -0.87
CPSF3-202ENST00000460593 NAA38Q9BRA0 125 aaKnown RBP9.64□□□□□ -0.87
CPSF3-202ENST00000460593 C2orf70A6NJV1 201 aa9.63□□□□□ -0.87
CPSF3-202ENST00000460593 H0YJW9 148 aa9.63□□□□□ -0.87
CPSF3-202ENST00000460593 HLA-DQA1P01909 254 aa9.63□□□□□ -0.87
CPSF3-202ENST00000460593 GPR12P47775 334 aa9.63□□□□□ -0.87
CPSF3-202ENST00000460593 OR1C1Q15619 314 aa9.63□□□□□ -0.87
CPSF3-202ENST00000460593 TEPPQ6URK8 271 aa9.63□□□□□ -0.87
CPSF3-202ENST00000460593 WFDC8Q8IUA0 241 aa9.63□□□□□ -0.87
CPSF3-202ENST00000460593 GCNT2Q8N0V5 402 aa9.63□□□□□ -0.87
CPSF3-202ENST00000460593 SMRP1Q8NCR6 262 aa9.63□□□□□ -0.87
CPSF3-202ENST00000460593 PLEKHA3Q9HB20 300 aa9.63□□□□□ -0.87
CPSF3-202ENST00000460593 NPVFQ9HCQ7 196 aa9.63□□□□□ -0.87
CPSF3-202ENST00000460593 OBP2BQ9NPH6 170 aa9.63□□□□□ -0.87
CPSF3-202ENST00000460593 TCF19Q9Y242 345 aa9.63□□□□□ -0.87
CPSF3-202ENST00000460593 LOXL2Q9Y4K0 774 aa9.63□□□□□ -0.87
CPSF3-202ENST00000460593 LSM4Q9Y4Z0 139 aaKnown RBP9.63□□□□□ -0.87
CPSF3-202ENST00000460593 ABCA1O95477 2261 aa9.63□□□□□ -0.87
CPSF3-202ENST00000460593 OR4C46A6NHA9 309 aa9.63□□□□□ -0.87
CPSF3-202ENST00000460593 MMP23AO75900 390 aa9.63□□□□□ -0.87
CPSF3-202ENST00000460593 DUTP33316 252 aaKnown RBP9.63□□□□□ -0.87
CPSF3-202ENST00000460593 ZNF138P52744 262 aa9.63□□□□□ -0.87
CPSF3-202ENST00000460593 ZNF146Q15072 292 aa9.63□□□□□ -0.87
CPSF3-202ENST00000460593 LYSMD4Q5XG99 296 aa9.63□□□□□ -0.87
CPSF3-202ENST00000460593 TMEM140Q9NV12 185 aa9.63□□□□□ -0.87
CPSF3-202ENST00000460593 TRAV30A0A087WSZ9 112 aa9.63□□□□□ -0.87
CPSF3-202ENST00000460593 A0A087X0K7 114 aa9.63□□□□□ -0.87
CPSF3-202ENST00000460593 OOEPA6NGQ2 149 aa9.63□□□□□ -0.87
CPSF3-202ENST00000460593 URB1-AS1Q96HZ7 61 aa9.63□□□□□ -0.87
CPSF3-202ENST00000460593 TXNDC17Q9BRA2 123 aa9.63□□□□□ -0.87
CPSF3-202ENST00000460593 TNRC6BQ9UPQ9 1833 aaKnown RBP9.63□□□□□ -0.87
CPSF3-202ENST00000460593 DYSFO75923 2080 aa9.62□□□□□ -0.87
CPSF3-202ENST00000460593 MPDU1O75352 247 aa9.62□□□□□ -0.87
CPSF3-202ENST00000460593 IGHV3-48P01763 117 aa9.62□□□□□ -0.87
CPSF3-202ENST00000460593 MAGEA5P43359 124 aa9.62□□□□□ -0.87
CPSF3-202ENST00000460593 RPL19P84098 196 aaKnown RBP9.62□□□□□ -0.87
CPSF3-202ENST00000460593 ZBTB34Q8NCN2 500 aa9.62□□□□□ -0.87
CPSF3-202ENST00000460593 OR8B3Q8NGG8 313 aa9.62□□□□□ -0.87
CPSF3-202ENST00000460593 NABP2Q9BQ15 211 aa9.62□□□□□ -0.87
CPSF3-202ENST00000460593 GNG12Q9UBI6 72 aa9.62□□□□□ -0.87
CPSF3-202ENST00000460593 IL19Q9UHD0 177 aa9.62□□□□□ -0.87
CPSF3-202ENST00000460593 SPENQ96T58 3664 aaKnown RBP9.62□□□□□ -0.87
CPSF3-202ENST00000460593 ZNF318Q5VUA4 2279 aa9.62□□□□□ -0.87
CPSF3-202ENST00000460593 IGKV1OR2-108A0A075B7D4 117 aa9.62□□□□□ -0.87
CPSF3-202ENST00000460593 SMIM27A0A1W2PRY6 76 aa9.62□□□□□ -0.87
CPSF3-202ENST00000460593 LINC00869P0C866 280 aa9.62□□□□□ -0.87
CPSF3-202ENST00000460593 MPV17P39210 176 aa9.62□□□□□ -0.87
CPSF3-202ENST00000460593 OR2D3Q8NGH3 330 aa9.62□□□□□ -0.87
CPSF3-202ENST00000460593 SLC25A40Q8TBP6 338 aa9.62□□□□□ -0.87
CPSF3-202ENST00000460593 SARAFQ96BY9 339 aa9.62□□□□□ -0.87
CPSF3-202ENST00000460593 OSTCQ9NRP0 149 aa9.62□□□□□ -0.87
CPSF3-202ENST00000460593 POLDIP2Q9Y2S7 368 aa9.62□□□□□ -0.87
CPSF3-202ENST00000460593 CADP27708 2225 aa9.62□□□□□ -0.87
CPSF3-202ENST00000460593 TRAV8-6A0A0B4J262 113 aa9.61□□□□□ -0.87
CPSF3-202ENST00000460593 VWC2LB2RUY7 222 aa9.61□□□□□ -0.87
CPSF3-202ENST00000460593 ZNF134P52741 427 aa9.61□□□□□ -0.87
CPSF3-202ENST00000460593 SPEM1Q8N4L4 309 aa9.61□□□□□ -0.87
CPSF3-202ENST00000460593 NUP35Q8NFH5 326 aa9.61□□□□□ -0.87
CPSF3-202ENST00000460593 GSX1Q9H4S2 264 aaPredicted RBP9.61□□□□□ -0.87
CPSF3-202ENST00000460593 CEP192Q8TEP8 1941 aa9.61□□□□□ -0.87
CPSF3-202ENST00000460593 IZUMO1RA6ND01 250 aa9.61□□□□□ -0.87
CPSF3-202ENST00000460593 MT-CO2P00403 227 aa9.61□□□□□ -0.87
CPSF3-202ENST00000460593 ARR3P36575 388 aa9.61□□□□□ -0.87
CPSF3-202ENST00000460593 FOLR3P41439 243 aa9.61□□□□□ -0.87
CPSF3-202ENST00000460593 TBR1Q16650 682 aa9.61□□□□□ -0.87
CPSF3-202ENST00000460593 BVES-AS1Q5T3Y7 98 aa9.61□□□□□ -0.87
CPSF3-202ENST00000460593 NUDT10Q8NFP7 164 aa9.61□□□□□ -0.87
CPSF3-202ENST00000460593 ZPBPQ9BS86 351 aa9.61□□□□□ -0.87
CPSF3-202ENST00000460593 CHODLQ9H9P2 273 aa9.61□□□□□ -0.87
CPSF3-202ENST00000460593 AREGP15514 252 aa9.61□□□□□ -0.87
CPSF3-202ENST00000460593 PSG9Q00887 426 aa9.61□□□□□ -0.87
CPSF3-202ENST00000460593 WDR54Q9H977 334 aa9.61□□□□□ -0.87
CPSF3-202ENST00000460593 RPH3ALQ9UNE2 315 aa9.61□□□□□ -0.87
CPSF3-202ENST00000460593 ISLRO14498 428 aa9.6□□□□□ -0.87
CPSF3-202ENST00000460593 PLAUP00749 431 aa9.6□□□□□ -0.87
CPSF3-202ENST00000460593 PPBPP02775 128 aa9.6□□□□□ -0.87
CPSF3-202ENST00000460593 PYYP10082 97 aa9.6□□□□□ -0.87
CPSF3-202ENST00000460593 ZNF137PP52743 207 aa9.6□□□□□ -0.87
CPSF3-202ENST00000460593 SLC35E4Q6ICL7 350 aa9.6□□□□□ -0.87
CPSF3-202ENST00000460593 TCF24Q7RTU0 167 aa9.6□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms